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ICDC 3.59.7
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@kuffelgr kuffelgr released this 14 Aug 19:17
· 894 commits to main since this release
v3.59.7.79
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Release Notes - Integrated Canine Data Commons (ICDC) - Version ICDC 3.59.7 🐶 🧬

Build Details

FE Version: 3.59.7.79
BE Version: 14.8.0.77
FS Version: 1.4.0.59

New Supported Features

  • JBrowse opens in a new session window independent of application
  • Load a track in JBrowse that maps gene features from the human hg38 genome onto the canine canFam3 genome
  • Text search for JBrowse
  • View real-time supplementary data for ICDC studies using the IDC and TCIA APIs within the Studies page
  • View real-time supplementary data for ICDC studies using the IDC and TCIA APIs within the Study Details page
  • View real-time supplementary data for ICDC studies using the IDC and TCIA APIs on the Program Details page
  • View the availability of clinical observation data within the Studies Details page on a study by study basis
  • View the availability of detailed clinical observations via a designated tab within the Study Details page
  • Download detailed clinical observations on a node-by-node basis

New Content

  • Privacy Policy for landing page footer
  • ICDC News page updates
  • README file on the "My Files" Cart page

New services

  • None

New integrations

  • None

Data Model

  • Added new "Clinical Data Export" tag to appropriate Clinical and Clinical Trial nodes
  • Added "TRIzol" as an acceptable value for the sample: sample_preservation property
  • Removed unused "Color" tags from nodes
  • Added the appropriate values for: stage_of_disease, sample_site, and specific_sample_pathology
  • Commented out several working values for summarized_sample_type that have been superseded by the use of the terms "Tumoroid" and "Tumoroid (urine-derived)

Bug Fixes

  • Download of the File Transfer Manifest is enabled regardless of the "Template" tag
  • The content of one of the Data Loading File examples does not match the name of the file
  • Supporting Data tab on Study Details page shows Glioma data only irrespective of study
  • The Data Availability Landscape incorrectly indicates that the GLIOMA01 study has study files associated with it
  • The sample profile within the Studies Detail view sometimes displays incorrect data
  • An incorrect number of sample-level files are being added to the My Files cart via each of the cart action buttons within the Samples tab
  • Values for Supporting Data Tab not displayed correctly
  • JBrowse does not open as a new session window and still has navigation
  • JBrowse button on Explore Page not consistent with approved design and function
  • JBrowse button on Cart Page not consistent with approved design and function
  • File manifest Download icon is blurred
  • Data Model Navigator text is overlapping Filter & Search text box
  • "Add All Filtered Files" button does not add all files within Case Files tab
  • Clicking the PDF icon on READMe file in "My Files" Cart Page downloads as csv
  • Alignment issues on the "My Files" Cart Page READMe PDF
  • The footer of README PDF file doesn't display correct URL
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