Update before CRAN Resubmission

Author: tacazares

.Rbuildignore

@@ -9,3 +9,5 @@
 ^README.Rmd
 ^LICENSE.md
 ^cran-comments.md
+^doc$
+^Meta$

.gitignore

@@ -6,3 +6,5 @@
 .httr-oauth
 .DS_Store
 docs
+/doc/
+/Meta/

NEWS.md

@@ -1,5 +1,6 @@
 # SeedMatchR 1.1.0
 
+* Addressed some notes and errors from CRAN check https://www.r-project.org/nosvn/R.check/r-release-macos-arm64/SeedMatchR-00check.html
 * Removed the function `dtat_histogram.R`. This was not needed. We no longer
 perform this bootstrapping method for testing. We use the built-in R functions 
 `ks.test` and `wilcoxen.test`. 

README.Rmd

@@ -144,7 +144,7 @@ Required Inputs:
 -   `res`: DESeq2 results data frame
 -   `gene.lists`: A list of lists containing gene names
 
-```{r fig.height=5, fig.width=5, out.retina=1}
+```{r fig.height=5, fig.width=6, out.retina=1}
 # Gene set 1 
 mer7m8.list = res$gene_id[res$mer7m8 >= 1]
 

cran-comments.md

@@ -1,5 +1,12 @@
 ## Resubmission
 
+### 10/02/2023 - Addressing Build Issues from CRAN Checks
+
+> We were notified of build errors from the CRAN site, but were not able to 
+address them in time. https://cran.r-project.org/web/packages/SeedMatchR/index.html
+
+These tests are passing through GitHub actions now: https://github.com/tacazares/SeedMatchR/actions/runs/6381425186
+
 ### 06/19/2023 - Addressing Initial CRAN Recommendations
 
 > If there are references describing the methods in your package, please

man/figures/README-unnamed-chunk-13-1.png

@@ -27,7 +27,7 @@ abstract: >
 knitr::opts_chunk$set(
   collapse = TRUE,
   comment = "#>",
-  eval = TRUE
+  eval = FALSE
 )
 ```