Merge pull request #7 from simonprovost/refactor/uv_migration

.github/workflows/documentation-deploy.yaml

@@ -5,26 +5,33 @@ on:
       - main
     paths:
       - 'docs/**'
+
 permissions:
   contents: write
+
 jobs:
   deploy:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
+
       - name: Configure Git Credentials
         run: |
           git config user.name github-actions[bot]
           git config user.email 41898282+github-actions[bot]@users.noreply.github.com
-      - uses: actions/setup-python@v5
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v4
         with:
-          python-version: 3.x
-      - run: echo "cache_id=$(date --utc '+%V')" >> $GITHUB_ENV
-      - uses: actions/cache@v4
-        with:
-          key: mkdocs-material-${{ env.cache_id }}
-          path: .cache
-          restore-keys: |
-            mkdocs-material-
-      - run: pip install mkdocs-material==9.5.27 mkdocs-get-deps==0.2.0 mkdocs-material[imaging] mkdocs-material-extensions==1.3.1 mkdocs-minify-plugin==0.8.0
-      - run: mkdocs gh-deploy --force --remote-branch gh-pages
+          version: "0.5.11"
+          enable-cache: true
+          cache-dependency-glob: "docs/**"
+          python-version: "cpython-3.9.21-linux-x86_64-gnu"
+
+      - name: Install mkdocs deps
+        run: |
+          uv sync --only-group doc
+
+      - name: Deploy Docs
+        run: |
+          uv run mkdocs gh-deploy --force --remote-branch gh-pages

.github/workflows/publish-pypi.yaml

@@ -5,60 +5,50 @@ on:
     branches:
       - main
 
+permissions:
+  contents: read
+
 jobs:
   check_build_trigger:
     name: Check build trigger
     runs-on: ubuntu-latest
     outputs:
       build: ${{ steps.check_build_trigger.outputs.build }}
-
     steps:
       - name: Checkout auto-sklong
         uses: actions/checkout@v4
         with:
           ref: ${{ github.event.pull_request.head.sha }}
 
       - id: check_build_trigger
-        name: Check build trigger
+        name: Run check_build_trigger.sh
         run: bash build_tools/github/check_build_trigger.sh
 
   unit_testing:
-    runs-on: ${{ matrix.os }}
-    needs: check_build_trigger
-    if: needs.check_build_trigger.outputs.build
-    strategy:
-      matrix:
-        python-version: [ 3.9 ]
-        os: [ ubuntu-latest ]
-
+    runs-on: ubuntu-latest
     steps:
-      - name: Set up Python
-        uses: actions/setup-python@v2
-        with:
-          python-version: '3.9'
-
-      - name: Checkout this repository
-        uses: actions/checkout@v2
+      - uses: actions/checkout@v4
 
-      - uses: pdm-project/setup-pdm@main
-        name: Setup PDM
+      - name: Install uv & Python
+        uses: astral-sh/setup-uv@v4
         with:
-          python-version: 3.9
-          architecture: x64
-          prerelease: false
-          enable-pep582: true
+          version: "0.5.11"
+          enable-cache: true
+          python-version: "cpython-3.9.21-linux-x86_64-gnu"
 
-      - name: Install dependencies from pdm.lock
+      - name: Lock & Sync All Dependencies
         run: |
-          pdm install
+          uv lock
+          uv sync --all-groups
 
-      - name: Run tests
-        run: pdm run tests
+      - name: Run Tests Unit
+        run: |
+          uv run pytest -sv tests/unit
 
   pypi-publish:
-    name: ☁️ upload release to PyPI
+    name: ☁️ upload release to TestPyPI
     runs-on: ubuntu-latest
-    needs: [check_build_trigger, unit_testing]
+    needs: [ check_build_trigger, unit_testing ]
     if: |
       always() &&
       needs.check_build_trigger.outputs.build &&
@@ -67,9 +57,26 @@ jobs:
       contents: read
       id-token: write
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
-      - uses: pdm-project/setup-pdm@v3
+      - name: Install uv & Python
+        uses: astral-sh/setup-uv@v4
+        with:
+          version: "0.5.11"
+          enable-cache: true
+          python-version: "cpython-3.9.21-linux-x86_64-gnu"
+
+      - name: Lock & Sync for Release
+        run: |
+          uv lock
+          uv sync --all-groups
 
-      - name: Publish package distributions to PyPI
-        run: pdm publish
+      - name: Build distribution
+        run: |
+          uv build
+
+      - name: Publish package to PyPI
+        env:
+          UV_PUBLISH_TOKEN: ${{ secrets.PYPI_API_TOKEN }}
+        run: |
+          uv publish

.github/workflows/pytest.yaml

@@ -1,68 +1,35 @@
-name: pytest
+name: ci-tests
+
 on:
   workflow_dispatch:
   pull_request:
 
-jobs:
-  unit:
-    strategy:
-      fail-fast: false
-      matrix:
-        python-version: ["3.9", "3.10"]
-        os: [ubuntu-latest]
-    runs-on: ${{ matrix.os }}
 
-    steps:
-      - name: Set up Python
-        uses: actions/setup-python@v2
-        with:
-          python-version: ${{ matrix.python-version }}
+permissions:
+  contents: read
 
-      - name: Checkout this repository
-        uses: actions/checkout@v3
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
 
-      - uses: pdm-project/setup-pdm@main
-        name: Setup PDM
+      - name: Install uv & Python
+        uses: astral-sh/setup-uv@v4
         with:
-          architecture: x64
-          prerelease: false
-          enable-pep582: true
+          version: "0.5.11"
+          enable-cache: true
+          python-version: "cpython-3.9.21-linux-x86_64-gnu"
 
-      - name: Install dependencies from pdm.lock
+      - name: Lock & Sync All Dependencies
         run: |
-          pdm install --dev
-
-      - name: Run tests
-        run: pdm run tests_unit
-
-  system:
-    strategy:
-      fail-fast: false
-      matrix:
-        python-version: ["3.9"]
-        os: [ubuntu-latest]
+          uv lock
+          uv sync --all-groups
 
-    runs-on: ${{ matrix.os }}
-
-    steps:
-      - name: Set up Python
-        uses: actions/setup-python@v2
-        with:
-          python-version: ${{ matrix.python-version }}
-
-      - name: Checkout this repository
-        uses: actions/checkout@v3
-
-      - uses: pdm-project/setup-pdm@main
-        name: Setup PDM
-        with:
-          architecture: x64
-          prerelease: false
-          enable-pep582: true
-
-      - name: Install dependencies from pdm.lock
+      - name: Run Tests Unit
         run: |
-          pdm install --dev
+          uv run pytest -sv tests/unit
 
-      - name: Run tests
-        run: pdm run tests_system
+      - name: Run Tests System
+        run: |
+          uv run pytest -sv tests/system

.github/workflows/test-with-pre.yaml

@@ -1,41 +1,38 @@
 name: Test --pre
+
 on:
   workflow_dispatch:
   schedule:
     - cron: "00 0 * * 1"
 
 jobs:
   unit:
+    name: Run tests with prereleases
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.9", "3.10"]
+        python-version: ["3.9.21"]
         os: [ubuntu-latest]
-
     runs-on: ${{ matrix.os }}
 
     steps:
-      - name: Set up Python
-        uses: actions/setup-python@v2
-        with:
-          python-version: ${{ matrix.python-version }}
-
-      - name: Checkout this repository
-        uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
-      - uses: pdm-project/setup-pdm@main
-        name: Setup PDM
+      - name: Install uv & Python
+        uses: astral-sh/setup-uv@v4
         with:
-          architecture: x64
-          prerelease: false
-          enable-pep582: true
-          use-cache: false
-          pip-args: "--pre"
-          pytest-args: "-W error -W ignore::sklearn.exceptions.ConvergenceWarning"
+          version: "0.5.11"
+          enable-cache: true
+          python-version: "cpython-3.9.21-linux-x86_64-gnu"
 
-      - name: Install dependencies from pdm.lock
+      - name: Lock dependencies with pre-releases
         run: |
-          pdm install --dev
+          uv lock --prerelease allow
+
+      - name: Sync All Groups
+        run: |
+          uv sync --all-groups
 
       - name: Run tests
-        run: pdm run tests_unit
+        run: |
+          uv run pytest -sv tests/unit