Fix HDF5 OSX intermediate group creation errors

AMICI-dev · Mar 25, 2022 · ff3c1f0 · ff3c1f0
1 parent fee0d5a
commit ff3c1f0
Showing 1 changed file with 3 additions and 17 deletions.
diff --git a/src/hdf5.cpp b/src/hdf5.cpp
@@ -84,23 +84,9 @@ void checkEventDimensionsCompatible(hsize_t m, hsize_t n, Model const& model) {
 void createGroup(H5::H5File const& file,
                  std::string const& groupPath,
                  bool recursively) {
-
-    auto groupCreationPropertyList = H5P_DEFAULT;
-
-    if (recursively) {
-        groupCreationPropertyList = H5Pcreate(H5P_LINK_CREATE);
-        H5Pset_create_intermediate_group(groupCreationPropertyList, 1);
-    }
-
-    hid_t group = H5Gcreate(file.getId(), groupPath.c_str(),
-                            groupCreationPropertyList,
-                            H5P_DEFAULT, H5P_DEFAULT);
-    H5Pclose(groupCreationPropertyList);
-
-    if (group < 0)
-        throw(AmiException("Failed to create group in hdf5CreateGroup: %s",
-                           groupPath.c_str()));
-    H5Gclose(group);
+    H5::LinkCreatPropList lcpl;
+    lcpl.setCreateIntermediateGroup(recursively);
+    file.createGroup(groupPath.c_str(), lcpl);
 }
 
 std::unique_ptr<ExpData> readSimulationExpData(std::string const& hdf5Filename,