- Platomes_ExaML_toMatchNuc.AA.160725.BestBS100.tre: Nexus plastid tree
- nuc-to-plast.txt: mappings names from other trees to plastid
- plast-to-nuc.txt: mapping names from plastid tee to other trees
- plastid-renamed-withsupport.noUAUU.rerooted.tre: Newick plastid tree