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DavidHuber-NOAADavidHuber-NOAA
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Ported the gdas_init scripts to S4 (#543).
1 parent f378c73 commit c707758

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2 files changed

+141
-4
lines changed

2 files changed

+141
-4
lines changed

‎fix/link_fixdirs.sh

+6-4
Original file line numberDiff line numberDiff line change
@@ -9,20 +9,20 @@ machine=${2}
99
if [ $# -lt 2 ]; then
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set +x
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echo '***ERROR*** must specify two arguements: (1) RUN_ENVIR, (2) machine'
12-
echo ' Syntax: link_fv3gfs.sh ( nco | emc ) ( cray | dell | hera | jet | orion )'
12+
echo ' Syntax: link_fv3gfs.sh ( nco | emc ) ( cray | dell | hera | jet | orion | s4 )'
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exit 1
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fi
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if [ $RUN_ENVIR != emc -a $RUN_ENVIR != nco ]; then
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set +x
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echo '***ERROR*** unsupported run environment'
19-
echo 'Syntax: link_fv3gfs.sh ( nco | emc ) ( cray | dell | hera | jet | orion )'
19+
echo 'Syntax: link_fv3gfs.sh ( nco | emc ) ( cray | dell | hera | jet | orion | s4 )'
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exit 1
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fi
22-
if [ $machine != cray -a $machine != hera -a $machine != dell -a $machine != jet -a $machine != orion ]; then
22+
if [ $machine != cray -a $machine != hera -a $machine != dell -a $machine != jet -a $machine != orion -a $machine != s4 ]; then
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set +x
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echo '***ERROR*** unsupported machine'
25-
echo 'Syntax: link_fv3gfs.sh ( nco | emc ) ( cray | dell | hera | jet | orion )'
25+
echo 'Syntax: link_fv3gfs.sh ( nco | emc ) ( cray | dell | hera | jet | orion | s4 )'
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exit 1
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fi
2828

@@ -45,6 +45,8 @@ elif [ $machine = "jet" ]; then
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FIX_DIR="/lfs4/HFIP/hfv3gfs/glopara/git/fv3gfs/fix"
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elif [ $machine = "orion" ]; then
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FIX_DIR="/work/noaa/global/glopara/fix"
48+
elif [ $machine = "s4" ]; then
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FIX_DIR="/data/prod/glopara/fix"
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fi
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for dir in fix_am fix_fv3 fix_orog fix_fv3_gmted2010 fix_sfc_climo; do

‎util/gdas_init/driver.s4.sh

+135
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,135 @@
1+
#!/bin/bash
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#---------------------------------------------------------------------
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# Driver script for running on S4.
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#
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# Edit the 'config' file before running.
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#---------------------------------------------------------------------
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set -x
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compiler=${compiler:-"intel"}
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source ../../sorc/machine-setup.sh > /dev/null 2>&1
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module use ../../modulefiles
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module load build.$target.$compiler
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module list
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# Needed for NDATE utility
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module load license_intel/S4
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module use /data/prod/hpc-stack/modulefiles/stack
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module load hpc/1.1.0
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module load hpc-intel/18.0.4
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module load hpc-impi/18.0.4
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module load prod_util/1.2.2
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PROJECT_CODE=star
26+
QUEUE=s4
27+
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source config
29+
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if [ $EXTRACT_DATA == yes ]; then
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32+
echo "HPSS is not accessible from S4! If you wish to run just the chgres portion, set EXTRACT_DATA=NO in the config file and try again."
33+
exit
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else # do not extract data.
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DEPEND=' '
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fi # extract data?
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if [ $RUN_CHGRES == yes ]; then
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export APRUN=srun
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NODES=3
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WALLT="0:15:00"
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export OMP_NUM_THREADS=1
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if [ $CRES_HIRES == 'C768' ] ; then
48+
NODES=5
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elif [ $CRES_HIRES == 'C1152' ] ; then
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NODES=8
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WALLT="0:20:00"
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fi
53+
case $gfs_ver in
54+
v12 | v13)
55+
export OMP_NUM_THREADS=4
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export OMP_STACKSIZE=1024M
57+
sbatch --parsable --ntasks-per-node=6 --nodes=${NODES} --cpus-per-task=$OMP_NUM_THREADS \
58+
-t $WALLT -A $PROJECT_CODE -q $QUEUE -J chgres_${CDUMP} \
59+
-o log.${CDUMP} -e log.${CDUMP} ${DEPEND} run_pre-v14.chgres.sh ${CDUMP}
60+
;;
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v14)
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sbatch --parsable --ntasks-per-node=6 --nodes=${NODES} -t $WALLT -A $PROJECT_CODE -q $QUEUE -J chgres_${CDUMP} \
63+
-o log.${CDUMP} -e log.${CDUMP} ${DEPEND} run_v14.chgres.sh ${CDUMP}
64+
;;
65+
v15)
66+
if [ "$CDUMP" = "gdas" ]; then
67+
sbatch --parsable --ntasks-per-node=6 --nodes=${NODES} -t $WALLT -A $PROJECT_CODE -q $QUEUE -J chgres_${CDUMP} \
68+
-o log.${CDUMP} -e log.${CDUMP} ${DEPEND} run_v15.chgres.sh ${CDUMP}
69+
else
70+
sbatch --parsable --ntasks-per-node=6 --nodes=${NODES} -t $WALLT -A $PROJECT_CODE -q $QUEUE -J chgres_${CDUMP} \
71+
-o log.${CDUMP} -e log.${CDUMP} ${DEPEND} run_v15.chgres.gfs.sh
72+
fi
73+
;;
74+
v16retro)
75+
if [ "$CDUMP" = "gdas" ] ; then
76+
sbatch --parsable --ntasks-per-node=6 --nodes=${NODES} -t $WALLT -A $PROJECT_CODE -q $QUEUE -J chgres_${CDUMP} \
77+
-o log.${CDUMP} -e log.${CDUMP} ${DEPEND} run_v16retro.chgres.sh hires
78+
else
79+
sbatch --parsable --ntasks-per-node=6 --nodes=${NODES} -t $WALLT -A $PROJECT_CODE -q $QUEUE -J chgres_${CDUMP} \
80+
-o log.${CDUMP} -e log.${CDUMP} ${DEPEND} run_v16.chgres.sh ${CDUMP}
81+
fi
82+
;;
83+
v16)
84+
sbatch --parsable --ntasks-per-node=6 --nodes=${NODES} -t $WALLT -A $PROJECT_CODE -q $QUEUE -J chgres_${CDUMP} \
85+
-o log.${CDUMP} -e log.${CDUMP} ${DEPEND} run_v16.chgres.sh ${CDUMP}
86+
;;
87+
esac
88+
89+
if [ "$CDUMP" = "gdas" ]; then
90+
91+
WALLT="0:15:00"
92+
93+
if [ "$gfs_ver" = "v16retro" ]; then
94+
95+
sbatch --parsable --ntasks-per-node=12 --nodes=1 -t $WALLT -A $PROJECT_CODE -q $QUEUE -J chgres_enkf \
96+
-o log.enkf -e log.enkf ${DEPEND} run_v16retro.chgres.sh enkf
97+
98+
else
99+
100+
MEMBER=1
101+
while [ $MEMBER -le 80 ]; do
102+
if [ $MEMBER -lt 10 ]; then
103+
MEMBER_CH="00${MEMBER}"
104+
else
105+
MEMBER_CH="0${MEMBER}"
106+
fi
107+
case $gfs_ver in
108+
v12 | v13)
109+
export OMP_NUM_THREADS=2
110+
export OMP_STACKSIZE=1024M
111+
sbatch --parsable --ntasks-per-node=12 --nodes=1 --cpus-per-task=$OMP_NUM_THREADS \
112+
-t $WALLT -A $PROJECT_CODE -q $QUEUE -J chgres_${MEMBER_CH} \
113+
-o log.${MEMBER_CH} -e log.${MEMBER_CH} ${DEPEND} run_pre-v14.chgres.sh ${MEMBER_CH}
114+
;;
115+
v14)
116+
sbatch --parsable --ntasks-per-node=12 --nodes=1 -t $WALLT -A $PROJECT_CODE -q $QUEUE -J chgres_${MEMBER_CH} \
117+
-o log.${MEMBER_CH} -e log.${MEMBER_CH} ${DEPEND} run_v14.chgres.sh ${MEMBER_CH}
118+
;;
119+
v15)
120+
sbatch --parsable --ntasks-per-node=12 --nodes=1 -t $WALLT -A $PROJECT_CODE -q $QUEUE -J chgres_${MEMBER_CH} \
121+
-o log.${MEMBER_CH} -e log.${MEMBER_CH} ${DEPEND} run_v15.chgres.sh ${MEMBER_CH}
122+
;;
123+
v16)
124+
sbatch --parsable --ntasks-per-node=12 --nodes=1 -t $WALLT -A $PROJECT_CODE -q $QUEUE -J chgres_${MEMBER_CH} \
125+
-o log.${MEMBER_CH} -e log.${MEMBER_CH} ${DEPEND} run_v16.chgres.sh ${MEMBER_CH}
126+
;;
127+
esac
128+
MEMBER=$(( $MEMBER + 1 ))
129+
done
130+
131+
fi # v16 retro?
132+
133+
fi # which CDUMP?
134+
135+
fi # run chgres?

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