From 6a1e3f6a25aecc3db9cb2f75ef51e6c598cd960d Mon Sep 17 00:00:00 2001 From: Mingfei Shao Date: Fri, 25 Sep 2020 11:08:53 -0500 Subject: [PATCH] remove arranger --- .eslintrc.js | 6 - Dockerfile | 1 - README.md | 24 - data/config/anvil.json | 6 - data/config/bhc.json | 6 - data/config/default.json | 6 - data/config/gtex.json | 16 +- data/config/kfDcfInterop.json | 6 - data/config/ncrdc-demo.json | 8 +- data/config/va.json | 13 - package-lock.json | 4288 ++++------------- package.json | 5 +- runWebpack.sh | 3 - src/Arranger/AggregationTabs.jsx | 126 - src/Arranger/AggregationTabs.test.jsx | 49 - src/Arranger/ArrangerWrapper.jsx | 100 - src/Arranger/ArrangerWrapper.test.jsx | 40 - src/Arranger/utils.js | 12 - src/DataExplorer/DataExplorer.less | 469 -- src/DataExplorer/DataExplorer.test.jsx | 10 - src/DataExplorer/DataExplorerFilters.jsx | 34 - src/DataExplorer/DataExplorerFilters.test.jsx | 67 - .../DataExplorerVisualizations.jsx | 358 -- .../DataExplorerVisualizations.test.jsx | 41 - src/DataExplorer/actionHelper.js | 223 - src/DataExplorer/arrangerQueryHelper.js | 350 -- src/DataExplorer/arrangerQueryHelper.test.js | 83 - src/DataExplorer/custom/bdbag.js | 116 - src/DataExplorer/index.jsx | 40 - src/Explorer/ExplorerComponent.jsx | 172 - src/Explorer/ExplorerComponent.less | 5 - src/Explorer/ExplorerPage.jsx | 35 - src/Explorer/ExplorerSideBar.jsx | 77 - src/Explorer/ExplorerSideBar.less | 12 - src/Explorer/ExplorerTabPanel.jsx | 156 - src/Explorer/ExplorerTabPanel.less | 44 - src/Explorer/ExplorerTable.jsx | 206 - src/Explorer/ExplorerTable.less | 137 - src/Explorer/ReduxExplorer.js | 121 - src/Explorer/ReduxExplorer.test.jsx | 75 - src/Explorer/__test__/data.json | 439 -- src/Explorer/__test__/expected.json | 441 -- src/Explorer/reducers.js | 85 - .../ExplorerButtonGroup/index.jsx | 2 +- .../utils.js | 24 - .../utils.test.js | 15 +- src/HIVCohortFilter/ECCase.jsx | 169 +- src/HIVCohortFilter/HIVCohortFilterCase.jsx | 57 +- src/HIVCohortFilter/LTNPCase.jsx | 169 +- src/actions.js | 4 +- src/components/ArrangerWrapper.jsx | 77 - src/components/ArrangerWrapper.test.jsx | 40 - src/components/charts/helper.js | 130 - src/components/charts/helper.test.js | 165 - .../DataExplorerTable/DataExplorerTable.less | 194 - .../DataExplorerTable.test.jsx | 15 - .../tables/DataExplorerTable/index.jsx | 54 - src/covid19Index.jsx | 8 +- src/index.jsx | 8 +- src/localconf.js | 10 - src/reducers.js | 3 +- src/stories/explorer.jsx | 11 +- src/stories/tables.jsx | 15 - webpack.config.js | 2 - 64 files changed, 1034 insertions(+), 8649 deletions(-) delete mode 100644 src/Arranger/AggregationTabs.jsx delete mode 100644 src/Arranger/AggregationTabs.test.jsx delete mode 100644 src/Arranger/ArrangerWrapper.jsx delete mode 100644 src/Arranger/ArrangerWrapper.test.jsx delete mode 100644 src/Arranger/utils.js delete mode 100644 src/DataExplorer/DataExplorer.less delete mode 100644 src/DataExplorer/DataExplorer.test.jsx delete mode 100644 src/DataExplorer/DataExplorerFilters.jsx delete mode 100644 src/DataExplorer/DataExplorerFilters.test.jsx delete mode 100644 src/DataExplorer/DataExplorerVisualizations.jsx delete mode 100644 src/DataExplorer/DataExplorerVisualizations.test.jsx delete mode 100644 src/DataExplorer/actionHelper.js delete mode 100644 src/DataExplorer/arrangerQueryHelper.js delete mode 100644 src/DataExplorer/arrangerQueryHelper.test.js delete mode 100644 src/DataExplorer/custom/bdbag.js delete mode 100644 src/DataExplorer/index.jsx delete mode 100644 src/Explorer/ExplorerComponent.jsx delete mode 100644 src/Explorer/ExplorerComponent.less delete mode 100644 src/Explorer/ExplorerPage.jsx delete mode 100644 src/Explorer/ExplorerSideBar.jsx delete mode 100644 src/Explorer/ExplorerSideBar.less delete mode 100644 src/Explorer/ExplorerTabPanel.jsx delete mode 100644 src/Explorer/ExplorerTabPanel.less delete mode 100644 src/Explorer/ExplorerTable.jsx delete mode 100644 src/Explorer/ExplorerTable.less delete mode 100644 src/Explorer/ReduxExplorer.js delete mode 100644 src/Explorer/ReduxExplorer.test.jsx delete mode 100644 src/Explorer/__test__/data.json delete mode 100644 src/Explorer/__test__/expected.json delete mode 100644 src/Explorer/reducers.js rename src/{DataExplorer => GuppyDataExplorer}/utils.js (76%) rename src/{DataExplorer => GuppyDataExplorer}/utils.test.js (74%) delete mode 100644 src/components/ArrangerWrapper.jsx delete mode 100644 src/components/ArrangerWrapper.test.jsx delete mode 100644 src/components/tables/DataExplorerTable/DataExplorerTable.less delete mode 100644 src/components/tables/DataExplorerTable/DataExplorerTable.test.jsx delete mode 100644 src/components/tables/DataExplorerTable/index.jsx delete mode 100644 src/stories/tables.jsx diff --git a/.eslintrc.js b/.eslintrc.js index 9dbf05e92d..60d284bde4 100644 --- a/.eslintrc.js +++ b/.eslintrc.js @@ -102,12 +102,6 @@ module.exports = { "no-loop-func": "off" // for D3 config } }, - { - "files": [ "src/Explorer/ExplorerTable.jsx" ], - "rules": { - "jsx-a11y/anchor-is-valid": "off" // for relative links - } - }, { "files": [ "src/QueryNode/QueryForm.jsx" ], "rules": { diff --git a/Dockerfile b/Dockerfile index 62d3072b14..04b433a6fb 100644 --- a/Dockerfile +++ b/Dockerfile @@ -5,7 +5,6 @@ FROM ubuntu:18.04 ENV DEBIAN_FRONTEND=noninteractive ENV REACT_APP_PROJECT_ID=search -ENV REACT_APP_ARRANGER_API=/api/v0/flat-search RUN apt-get update && apt-get install -y --no-install-recommends \ build-essential \ diff --git a/README.md b/README.md index be13177bc3..481308058a 100644 --- a/README.md +++ b/README.md @@ -78,30 +78,6 @@ deploy-time configuration. The `GEN3_BUNDLE` environment variable determines wh To run Storybook: `npm run storybook` - -To run with Arranger components *(DEPRECATED: we use Guppy powered explorer page and stop maintaining arranger powered version.)*: -1. Set local environment variables: - - $STORYBOOK_ARRANGER_API: localhost:3000 - - $STORYBOOK_PROJECT_ID: search - - $REACT_APP_ARRANGER_API: /api/v0/flat-search - - $REACT_APP_PROJECT_ID: search -2. Run ElasticSearch at localhost:9200 -3. Clone and `cd` into `gen3-arranger`. Run: -```cd Docker/Stacks -docker-compose -f esearch.yml up -d -export ESHOST=localhost:9200 -source esearch/indexSetup.sh -es_indices -es_delete_all -es_setup_index -es_gen_data 0 20 -``` -4. Follow the [Arranger](https://github.com/overture-stack/arranger) setup steps - run the server and the dashboard. -5. At the Arranger Dashboard (localhost:6060), add a new version called 'dev'. -6. Click on 'dev' and add a new index. Name: subject, Index: gen3-dev-subject, ES Type: subject. -7. Go back to Versions and hit the lightning bolt. The endpoint should go from a red arrow to a green arrow. -8. At this point, running the Data Portal from our Storybook should work. - ### Run Windmill using Docker Build the container image first ``` diff --git a/data/config/anvil.json b/data/config/anvil.json index 4d5143e0c1..3dc38ee577 100644 --- a/data/config/anvil.json +++ b/data/config/anvil.json @@ -144,12 +144,6 @@ } ] }, - "arrangerConfig": { - "projectId": "search", - "graphqlField": "case", - "index": "", - "nodeCountField": "node_id" - }, "table": { "enabled": true }, diff --git a/data/config/bhc.json b/data/config/bhc.json index b18c4ec303..73c58f5ec3 100644 --- a/data/config/bhc.json +++ b/data/config/bhc.json @@ -205,12 +205,6 @@ "experimental_group" ] }, - "arrangerConfig": { - "projectId": "search", - "graphqlField": "case", - "index": "", - "nodeCountField": "node_id" - }, "guppyConfig": { "dataType": "case", "nodeCountTitle": "Cases", diff --git a/data/config/default.json b/data/config/default.json index 3b9b452cf9..9774c1c7cb 100644 --- a/data/config/default.json +++ b/data/config/default.json @@ -188,12 +188,6 @@ "analysis": false }, "dataExplorerConfig": { - "arrangerConfig": { - "projectId": "search", - "graphqlField": "subject", - "index": "", - "nodeCountField": "node_id" - }, "charts": { "project": { "chartType": "count", diff --git a/data/config/gtex.json b/data/config/gtex.json index dbce313bb5..590ea47d06 100644 --- a/data/config/gtex.json +++ b/data/config/gtex.json @@ -287,18 +287,6 @@ "rightIcon": "download" } ], - "arrangerConfig": { - "projectId": "search", - "graphqlField": "subject", - "index": "", - "manifestMapping": { - "resourceIndexType": "file", - "resourceIdField": "object_id", - "referenceIdFieldInResourceIndex": "subject_id", - "referenceIdFieldInDataIndex": "subject_id" - }, - "nodeCountField": "subject_id" - }, "guppyConfig": { "dataType": "subject", "nodeCountTitle": "Subjects", @@ -341,7 +329,7 @@ }, "getAccessButtonLink": "https://dbgap.ncbi.nlm.nih.gov/", "terraExportURL": "https://bvdp-saturn-dev.appspot.com/#import-data", - "terraTemplate": [ + "terraTemplate": [ "bdc", "gen3" ] @@ -414,4 +402,4 @@ ], "dropdowns": {} } -} \ No newline at end of file +} diff --git a/data/config/kfDcfInterop.json b/data/config/kfDcfInterop.json index befecfd821..8eda92a592 100644 --- a/data/config/kfDcfInterop.json +++ b/data/config/kfDcfInterop.json @@ -155,12 +155,6 @@ } ] }, - "arrangerConfig": { - "projectId": "search", - "graphqlField": "case", - "index": "", - "nodeCountField": "node_id" - }, "table": { "enabled": true }, diff --git a/data/config/ncrdc-demo.json b/data/config/ncrdc-demo.json index 3d49a4d803..a6c36443b7 100644 --- a/data/config/ncrdc-demo.json +++ b/data/config/ncrdc-demo.json @@ -174,12 +174,6 @@ "rightIcon": "download", "fileName": "manifest.json" } - ], - "arrangerConfig": { - "projectId": "search", - "graphqlField": "subject", - "index": "", - "nodeCountField": "node_id" - } + ] } } diff --git a/data/config/va.json b/data/config/va.json index 07e5d51a5b..0fe17241ea 100644 --- a/data/config/va.json +++ b/data/config/va.json @@ -219,19 +219,6 @@ ], "table": { "enabled": true - }, - "arrangerConfig": { - "projectId": "search", - "graphqlField": "patients", - "index": "", - "nodeCountField": "Chicago_ID", - "manifestMapping": { - "resourceIndexType": "file", - "resourceIdField": "object_id", - "referenceIdFieldInResourceIndex": "case_id", - "referenceIdFieldInDataIndex": "object_id", - "divideKey": "data_type" - } } } } diff --git a/package-lock.json b/package-lock.json index 6319e0229b..43a5ef8c9b 100644 --- a/package-lock.json +++ b/package-lock.json @@ -90,101 +90,6 @@ "xss": "^1.0.6" } }, - "@arranger/components": { - "version": "0.4.19", - "resolved": "https://registry.npmjs.org/@arranger/components/-/components-0.4.19.tgz", - "integrity": "sha512-NikGy6vLBagG/yQVB1TIAQLh9WSBGTkrk+QQgp7lwBrHdxvOnUEKFhJvarVIIqc6nb99feOKCkhtWqLkFxzWlw==", - "requires": { - "@arranger/mapping-utils": "^0.4.19", - "ajv": "^6.1.1", - "babel-polyfill": "^6.26.0", - "classnames": "^2.2.5", - "convert-units": "^2.3.4", - "downshift": "^1.23.2", - "emotion": "^8.0.12", - "filesize": "^3.5.11", - "formik": "^0.11.11", - "graphiql": "^0.11.11", - "jsonpath": "^1.0.0", - "lodash": "^4.17.4", - "moment": "^2.21.0", - "pluralize": "^7.0.0", - "react-component-component": "^1.0.1", - "react-datepicker": "^1.4.1", - "react-grid-layout": "^0.16.5", - "react-icons": "^2.2.7", - "react-input-range": "^1.3.0", - "react-router-dom": "^4.2.2", - "react-scrollbar-size": "^2.1.0", - "react-spinkit": "^3.0.0", - "react-table": "^6.7.6", - "react-toastify": "^3.3.2", - "react-treeview": "^0.4.7", - "recompose": "^0.26.0", - "resolve-url": "^0.2.1", - "rxjs": "^5.5.6", - "semantic-ui-css": "^2.2.12", - "semantic-ui-react": "^0.77.2", - "socket.io-client": "^2.0.4", - "socket.io-stream": "^0.9.1", - "url-join": "^4.0.0", - "url-parse": "^1.2.0", - "uuid": "^3.2.1" - }, - "dependencies": { - "graphiql": { - "version": "0.11.11", - "resolved": "https://registry.npmjs.org/graphiql/-/graphiql-0.11.11.tgz", - "integrity": "sha512-+r8qY2JRRs+uaZcrZOxpNhdlCZoS8yS5KQ6X53Twc8WecZ6VtAn+MVHroLOd4u9HVPxTXZ9RUd9+556EpTc0xA==", - "requires": { - "codemirror": "^5.26.0", - "codemirror-graphql": "^0.6.11", - "markdown-it": "^8.4.0" - } - }, - "pluralize": { - "version": "7.0.0", - "resolved": "https://registry.npmjs.org/pluralize/-/pluralize-7.0.0.tgz", - "integrity": "sha512-ARhBOdzS3e41FbkW/XWrTEtukqqLoK5+Z/4UeDaLuSW+39JPeFgs4gCGqsrJHVZX0fUrx//4OF0K1CUGwlIFow==" - } - } - }, - "@arranger/mapping-utils": { - "version": "0.4.19", - "resolved": "https://registry.npmjs.org/@arranger/mapping-utils/-/mapping-utils-0.4.19.tgz", - "integrity": "sha512-EaK3DE/Mb/Wf+9cypo/f/DK2JJg4t8tElyMHgn0lxTU5/Dwk1N0zRubfCLUlTfa7iJh/0R3BQWX+fKQxqxuOLA==", - "requires": { - "@arranger/middleware": "^0.4.19", - "babel-polyfill": "^6.26.0", - "elasticsearch": "^14.0.0", - "graphql-fields": "^1.0.2", - "lodash": "^4.17.4", - "node-fetch": "^2.0.0", - "uuid": "^3.2.1" - }, - "dependencies": { - "node-fetch": { - "version": "2.6.1", - "resolved": "https://registry.npmjs.org/node-fetch/-/node-fetch-2.6.1.tgz", - "integrity": "sha512-V4aYg89jEoVRxRb2fJdAg8FHvI7cEyYdVAh94HH0UIK8oJxUfkjlDQN9RbMx+bEjP7+ggMiFRprSti032Oipxw==" - } - } - }, - "@arranger/middleware": { - "version": "0.4.19", - "resolved": "https://registry.npmjs.org/@arranger/middleware/-/middleware-0.4.19.tgz", - "integrity": "sha512-cCoLqUL/IBBgJiBDoh3q/P5MsAE6SXWwQoKKBEo8A1L/h1tsUtu29CADfWeIryLhJpiKpjWWbdFBaeFr1L5i3w==", - 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}, - "dependencies": { - "@babel/types": { - "version": "7.11.5", - "resolved": "https://registry.npmjs.org/@babel/types/-/types-7.11.5.tgz", - "integrity": "sha512-bvM7Qz6eKnJVFIn+1LPtjlBFPVN5jNDc1XmN15vWe7Q3DPBufWWsLiIvUu7xW87uTG6QoggpIDnUgLQvPheU+Q==", - "requires": { - "@babel/helper-validator-identifier": "^7.10.4", - "lodash": "^4.17.19", - "to-fast-properties": "^2.0.0" - } - } } }, "@babel/helper-builder-react-jsx-experimental": { @@ -343,26 +175,6 @@ "@babel/helper-annotate-as-pure": "^7.10.4", "@babel/helper-module-imports": "^7.10.4", "@babel/types": "^7.11.5" - }, - "dependencies": { - "@babel/helper-module-imports": { - "version": "7.10.4", - "resolved": "https://registry.npmjs.org/@babel/helper-module-imports/-/helper-module-imports-7.10.4.tgz", - "integrity": "sha512-nEQJHqYavI217oD9+s5MUBzk6x1IlvoS9WTPfgG43CbMEeStE0v+r+TucWdx8KFGowPGvyOkDT9+7DHedIDnVw==", - "requires": { - "@babel/types": "^7.10.4" - } - }, - "@babel/types": { - "version": "7.11.5", - "resolved": "https://registry.npmjs.org/@babel/types/-/types-7.11.5.tgz", - 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"integrity": "sha512-GIyAXC2cB7LjvpgMt9EKS2ldqr0MTrORaleiOno6TweZ6r3TKtoFQWay/2PceJ3RuBasOHzXNn5Lrw1X0bEjqA==", - "dev": true, - "requires": { - "async-limiter": "~1.0.0" - } - }, "yargs": { "version": "13.3.2", "resolved": "https://registry.npmjs.org/yargs/-/yargs-13.3.2.tgz", @@ -30271,6 +27683,25 @@ "integrity": "sha1-06ioOzGapneTZisT52HHkRQiMG4=", "dev": true }, + "ansi-styles": { + "version": "2.2.1", + "resolved": "https://registry.npmjs.org/ansi-styles/-/ansi-styles-2.2.1.tgz", + "integrity": "sha1-tDLdM1i2NM914eRmQ2gkBTPB3b4=", + "dev": true + }, + "chalk": { + "version": "1.1.3", + "resolved": "https://registry.npmjs.org/chalk/-/chalk-1.1.3.tgz", + "integrity": "sha1-qBFcVeSnAv5NFQq9OHKCKn4J/Jg=", + "dev": true, + "requires": { + "ansi-styles": "^2.2.1", + "escape-string-regexp": "^1.0.2", + "has-ansi": "^2.0.0", + "strip-ansi": "^3.0.0", + "supports-color": "^2.0.0" + } + }, "cli-cursor": { "version": "1.0.2", "resolved": "https://registry.npmjs.org/cli-cursor/-/cli-cursor-1.0.2.tgz", @@ -30357,6 +27788,12 @@ "onetime": "^1.0.0" } }, + "supports-color": { + "version": "2.0.0", + "resolved": "https://registry.npmjs.org/supports-color/-/supports-color-2.0.0.tgz", + "integrity": "sha1-U10EXOa2Nj+kARcIRimZXp3zJMc=", + "dev": true + }, "tmp": { "version": "0.0.29", "resolved": "https://registry.npmjs.org/tmp/-/tmp-0.0.29.tgz", @@ -30414,11 +27851,6 @@ "requires": { "ms": "^2.1.1" } - }, - "ms": { - "version": "2.1.2", - "resolved": "https://registry.npmjs.org/ms/-/ms-2.1.2.tgz", - "integrity": "sha512-sGkPx+VjMtmA6MX27oA4FBFELFCZZ4S4XqeGOXCv68tT+jb3vk/RyaKWP0PTKyWtmLSM0b+adUTEvbs1PEaH2w==" } } }, @@ -30447,9 +27879,9 @@ } }, "whatwg-fetch": { - "version": "2.0.4", - "resolved": "https://registry.npmjs.org/whatwg-fetch/-/whatwg-fetch-2.0.4.tgz", - "integrity": "sha512-dcQ1GWpOD/eEQ97k66aiEVpNnapVj90/+R+SXTPYGHpYBBypfKJEQjLrvMZ7YXbKm21gXd4NcuxUTjiv1YtLng==" + "version": "3.4.1", + "resolved": "https://registry.npmjs.org/whatwg-fetch/-/whatwg-fetch-3.4.1.tgz", + "integrity": "sha512-sofZVzE1wKwO+EYPbWfiwzaKovWiZXf4coEzjGP9b2GBVgQRLQUZ2QcuPpQExGDAW5GItpEm6Tl4OU5mywnAoQ==" }, "whatwg-mimetype": { "version": "2.3.0", @@ -30532,23 +27964,11 @@ } } }, - "winston": { - "version": "2.4.5", - "resolved": "https://registry.npmjs.org/winston/-/winston-2.4.5.tgz", - "integrity": "sha512-TWoamHt5yYvsMarGlGEQE59SbJHqGsZV8/lwC+iCcGeAe0vUaOh+Lv6SYM17ouzC/a/LB1/hz/7sxFBtlu1l4A==", - "requires": { - "async": "~1.0.0", - "colors": "1.0.x", - "cycle": "1.0.x", - "eyes": "0.1.x", - "isstream": "0.1.x", - "stack-trace": "0.0.x" - } - }, "word-wrap": { "version": "1.2.3", "resolved": "https://registry.npmjs.org/word-wrap/-/word-wrap-1.2.3.tgz", - "integrity": "sha512-Hz/mrNwitNRh/HUAtM/VT/5VH+ygD6DV7mYKZAtHOrbs8U7lvPS6xf7EJKMF0uW1KJCl0H701g3ZGus+muE5vQ==" + "integrity": "sha512-Hz/mrNwitNRh/HUAtM/VT/5VH+ygD6DV7mYKZAtHOrbs8U7lvPS6xf7EJKMF0uW1KJCl0H701g3ZGus+muE5vQ==", + "dev": true }, "worker-farm": { "version": "1.7.0", @@ -30600,9 +28020,9 @@ } }, "ws": { - "version": "6.1.4", - "resolved": "https://registry.npmjs.org/ws/-/ws-6.1.4.tgz", - "integrity": "sha512-eqZfL+NE/YQc1/ZynhojeV8q+H050oR8AZ2uIev7RU10svA9ZnJUddHcOUZTJLinZ9yEfdA2kSATS2qZK5fhJA==", + "version": "6.2.1", + "resolved": "https://registry.npmjs.org/ws/-/ws-6.2.1.tgz", + "integrity": "sha512-GIyAXC2cB7LjvpgMt9EKS2ldqr0MTrORaleiOno6TweZ6r3TKtoFQWay/2PceJ3RuBasOHzXNn5Lrw1X0bEjqA==", "requires": { "async-limiter": "~1.0.0" } @@ -30630,11 +28050,6 @@ "resolved": "https://registry.npmjs.org/xmlhttprequest/-/xmlhttprequest-1.8.0.tgz", "integrity": "sha1-Z/4HXFwk/vOfnWX197f+dRcZaPw=" }, - "xmlhttprequest-ssl": { - "version": "1.5.5", - "resolved": "https://registry.npmjs.org/xmlhttprequest-ssl/-/xmlhttprequest-ssl-1.5.5.tgz", - "integrity": "sha1-wodrBhaKrcQOV9l+gRkayPQ5iz4=" - }, "xss": { "version": "1.0.8", "resolved": "https://registry.npmjs.org/xss/-/xss-1.0.8.tgz", @@ -30817,11 +28232,6 @@ "decamelize": "^1.2.0" } }, - "yeast": { - "version": "0.1.2", - "resolved": "https://registry.npmjs.org/yeast/-/yeast-0.1.2.tgz", - "integrity": "sha1-AI4G2AlDIMNy28L47XagymyKxBk=" - }, "zen-observable": { "version": "0.8.15", "resolved": "https://registry.npmjs.org/zen-observable/-/zen-observable-0.8.15.tgz", diff --git a/package.json b/package.json index 5f17ad7f7a..39856f868f 100644 --- a/package.json +++ b/package.json @@ -5,7 +5,6 @@ "main": "index.js", "dependencies": { "@ant-design/icons": "^4.2.2", - "@arranger/components": "^0.4.15", "@babel/core": "^7.8.3", "@babel/polyfill": "^7.8.3", "@fortawesome/fontawesome-svg-core": "^1.2.2", @@ -141,12 +140,12 @@ }, "scripts": { "test": "jest", - "relay": "node ./data/gqlSetup.js > src/gqlHelper.js && relay-compiler --verbose --src src --exclude '**/generated/**' '**/Explorer/**' --schema ./data/schema.json --extensions js jsx", + "relay": "node ./data/gqlSetup.js > src/gqlHelper.js && relay-compiler --verbose --src src --exclude '**/generated/**' --schema ./data/schema.json --extensions js jsx", "schema": "node ./data/getSchema", "params": "node ./data/getTexts > src/params.js", "eslint": "./node_modules/.bin/eslint --ext js --ext jsx --ignore-pattern '**/__generated__/**' --ignore-pattern '**/*.min.js' --ignore-pattern '**/setupJest.js' --ignore-pattern '**/gqlHelper.js' --fix src data", "elint": "./node_modules/.bin/eslint --ext js --ext jsx --ignore-pattern '**/__generated__/**' --ignore-pattern '**/*.min.js' --ignore-pattern '**/setupJest.js'", - "storybook": "STORYBOOK_PROJECT_ID=search STORYBOOK_ARRANGER_API=http://localhost:3000 start-storybook -p 9001 -c .storybook", + "storybook": "STORYBOOK_PROJECT_ID=search start-storybook -p 9001 -c .storybook", "stylelint": "stylelint 'src/**/*.less' 'src/**/*.css' --config .stylelintrc.js --fix", "sanity-check": "node ./sanity-check" }, diff --git a/runWebpack.sh b/runWebpack.sh index 5cf15b4f7b..983ce48a95 100755 --- a/runWebpack.sh +++ b/runWebpack.sh @@ -152,10 +152,7 @@ if [[ "$GEN3_BUNDLE" != "workspace" ]]; then npm run sanity-check fi -# try to keep the arranger components in line -#export STORYBOOK_ARRANGER_API=localhost:3000 export STORYBOOK_PROJECT_ID=search -export REACT_APP_ARRANGER_API=/api/v0/flat-search export REACT_APP_PROJECT_ID=search export REACT_APP_DISABLE_SOCKET=true diff --git a/src/Arranger/AggregationTabs.jsx b/src/Arranger/AggregationTabs.jsx deleted file mode 100644 index 1f7ea1e0c3..0000000000 --- a/src/Arranger/AggregationTabs.jsx +++ /dev/null @@ -1,126 +0,0 @@ -import React from 'react'; -import PropTypes from 'prop-types'; -import { AggsState, AggsQuery } from '@arranger/components/dist/Aggs'; -import aggComponents from '@arranger/components/dist/Aggs/aggComponentsMap.js'; -import FilterGroup from '@gen3/ui-component/dist/components/filters/FilterGroup/.'; - -/* -* The AggregationTabs component divides the Arranger aggregations components into -* tabs - Arranger divides the data into fields, and allows the user -* to filter on those fields. We are using it to divide the aggregations into -* the different tabs we need on our filters. -* Tabs and the fields in each tab are specified in params.js, and this component -* will use that configuration to divide the aggregations into tabs. -*/ - -class AggregationTabs extends React.Component { - render() { - const { - api, - className, - componentProps, - containerRef, - filterConfig, - graphqlField, - onTermSelected, - projectId, - setSQON, - sqon, - style, - } = this.props; - return ( -
- { - const aggs = aggsState.aggs.filter(agg => agg.show); - // Dividing data into tabs - const tabs = []; - filterConfig.tabs.forEach((tab, i) => { - const sections = []; - tab.fields.forEach((field) => { - const section = aggs.find(agg => agg.field === field); - if (section) { - sections.push(section); - } - }); - tabs.push( - /* eslint-disable */ - - data && - aggs - .map(agg => ({ - ...agg, - ...data[graphqlField].aggregations[agg.field], - ...data[graphqlField].extended.find( - elt => elt.field.replace(/\./g, '__') === agg.field, - ), - key: agg.field, - containerRef, - onValueChange: ({ sqon, value }) => { - onTermSelected(value); - setSQON(sqon); - }, - sqon, - })) - .map((agg) => { - if (aggComponents[agg.type]) { - return (aggComponents[agg.type]({ ...agg, ...componentProps })); - } - return null; - }) - } - />, - /* eslint-enable */ - ); - }); - return ( - - ); - } - } - /> -
- ); - } -} - -AggregationTabs.propTypes = { - className: PropTypes.string, - onTermSelected: PropTypes.func, - setSQON: PropTypes.func.isRequired, - filterConfig: PropTypes.object.isRequired, - sqon: PropTypes.object, - projectId: PropTypes.string.isRequired, - graphqlField: PropTypes.string.isRequired, - api: PropTypes.func.isRequired, - style: PropTypes.object, - containerRef: PropTypes.string, - componentProps: PropTypes.object, -}; - -AggregationTabs.defaultProps = { - className: '', - onTermSelected: () => {}, - sqon: null, - style: null, - containerRef: null, - componentProps: { - getTermAggProps: () => ({}), - getRangeAggProps: () => ({}), - getBooleanAggProps: () => ({}), - getDatesAggProps: () => ({}), - }, -}; - -export default AggregationTabs; diff --git a/src/Arranger/AggregationTabs.test.jsx b/src/Arranger/AggregationTabs.test.jsx deleted file mode 100644 index 228006db70..0000000000 --- a/src/Arranger/AggregationTabs.test.jsx +++ /dev/null @@ -1,49 +0,0 @@ -import React from 'react'; -import { mount } from 'enzyme'; -import AggregationTabs from './AggregationTabs'; - -describe('AggregationTabs', () => { - const filterConfig = { - tabs: [{ - title: 'Project', - fields: [ - 'project', - 'study', - ], - }, - { - title: 'Subject', - fields: [ - 'race', - 'ethnicity', - 'gender', - 'vital_status', - ], - }, - { - title: 'File', - fields: [ - 'file_type', - ], - }], - }; - - - const component = mount( - , - ); - - it('renders', () => { - expect(component.find(AggregationTabs).length).toBe(1); - }); - - it('divides into tabs based on config', () => { - expect(component.find('.g3-filter-group__tab').length).toBe(filterConfig.tabs.length); - }); -}); diff --git a/src/Arranger/ArrangerWrapper.jsx b/src/Arranger/ArrangerWrapper.jsx deleted file mode 100644 index eb8718f827..0000000000 --- a/src/Arranger/ArrangerWrapper.jsx +++ /dev/null @@ -1,100 +0,0 @@ -import React from 'react'; -import PropTypes from 'prop-types'; -import { Arranger } from '@arranger/components/dist/Arranger'; -import { AggsState, AggsQuery } from '@arranger/components/dist/Aggs'; -import arrangerApi from './utils'; - -/* -* The ArrangerWrapper component can be used to get props and data from Arranger -* into our custom components. It will pass props and data to all the children -* that it is wrapped around, so for example: -* -*
Hello world!
-* -* The
would now have all the Arranger props as well as access to the queried data. -* Most Arranger components need all of these props. They include: -* api - a function created by Arranger to fetch data. -* arrangerData - a custom prop added so our components can use the Arranger data. -* fetchData - a function created by Arranger for the data table (if present). -* graphqlField - the field Arranger should query. -* index - the index Arranger should query. -* projectId - the projectId used in the graphQL API call. -* selectedTableRows - the selected rows in the data table (if present). -* setSQON - a function from Arranger used to update SQON when filters are selected. -* setSelectedTableRows - a function from Arranger to updated selected data table rows (if present). -* socket - a function from Arranger in which they use web sockets. -* sqon - the current SQON being used to query. -*/ - -class ArrangerWrapper extends React.Component { - filterAggregationFields = (aggs) => { - if (this.props.charts) { - const fields = aggs.filter(agg => Object.keys(this.props.charts).includes(agg.field)); - if (fields.length > 0) { - return fields; - } else if (aggs.length > 0) { // else all the aggs were filtered, and things are screwed up - console.log('Bad props.charts data - ignoring in aggregations filters'); // eslint-disable-line no-console - } - } - return aggs.filter(agg => agg.field !== 'name'); - }; - - renderComponent = props => ( - React.Children.map(this.props.children, child => - React.cloneElement(child, { ...props }, - ), - ) - ); - - render() { - return ( - ( - ( - ( - - {this.renderComponent({ ...arrangerArgs, arrangerData: data })} - - )} - /> - ) - } - - - /> - )} - /> - ); - } -} - -ArrangerWrapper.propTypes = { - index: PropTypes.string.isRequired, - graphqlField: PropTypes.string.isRequired, - projectId: PropTypes.string.isRequired, - charts: PropTypes.object, - children: PropTypes.oneOfType([ - PropTypes.object, - PropTypes.array, - ]).isRequired, -}; - -ArrangerWrapper.defaultProps = { - charts: null, -}; - -export default ArrangerWrapper; diff --git a/src/Arranger/ArrangerWrapper.test.jsx b/src/Arranger/ArrangerWrapper.test.jsx deleted file mode 100644 index 9ac0560406..0000000000 --- a/src/Arranger/ArrangerWrapper.test.jsx +++ /dev/null @@ -1,40 +0,0 @@ -import React from 'react'; -import { mount } from 'enzyme'; -import ArrangerWrapper from './ArrangerWrapper'; - -describe('ArrangerWrapper', () => { - it('renders', () => { - const component = mount( - -
- , - ); - expect(component.find(ArrangerWrapper).length).toBe(1); - }); - - it('uses renderComponent to send props to its children', () => { - const component = mount( - -
- , - ); - const { children } = component.instance().props; - const { renderComponent } = component.instance(); - expect(children.props.className).toBe('test'); - const clones = renderComponent({ arg1: 'arg1', arg2: 'arg2' }); - expect(clones.length).toBe(1); - expect(clones[0].props.className).toBe(children.props.className); - expect(clones[0].props.arg1).toBe('arg1'); - expect(clones[0].props.arg2).toBe('arg2'); - }); -}); diff --git a/src/Arranger/utils.js b/src/Arranger/utils.js deleted file mode 100644 index 61048161b0..0000000000 --- a/src/Arranger/utils.js +++ /dev/null @@ -1,12 +0,0 @@ -import urlJoin from 'url-join'; -import { ARRANGER_API } from '@arranger/components/dist/utils/config'; - -const arrangerApi = ({ endpoint, headers, body }) => - fetch(urlJoin(ARRANGER_API, endpoint || ''), { - method: 'POST', - headers: { 'Content-Type': 'application/json', ...headers }, - body: JSON.stringify(body), - credentials: 'include', - }).then(res => res.json()); - -export default arrangerApi; diff --git a/src/DataExplorer/DataExplorer.less b/src/DataExplorer/DataExplorer.less deleted file mode 100644 index 8785d00b82..0000000000 --- a/src/DataExplorer/DataExplorer.less +++ /dev/null @@ -1,469 +0,0 @@ -@import '~@gen3/ui-component/dist/css/base.less'; - -.data-explorer { - display: flex; - margin: 17px 0 34px 0; - padding: 20px 20px; -} - -.data-explorer__filters { - width: 20%; -} - -.data-explorer__visualizations { - display: flex; - flex-flow: column; - padding-left: 20px; - width: 80%; -} - -.data-explorer__charts { - display: flex; - flex-flow: column; - z-index: 1; // for tooltip -} - -.data-explorer__charts > div { - margin-bottom: 6px; -} - -.data-explorer__charts > div:last-child { - margin-bottom: 34px; -} - -.data-explorer__button-section { - display: flex; - flex-flow: row; - margin-bottom: 20px; -} - -.data-explorer__button-section > * { - margin-right: 10px; -} - -.data-explorer__download-button { - margin-right: 10px; - min-width: 220px; - display: flex; - justify-content: center; - border-radius: 4px; -} - -.data-explorer__toaster-div { - display: flex; - align-items: center; - flex-direction: row-reverse; -} - -.data-explorer__toaster-button { - margin-right: 10px; -} - -.data-explorer__toaster-text { - color: var(--g3-color__white); - margin-right: 20px; - width: unset; - font-size: medium; -} - -/* Overrides Arranger Aggregation styles */ -.aggregation-card { - padding: 12px 12px; - background: white; - border-top: 1px solid @silver; -} - -.aggregation-card .title-wrapper { - display: flex; - align-items: center; - color: #404c9a; -} - -.aggregation-card .title-wrapper .title { - font-size: 14px; - font-weight: @semi-bold; - color: @black; - margin-left: 5px; -} - -.aggregation-card .filter { - padding: 7px 0; -} - -.aggregation-card input[type='checkbox'] { - cursor: pointer; - -webkit-appearance: none; - -moz-appearance: none; - appearance: none; - outline: 0; - background: @white; - height: 18px; - width: 18px; - border: 1px solid @light_gray; - border-radius: 2px; - pointer-events: none; - margin-right: 5px; - flex-shrink: 0; - vertical-align: middle; -} - -.aggregation-card input[type='checkbox']:checked { - background: @orange; -} - -// defines check in checkbox -.aggregation-card input[type='checkbox']:after { - content: ''; - position: relative; - left: 40%; - top: 20%; - width: 15%; - height: 40%; - border: solid @white; - border-width: 0 2px 2px 0; - transform: rotate(45deg); - display: none; -} - -.aggregation-card input[type='checkbox']:checked:after { - display: block; -} - -.aggregation-card .showMore-wrapper { - font-size: 12px; - color: @blue; - margin: 5px 0 0 5px; - cursor: pointer; - display: flex; - align-items: center; - justify-content: flex-end; -} - -.aggregation-card .filter .showMore-wrapper { - margin-left: 5px; - margin-top: 0; -} - -.showMore-wrapper.more::before, -.showMore-wrapper.less::before { - content: ''; -} - -.aggregation-card .bucket { - font-size: 14px; - color: @gray; -} - -.aggregation-card .bucket-item { - padding: 6px 0; - cursor: pointer; - display: flex; - align-items: center; - justify-content: space-between; -} - -.aggregation-card .bucket-item .bucket-count { - font-size: 14px; - font-weight: @semi-bold; - color: @blue; - background-color: @silver; - border-radius: 2px; - padding: 0 0; - justify-content: center; - display: flex; - align-items: center; - margin-left: 6px; - padding: 0 5px; -} - -.aggregation-card .bucket-item .bucket-link { - display: flex; - align-items: center; -} - -.aggregation-card .bucket-item .bucket-link .textHighlight { - word-break: break-word; -} - -.aggregation-card .arrow { - color: @light_gray; -} - -.aggregation-card .action-icon { - display: flex; -} - -.aggregation-card .action-icon svg { - fill: @light_gray; -} - - -/* Overrides Arranger CurrentSQON styles */ -.sqon-view { - background-color: @cloud; - border: 0; - padding: 0; - margin: 0 0 20px 0; -} - -.sqon-group { - flex-wrap: wrap; -} - -.sqon-group:first-child { - margin-top: 0; -} - -.sqon-group > * { - margin-top: 10px; -} - -.sqon-view-empty { - display: none; -} - -.sqon-bubble, -.sqon-less, -.sqon-more { - display: flex; - align-items: center; - height: 30px; - border-radius: 10.5px; - font-size: 12px; - font-weight: 300; - letter-spacing: 0.2px; - margin-right: 6px; - flex: none; -} - -.sqon-clear, -.sqon-less, -.sqon-more { - padding: 0 15px; - color: white; - background-color: white; - cursor: pointer; -} - -.sqon-more, -.sqon-less { - border: 1px solid @light_gray; - color: @blue; - margin-right: 6px; -} - -.sqon-more { - font-size: 24px; - display: block; - line-height: 1rem; -} - -.sqon-value { - background-color: @orange; - border: 1px solid @light_gray; - color: white; - padding: 0 7px 0 12px; - margin-right: 4px; - cursor: pointer; -} - -.sqon-value:after { - content: url(data:image/svg+xml,%3Csvg%20width%3D%228%22%20height%3D%228%22%20stroke%3D%22white%22%20xmlns%3D%22http%3A//www.w3.org/2000/svg%22%3E%0A%20%20%3Cline%20x1%3D%220%22%20y1%3D%220%22%20x2%3D%228%22%20y2%3D%228%22%20/%3E%0A%20%20%3Cline%20x1%3D%228%22%20y1%3D%220%22%20x2%3D%220%22%20y2%3D%228%22%20/%3E%0A%3C/svg%3E); - margin-left: 9px; -} - -.sqon-value-single { - margin-right: 10px; -} - -.sqon-clear { - border: 1px solid @light_gray; - color: @white; - background-color: @blue; -} - -.sqon-field, -.sqon-op { - font-size: 12px; - color: @gray; -} - -.sqon-op { - font-weight: normal; - margin-right: 5px; -} - -.sqon-field { - font-weight: 600; - margin-right: 0.3rem; -} - -.sqon-value-group { - color: @blue; - font-size: 22px; - line-height: 22px; -} - -.sqon-value-group-start { - margin-right: 6px; - margin-left: 8px; -} - -.sqon-value-group-end { - margin-right: 10px; -} - -/* Overrides Arranger input styles */ -.inputWrapper .inputIcon { - margin-right: 10px; - color: #a9adc0; -} - -.inputWrapper .inputRightIcon { - color: #a9adc0; - font-size: 20px; -} - -.inputWrapper { - background: white; - border-radius: 10px; -} - -.inputWrapper input { - font-size: 12px; -} - -/* Overrides Arranger quick search */ -.quick-search-pinned-value { - margin-bottom: 10px; -} - -.quick-search-pinned-value > * { - display: inline-flex; -} - -.quick-search-results { - box-shadow: 1px 1px 1px 0 rgba(0, 0, 0, 0.43); -} - -.quick-search-result { - display: flex; - align-items: center; - background: white; -} - -.quick-search-result:hover { - box-shadow: inset 0 0 15px 0 rgba(0, 0, 0, 0.1); -} - -.quick-search-result:hover, -.quick-search-result:nth-child(even) { - background-color: #f4f5f8; -} - -.quick-search-result-entity { - border-radius: 50%; - width: 14%; - margin: 6px; - display: flex; - align-items: center; - justify-content: center; -} - -.quick-search-result-entity:before { - content: ''; - float: left; - padding-top: 100%; -} - -.quick-search-result-details { - overflow: hidden; -} - -.quick-search-result-key { - font-size: 0.9em; -} - -.quick-search-result-value { - overflow: hidden; - text-overflow: ellipsis; - font-size: 0.7em; - white-space: nowrap; -} - -.quick-search-result-entity-1 { - background-color: #a42c90; -} - -.quick-search-result-entity-2 { - background-color: #00afed; -} - -.quick-search-result-entity-3 { - background-color: #ff9324; -} - -.quick-search-result-entity-4 { - background-color: #009bb8; -} - -.quick-search-result-entity-5 { - background-color: #d8202f; -} - -/* Overrides Arranger Match Box */ -.match-box-id-form > * { - margin-bottom: 1.5em; -} -.match-box-id-form textarea { - min-height: 100px; -} -.match-box-select-entity-form { - margin-bottom: 20px; -} - -/* Overrides Arranger dropdowns */ -.dropDownHeader { - display: flex; -} - -.dropDownHeader .dropDownButton { - border: none; -} - -.input-range-wrapper > div:nth-last-child(-n+2) { - height: 0; - visibility: hidden; -} - -.input-range__slider { - background: @cloud; - border-radius: 2px; - border: 1px solid @light_gray; - width: 10px; - height: 18px; -} - -.input-range__track--active { - background: @orange; - height: 6px; - border-radius: 2px; -} - -.input-range__label-container { - left: -80%; - font-size: 12px; - font-weight: regular; - line-height: 1em; - letter-spacing: .03rem; - color: @gray; -} - -.data-explorer__dropdown { - width: 220px; -} - -/* Override tooltip width */ -.rc-tooltip-inner { - max-width: 250px; -} diff --git a/src/DataExplorer/DataExplorer.test.jsx b/src/DataExplorer/DataExplorer.test.jsx deleted file mode 100644 index 150d183dba..0000000000 --- a/src/DataExplorer/DataExplorer.test.jsx +++ /dev/null @@ -1,10 +0,0 @@ -import React from 'react'; -import { mount } from 'enzyme'; -import DataExplorer from '.'; - -describe('DataExplorer', () => { - it('renders', () => { - const component = mount(); - expect(component.find(DataExplorer).length).toBe(1); - }); -}); diff --git a/src/DataExplorer/DataExplorerFilters.jsx b/src/DataExplorer/DataExplorerFilters.jsx deleted file mode 100644 index b706b619ce..0000000000 --- a/src/DataExplorer/DataExplorerFilters.jsx +++ /dev/null @@ -1,34 +0,0 @@ -import React from 'react'; -import PropTypes from 'prop-types'; -import { Aggregations } from '@arranger/components/dist/Arranger'; -import AggregationTabs from '../Arranger/AggregationTabs'; - -class DataExplorerFilters extends React.Component { - render() { - const filterConfig = this.props.dataExplorerConfig.filters; - return ( -
- { - filterConfig ? - - : - } -
- ); - } -} - -DataExplorerFilters.propTypes = { - arrangerData: PropTypes.object, - dataExplorerConfig: PropTypes.object, -}; - -DataExplorerFilters.defaultProps = { - arrangerData: null, - dataExplorerConfig: {}, -}; - -export default DataExplorerFilters; diff --git a/src/DataExplorer/DataExplorerFilters.test.jsx b/src/DataExplorer/DataExplorerFilters.test.jsx deleted file mode 100644 index a98fc1c893..0000000000 --- a/src/DataExplorer/DataExplorerFilters.test.jsx +++ /dev/null @@ -1,67 +0,0 @@ -import React from 'react'; -import { mount } from 'enzyme'; -import DataExplorerFilters from './DataExplorerFilters'; - -describe('DataExplorerFilters', () => { - const filterConfig = { - tabs: [{ - title: 'Project', - fields: [ - 'project', - 'study', - ], - }, - { - title: 'Subject', - fields: [ - 'race', - 'ethnicity', - 'gender', - 'vital_status', - ], - }, - { - title: 'File', - fields: [ - 'file_type', - ], - }], - }; - - const props = { - graphqlField: '', - projectId: '', - setSQON: jest.fn(), - api: jest.fn(), - }; - - const componentWithFilters = mount( - , - ); - - const componentWithoutFilters = mount( - , - ); - - it('renders', () => { - expect(componentWithFilters.find(DataExplorerFilters).length).toBe(1); - expect(componentWithoutFilters.find(DataExplorerFilters).length).toBe(1); - }); - - it('shows tabs when config is provided', () => { - expect(componentWithFilters.find('AggregationTabs').length).toBe(1); - expect(componentWithFilters.find('Aggregations').length).toBe(0); - expect(componentWithFilters.find('.g3-filter-group__tab').length).toBe(filterConfig.tabs.length); - }); - - it('doesnt show tabs when config is not provided', () => { - expect(componentWithoutFilters.find('Aggregations').length).toBe(1); - expect(componentWithoutFilters.find('AggregationTabs').length).toBe(0); - expect(componentWithoutFilters.find('.g3-filter-group__tab').length).toBe(0); - }); -}); diff --git a/src/DataExplorer/DataExplorerVisualizations.jsx b/src/DataExplorer/DataExplorerVisualizations.jsx deleted file mode 100644 index bfdb0a4160..0000000000 --- a/src/DataExplorer/DataExplorerVisualizations.jsx +++ /dev/null @@ -1,358 +0,0 @@ -import React from 'react'; -import PropTypes from 'prop-types'; -import { CurrentSQON } from '@arranger/components/dist/Arranger'; -import Button from '@gen3/ui-component/dist/components/Button'; -import Dropdown from '@gen3/ui-component/dist/components/Dropdown'; -import Toaster from '@gen3/ui-component/dist/components/Toaster'; -import SummaryChartGroup from '@gen3/ui-component/dist/components/charts/SummaryChartGroup'; -import PercentageStackedBarChart from '@gen3/ui-component/dist/components/charts/PercentageStackedBarChart'; -import Spinner from '../components/Spinner'; -import DataExplorerTable from '../components/tables/DataExplorerTable'; -import DataSummaryCardGroup from '../components/cards/DataSummaryCardGroup/.'; -import { getCharts } from '../components/charts/helper'; -import { downloadManifest, downloadData, getManifestEntryCount, exportToWorkspace } from './actionHelper'; -import { calculateDropdownButtonConfigs, humanizeNumber } from './utils'; -import { exportAllSelectedDataToCloud } from './custom/bdbag'; -import { components } from '../params'; - -class DataExplorerVisualizations extends React.Component { - constructor(props) { - super(props); - this.state = { - manifestEntryCount: 0, - exportInProgress: false, - exportFileName: null, - toasterOpen: false, - exportStatus: null, - toasterSuccessText: 'Your cohort has been saved! In order to view and run analysis on this cohort, please go to the workspace.', - toasterErrorText: 'There was an error exporting your cohort.', - nodeIds: [], - }; - } - - componentWillReceiveProps(nextProps) { - if (nextProps.arrangerData !== this.props.arrangerData) { - const arrangerConfig = nextProps.dataExplorerConfig.arrangerConfig; - const data = nextProps.arrangerData && - nextProps.arrangerData[arrangerConfig.graphqlField]; - const aggregations = data && data.aggregations ? data.aggregations : null; - const nodeIds = aggregations[arrangerConfig.nodeCountField].buckets.map(bucket => bucket.key); - this.setState({ nodeIds }, () => { - this.refreshManifestEntryCount(this.state.nodeIds); - }); - } - } - - onDownloadManifest = fileName => () => { - downloadManifest( - this.props.api, - this.props.projectId, - this.state.nodeIds, - this.props.dataExplorerConfig.arrangerConfig, - fileName, - ); - } - - onDownloadData = fileName => () => { - downloadData( - this.props.api, - this.props.projectId, - this.props.dataExplorerConfig.arrangerConfig.nodeCountField, - this.state.nodeIds, - this.props.dataExplorerConfig.arrangerConfig, - fileName, - ); - } - - onExportToCloud = () => { - exportAllSelectedDataToCloud( - this.props.api, - this.props.projectId, - this.props.dataExplorerConfig.arrangerConfig.nodeCountField, - this.state.nodeIds, - this.props.dataExplorerConfig.arrangerConfig, - ); - } - - onExportToWorkspace = () => () => { - this.setState({ exportInProgress: true }); - exportToWorkspace( - this.props.api, - this.props.projectId, - this.state.nodeIds, - this.props.dataExplorerConfig.arrangerConfig, - this.exportToWorkspaceCallback, - this.exportToWorkspaceErrorCallback, - ); - } - - getOnClickFunction = (buttonConfig) => { - let clickFunc = () => {}; - if (buttonConfig.type === 'data') { - clickFunc = this.onDownloadData(buttonConfig.fileName); - } - if (buttonConfig.type === 'manifest') { - clickFunc = this.onDownloadManifest(buttonConfig.fileName); - } - if (buttonConfig.type === 'export') { - clickFunc = this.onExportToCloud; - } - if (buttonConfig.type === 'export-to-workspace') { - clickFunc = this.onExportToWorkspace(); - } - return clickFunc; - } - - goToWorkspace = () => { - this.props.history.push('/workspace'); - } - - closeToaster = () => { - this.setState({ toasterOpen: false }); - } - - isToasterOpen = () => this.state.toasterOpen - - exportToWorkspaceErrorCallback = (status, errorText) => { - this.setState({ - toasterOpen: true, - exportStatus: status, - exportInProgress: false, - toasterErrorText: errorText, - }); - } - - exportToWorkspaceCallback = (data) => { - this.setState({ - toasterOpen: true, - exportStatus: 200, - exportInProgress: false, - exportFileName: data.filename, - }); - } - isFileButton = buttonConfig => buttonConfig.type === 'manifest' || - buttonConfig.type === 'export' || - buttonConfig.type === 'export-to-workspace'; - - refreshManifestEntryCount = () => { - if (this.props.dataExplorerConfig - && this.props.dataExplorerConfig.buttons - && this.props.dataExplorerConfig.buttons.some( - btnCfg => this.isFileButton(btnCfg) && btnCfg.enabled) - ) { - getManifestEntryCount( - this.props.api, - this.props.projectId, - this.state.nodeIds, - this.props.dataExplorerConfig.arrangerConfig, - ).then((r) => { - this.setState({ manifestEntryCount: r }); - }); - } - } - - isButtonEnabled = (buttonConfig) => { - if (buttonConfig.type === 'manifest') { - return this.state.nodeIds.length > 0 && this.state.manifestEntryCount > 0; - } - if (buttonConfig.type === 'export-to-workspace') { - return this.state.nodeIds.length > 0 && this.state.manifestEntryCount > 0; - } - return this.state.nodeIds.length > 0; - } - - isButtonPending = (buttonConfig) => { - if (buttonConfig.type === 'export-to-workspace') { - return this.state.exportInProgress; - } - return false; - } - - renderButton = (buttonConfig) => { - const clickFunc = this.getOnClickFunction(buttonConfig); - let buttonTitle = buttonConfig.title; - if (this.isFileButton(buttonConfig) && this.state.nodeIds.length > 0) { - buttonTitle = `${buttonConfig.title} (${humanizeNumber(this.state.manifestEntryCount)})`; - } else if (buttonConfig.type === 'data') { - buttonTitle = `${buttonConfig.title} (${humanizeNumber(this.state.nodeIds.length)})`; - } - - return (