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Copy file name to clipboardexpand all lines: USER-GUIDE.md
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## 5. Upload to Fragalysis
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An automatic tool for Fragalysis upload has not yet been written.
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To generate the gzipped tar file needed to manually upload the data move into your version dir and run this command
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(updating it for the specific upload version and target name):
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Change `upload_1` to whatever your current upload is.
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### Uploading using the API endpoint
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**Staging vs production: there are two live versions of Fragalysis. "Staging" is used for testing and is in constant development, therefore it may be buggier and/or have new features with respect to "production" which is the stable and public deployment. You should test if your upload works in staging, and verify that the data has been uploaded correctly before uploading to production. Data in staging is "at risk" as we may have to wipe the data occassionally for development reasons.**
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### First to log in to Fragalysis and authenticate and log in with your FedID:
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Fill in your email and attach the `.tgz` archive. After clicking 'POST' you will see a URL which you can append to https://fragalysis.xchem.diamond.ac.uk/ (or https://fragalysis.diamond.ac.uk/ for production) to track the progress of the upload.
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### Uploading with the XCA uploader tool
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To use the XChemAlign uploader tool, first log in to Fragalysis and obtain the authentication token. Token can be obtained from:
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