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Steady state sensitivity modes#1727

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plakrisenko merged 24 commits intodevelopAMICI-dev/AMICI:developfrom stst_problem_settingsAMICI-dev/AMICI:stst_problem_settingsCopy head branch name to clipboardApr 5, 2022

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Commits on Mar 15, 2022

• Steady State Sensitivity modes

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• Merge branch 'develop' into stst_problem_settings

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Commits on Mar 21, 2022

• integrationOnly and integrateIfNewtonFails in forward sensitivity case

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• Merge branch 'develop' into stst_problem_settings

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• turn off newton method in case integrationOnly and forward sensitivity

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• python tests

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• fix

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• Apply suggestions from code review

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• turn off newtin in findSteadyState

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• Merge branch 'stst_problem_settings' of github.com:AMICI-dev/AMICI into stst_problem_settings

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Commits on Mar 23, 2022

• fix test_compare_conservation_laws_sbml

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Commits on Mar 25, 2022

• Merge branch 'develop' into stst_problem_settings

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Commits on Mar 29, 2022

• Merge branch 'develop' into stst_problem_settings

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• fix

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• fix

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• take preequilibration into account

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Commits on Mar 30, 2022

• add extra parentheses

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Commits on Apr 4, 2022

• Merge branch 'develop' into stst_problem_settings

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• fix test_compare_conservation_laws_sbml

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• fix test_compare_conservation_laws_sbml

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• Merge branch 'develop' into stst_problem_settings

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• Merge branch 'develop' into stst_problem_settings

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• quick notebook fix

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• Merge branch 'stst_problem_settings' of github.com:AMICI-dev/AMICI into stst_problem_settings

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