Check and Transform R Notebooks

Transform R notebooks to Rmd; Add checks for R notebooks; Small mod to checks in Python notebooks #19

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Run time

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Job	Run time
test-R-notebooks (PM1)	13m 6s
test-R-notebooks (PM2)	14m 31s
test-R-notebooks (PM3)	14m 30s
test-R-notebooks (PM4)	14m 31s
test-R-notebooks (PM5)	13m 4s
test-R-notebooks (CM1)	11m 26s
test-R-notebooks (CM2)	7m 55s
test-R-notebooks (CM3)	14m 30s
test-R-notebooks (AC1)	10m 43s
test-R-notebooks (AC2)	14m 32s
test-R-notebooks (T)	14m 29s
	2h 23m 17s