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@COG-UK

COG-UK

COG-UK Consortium has been created to deliver large-scale & rapid whole-genome virus sequencing to NHS centres and the UK government

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  1. grapevine grapevine Public

    Process consensus file for COG-UK data

    Python 14 2

  2. datapipe datapipe Public

    Nextflow implementation of grapevine

    Nextflow 8 3

  3. civet civet Public archive

    Forked from artic-network/civet

    Python 7 2

  4. dipi-group dipi-group Public

    Data integrity and pipeline integration working group

    4 1

  5. UK-lineage-dynamics-analysis UK-lineage-dynamics-analysis Public

    Large-scale virus genome sequencing reveals the genetic structure and importation dynamics of a national COVID-19 epidemic.

    R 4 1

  6. docs docs Public

    HTML 2 6

Repositories

Showing 10 of 18 repositories
  • dipi-group Public

    Data integrity and pipeline integration working group

    4 1 1 0 Updated Mar 6, 2025
  • datapipe Public

    Nextflow implementation of grapevine

    Nextflow 8 GPL-3.0 3 6 1 Updated Jan 7, 2025
  • docs Public
    HTML 2 6 0 0 Updated Dec 4, 2023
  • phylo-reports Public
    Jupyter Notebook 1 1 0 2 Updated Jul 6, 2023
  • Delta-analysis Public
    Jupyter Notebook 1 CC-BY-4.0 1 0 0 Updated Dec 19, 2021
  • travel-quarantine Public
    Python 0 0 0 0 Updated Dec 2, 2021
  • civet Public archive Forked from artic-network/civet
    Python 7 GPL-3.0 14 0 0 Updated Nov 30, 2021
  • camb-uni-phylo Public
    0 1 0 0 Updated Nov 10, 2021
  • grapevine Public

    Process consensus file for COG-UK data

    Python 14 GPL-3.0 2 11 0 Updated Sep 7, 2021
  • geography_cleaning Public
    Python 2 1 1 1 Updated Sep 3, 2021
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