Check and Transform R Notebooks

Transform R notebooks to Rmd; Add checks for R notebooks; Small mod to checks in Python notebooks #18

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Run time

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Job	Run time
test-R-notebooks (PM1)	12m 41s
test-R-notebooks (PM2)	15m 24s
test-R-notebooks (PM3)	15m 24s
test-R-notebooks (PM4)	15m 24s
test-R-notebooks (PM5)	13m 31s
test-R-notebooks (CM1)	11m 14s
test-R-notebooks (CM2)	7m 25s
test-R-notebooks (CM3)	15m 25s
test-R-notebooks (AC1)	11m 20s
test-R-notebooks (AC2)	15m 23s
test-R-notebooks (T)	15m 24s
	2h 28m 35s