Check and Transform R Notebooks

Transform R notebooks to Rmd; Add checks for R notebooks; Small mod to checks in Python notebooks #23

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Run time

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Job	Run time
test-R-notebooks (PM1)	10m 41s
test-R-notebooks (PM2)	10m 40s
test-R-notebooks (PM3)	10m 41s
test-R-notebooks (PM4)	10m 41s
test-R-notebooks (PM5)	10m 41s
test-R-notebooks (CM1)	10m 43s
test-R-notebooks (CM2)	8m 42s
test-R-notebooks (CM3)	10m 43s
test-R-notebooks (AC1)	10m 42s
test-R-notebooks (AC2)	10m 41s
test-R-notebooks (T)	10m 41s
	1h 55m 36s