ci: update Python version support and dependencies

- Add Python 3.13 to the list of supported versions
- Update pre-commit hooks to the latest versions:
  - pre-commit/pre-commit-hooks from v4.6.0 to v5.0.0
  - astral-sh/ruff-pre-commit from v0.6.7 to v0.7.0
  - pre-commit/mirrors-mypy from v1.11.2 to v1.12.1
  - python-jsonschema/check-jsonschema from v0.29.2 to v0.29.4
- Remove version tag from manylinux_2_28_x86_64 image

Author: Liu Xue Yan

.github/workflows/python-package.yml

@@ -32,7 +32,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12", "3.13"]
     steps:
       - name: Checkout
         uses: actions/checkout@v4

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.6.0
+    rev: v5.0.0
     hooks:
       - id: check-case-conflict
       - id: check-added-large-files
@@ -20,7 +20,7 @@ repos:
       - id: check-docstring-first
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.6.7
+    rev: v0.7.0
     hooks:
       - id: ruff # Run the linter.
         types_or: [python, pyi, jupyter]
@@ -29,14 +29,14 @@ repos:
         types_or: [python, pyi, jupyter]
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: "v1.11.2"
+    rev: "v1.12.1"
     hooks:
       - id: mypy
         args: [--ignore-missing-imports, --config-file, .mypy.ini]
         additional_dependencies: [types-PyYAML]
 
   - repo: https://github.com/python-jsonschema/check-jsonschema
-    rev: "0.29.2"
+    rev: "0.29.4"
     hooks:
       - id: check-github-workflows
       - id: check-readthedocs

tests/docker-compose.yml

@@ -2,7 +2,7 @@ name: pyyaml_include-tests
 
 services:
   unittest:
-    image: quay.io/pypa/manylinux_2_28_x86_64:latest
+    image: quay.io/pypa/manylinux_2_28_x86_64
     volumes:
       - type: bind
         source: ..

tests/run-compose-test.sh

@@ -5,7 +5,7 @@ export PIP_DISABLE_PIP_VERSION_CHECK=1
 export PIP_ROOT_USER_ACTION=ignore
 export PIP_NO_WARN_SCRIPT_LOCATION=1
 
-PYTHON_LIST=(python3.8 python3.9 python3.10 python3.11 python3.12)
+PYTHON_LIST=(python3.8 python3.9 python3.10 python3.11 python3.12 python3.13)
 for PYTHON in ${PYTHON_LIST[@]}
 do
     echo