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Fix observable definition #261

Merged
merged 2 commits into from
Feb 2, 2025
Merged

Fix observable definition #261

merged 2 commits into from
Feb 2, 2025

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FFroehlich
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I don' think this is valid PEtab. The spec does not explicitly state that ${observableId} in noiseParameter${indexOfNoiseParameter}_${observableId} has to match the corresponding observableId. However, as the noise parameters have to be specified in the measurements table and you can only specify the noise parameters of the corresponding variable in the measurements table, I don't see any way how this would be valid.

Also, how did nobody ever spot this 😅.

@dweindl
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dweindl commented Jan 31, 2025

I don't see any way how this would be valid.

I'd say it is, because the observable isn't used anywhere. If there was a measurement, the linter would complain.

I don't know if the extra observables or the missing measurements are the real issue here.

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@dilpath dilpath left a comment

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Thanks!

@dilpath dilpath merged commit 15b4f78 into master Feb 2, 2025
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@dilpath dilpath deleted the fix-Zhao_QuantBiol2020 branch February 2, 2025 22:28
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3 participants