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‎.gitignore

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# Windows image file caches
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Thumbs.db
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ehthumbs.db
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# Folder config file
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Desktop.ini
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# Recycle Bin used on file shares
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$RECYCLE.BIN/
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# Windows Installer files
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*.cab
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*.msi
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*.msm
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*.msp
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# Windows shortcuts
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*.lnk
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# =========================
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# Operating System Files
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# =========================
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# OSX
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# =========================
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.DS_Store
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.AppleDouble
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.LSOverride
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# Thumbnails
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._*
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# Files that might appear on external disk
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.Spotlight-V100
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.Trashes
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# Directories potentially created on remote AFP share
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.AppleDB
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.AppleDesktop
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Network Trash Folder
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Temporary Items
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.apdisk
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/build32
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/build64
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/build
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/release
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/dist
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/install*
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/vs*

‎CMakeLists.txt

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###############################################################################
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#
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# Description : CMake build script for libSBML dependencies
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# Original author(s): Frank Bergmann <fbergman@caltech.edu>
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# Organization : California Institute of Technology
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#
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# This file is part of libSBML. Please visit http://sbml.org for more
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# information about SBML, and the latest version of libSBML.
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#
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# Copyright 2005-2011 California Institute of Technology.
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# Copyright 2002-2005 California Institute of Technology and
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# Japan Science and Technology Corporation.
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#
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# This library is free software; you can redistribute it and/or modify it
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# under the terms of the GNU Lesser General Public License as published by
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# the Free Software Foundation. A copy of the license agreement is provided
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# in the file named "LICENSE.txt" included with this software distribution
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# and also available online as http://sbml.org/software/libsbml/license.html
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#
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###############################################################################
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cmake_minimum_required(VERSION 2.8)
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project(libsbml_dependencies)
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include (CMakeTestCCompiler)
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include (CheckCSourceCompiles)
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include (CheckCXXSourceCompiles)
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include (CheckStructHasMember)
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include (CheckLibraryExists)
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include (CheckFunctionExists)
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include (CheckCCompilerFlag)
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include (CheckCSourceRuns)
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include (CheckSymbolExists)
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include (CheckTypeSize)
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###############################################################################
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#
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# Parse VERSION.txt to determine the package version
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#
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SET(DEPENDENCIES_VERSION_MAJOR)
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SET(DEPENDENCIES_VERSION_MINOR)
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SET(DEPENDENCIES_VERSION_PATCH)
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SET(DEPENDENCIES_VERSION_RELEASE)
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if (EXISTS "${CMAKE_CURRENT_SOURCE_DIR}/VERSION.txt")
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file(STRINGS "${CMAKE_CURRENT_SOURCE_DIR}/VERSION.txt" VersionString NEWLINE_CONSUME)
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string(STRIP "${VersionString}" VersionString)
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string(REPLACE "." ";" VersionString "${VersionString}" )
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string(REPLACE "-" ";" VersionString "${VersionString}" )
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list(LENGTH VersionString versionLength)
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list(GET VersionString 0 DEPENDENCIES_VERSION_MAJOR )
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list(GET VersionString 1 DEPENDENCIES_VERSION_MINOR )
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list(GET VersionString 2 DEPENDENCIES_VERSION_PATCH )
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if (${versionLength} GREATER 3)
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list(GET VersionString 3 DEPENDENCIES_VERSION_RELEASE )
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endif()
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endif()
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SET(PACKAGE_VERSION "${DEPENDENCIES_VERSION_MAJOR}.${DEPENDENCIES_VERSION_MINOR}.${DEPENDENCIES_VERSION_PATCH}-${DEPENDENCIES_VERSION_RELEASE}")
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###############################################################################
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#
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# the next lines configure the parameters for packaging the binaries
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# they can be invoked with: make package / nmake package or by using
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# cpack -G zip|deb|rpm|dmg|nsis
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#
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INCLUDE(InstallRequiredSystemLibraries)
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SET(CPACK_PACKAGE_DESCRIPTION_SUMMARY "Dependencies for libsbml (bz2, check, expat, iconv, libxml2, xerces-c, zlib")
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SET(CPACK_PACKAGE_NAME "libSBML Dependencies")
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SET(CPACK_PACKAGE_VENDOR "The SBML Team")
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SET(CPACK_PACKAGE_CONTACT "LibSBML Team <libsbml-team@caltech.edu>")
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SET(CPACK_PACKAGE_DESCRIPTION_FILE "${CMAKE_CURRENT_SOURCE_DIR}/README.txt")
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SET(CPACK_RESOURCE_FILE_LICENSE "${CMAKE_CURRENT_SOURCE_DIR}/COPYING.txt")
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# version for this dependencies release
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SET(CPACK_PACKAGE_VERSION_MAJOR "${DEPENDENCIES_VERSION_MAJOR}")
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SET(CPACK_PACKAGE_VERSION_MINOR "${DEPENDENCIES_VERSION_MINOR}")
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SET(CPACK_PACKAGE_VERSION_PATCH "${DEPENDENCIES_VERSION_PATCH}")
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SET(CPACK_PACKAGE_VERSION "${PACKAGE_VERSION}")
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INCLUDE(CPack)
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###############################################################################
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#
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# Here we have the main configuration options for libsbml
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#
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# build static / shared library
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option(BUILD_SHARED_LIBS "Build shared library (Set to OFF to build static libraries)" OFF)
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# choose the xml parsing library to be used
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option(WITH_BZIP2 "Compile BZ2 compression library" ON )
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option(WITH_CHECK "Compile libcheck unit test library" ON )
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option(WITH_EXPAT "Compile Expat XML parser" ON )
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option(WITH_ZLIB "Compile zlib compression library" ON )
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if (WITH_BZIP2)
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add_subdirectory(bzip2)
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endif()
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if (WITH_CHECK)
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add_subdirectory(check)
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endif()
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if (WITH_EXPAT)
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add_subdirectory(expat)
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endif()
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if (WIN32)
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option(WITH_XERCES "Compile xerces XML parser" ON )
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option(WITH_ICONV "Compile libiconv" ON )
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option(WITH_LIBXML "Compile libxml XML parser" ON )
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if (WITH_ICONV)
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add_subdirectory(libiconv)
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endif()
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if (WITH_LIBXML)
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add_subdirectory(libxml2)
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endif()
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if (WITH_XERCES)
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add_subdirectory(xerces-c)
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endif()
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endif()
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if (WITH_ZLIB)
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add_subdirectory(zlib)
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endif()
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###############################################################################
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# misc variables
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#
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if(UNIX)
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set(PATH_SEP "/")
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set(FILE_SEP ":")
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else()
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set(PATH_SEP "\\")
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set(FILE_SEP ";")
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endif()
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###############################################################################
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#
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# Set up remaining variables, add option for universal binaries
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#
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set(BUILD_DEFINITIONS)
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if(UNIX)
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if(APPLE)
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add_definitions(-DMACOSX)
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set(BUILD_DEFINITIONS "${BUILD_DEFINITIONS} -DMACOSX")
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# On OSX it is common to build universal binaries to support multiple
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# processor architectures. The default behavior is not to build
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# multiple architectures, as most users might not need that.
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option(ENABLE_UNIVERSAL "Create Universal Binaries" OFF)
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set(CMAKE_OSX_ARCHITECTURES "${CMAKE_OSX_ARCHITECTURES}" CACHE STRING "A semicolon separated list of build architectures to be used")
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if(ENABLE_UNIVERSAL)
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# if universal binaries are requested and none defined so far
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# overwrite them with all three common architectures. If the user
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# specified their own list of architectures do not touch!
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if (CMAKE_OSX_ARCHITECTURES STREQUAL "")
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set(CMAKE_OSX_ARCHITECTURES "i386;ppc;x86_64" CACHE STRING "A semicolon separated list of build architectures to be used" FORCE)
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endif()
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endif(ENABLE_UNIVERSAL)
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else(APPLE)
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add_definitions(-DLINUX)
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if (NOT CYGWIN)
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# on cygwin all code is position independent so -fPIC is not needed
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set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fno-strict-aliasing -fPIC")
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set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -fno-strict-aliasing -fPIC")
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endif()
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set(BUILD_DEFINITIONS "${BUILD_DEFINITIONS} -DLINUX")
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endif(APPLE)
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add_definitions( -DPACKAGE_VERSION=\"${PACKAGE_VERSION}\" -DPACKAGE_NAME=\"${PROJECT_NAME}\")
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set(BUILD_DEFINITIONS "${BUILD_DEFINITIONS} -DPACKAGE_VERSION=\"${PACKAGE_VERSION}\" -DPACKAGE_NAME=\"${PROJECT_NAME}\"")
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else(UNIX)
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add_definitions(-DWIN32 -DLIBSBML_EXPORTS -DLIBLAX_EXPORTS)
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set(BUILD_DEFINITIONS "${BUILD_DEFINITIONS} -DWIN32 -DLIBSBML_EXPORTS -DLIBLAX_EXPORTS")
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if(MSVC)
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add_definitions(-D_CRT_SECURE_NO_WARNINGS -D_CRT_NONSTDC_NO_DEPRECATE)
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set(BUILD_DEFINITIONS "${BUILD_DEFINITIONS} -D_CRT_SECURE_NO_WARNINGS")
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option(WITH_STATIC_RUNTIME "Compile using the static MSVC Runtime" OFF)
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if (WITH_STATIC_RUNTIME)
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foreach(flag_var
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CMAKE_CXX_FLAGS CMAKE_CXX_FLAGS_DEBUG CMAKE_CXX_FLAGS_RELEASE
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CMAKE_CXX_FLAGS_MINSIZEREL CMAKE_CXX_FLAGS_RELWITHDEBINFO
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CMAKE_C_FLAGS CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE
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CMAKE_C_FLAGS_MINSIZEREL CMAKE_C_FLAGS_RELWITHDEBINFO)
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if(${flag_var} MATCHES "/MD")
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string(REGEX REPLACE "/MD" "/MT" ${flag_var} "${${flag_var}}")
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endif(${flag_var} MATCHES "/MD")
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endforeach(flag_var)
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add_definitions( -D_MT)
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endif(WITH_STATIC_RUNTIME)
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# CMake no longer creates PDB files for static libraries after 2.8.11
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# so we store debug information in the object files instead
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if (${CMAKE_VERSION} VERSION_GREATER "2.8.11")
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foreach(flag_var
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CMAKE_CXX_FLAGS CMAKE_CXX_FLAGS_DEBUG CMAKE_CXX_FLAGS_RELEASE
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CMAKE_CXX_FLAGS_MINSIZEREL CMAKE_CXX_FLAGS_RELWITHDEBINFO
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CMAKE_C_FLAGS CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE
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CMAKE_C_FLAGS_MINSIZEREL CMAKE_C_FLAGS_RELWITHDEBINFO)
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if(${flag_var} MATCHES "/Zi")
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STRING(REPLACE "/Zi" "/Z7" "${flag_var}" "${${flag_var}}")
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endif(${flag_var} MATCHES "/Zi")
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endforeach(flag_var)
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endif()
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file(GLOB WIN32_BINARIES ${CMAKE_SOURCE_DIR}/dependencies/bin/*.dll)
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INSTALL(FILES ${WIN32_BINARIES} DESTINATION bin)
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elseif(CYGWIN)
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add_definitions(-DCYGWIN)
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set(BUILD_DEFINITIONS "${BUILD_DEFINITIONS} -DCYGWIN")
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elseif(MINGW)
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if(WITH_LIBXML)
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# this is necessary to build with libxml2 on mingw
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add_definitions(-DLIBXML_STATIC)
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endif(WITH_LIBXML)
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endif(MSVC)
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endif(UNIX)
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###############################################################################
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#
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# Disable in-source build
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#
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if("${CMAKE_SOURCE_DIR}" STREQUAL "${CMAKE_BINARY_DIR}" )
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message(FATAL_ERROR "In-source builds have been disabled. Please create a separate build directory.")
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endif()
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if (CMAKE_BUILD_TYPE STREQUAL "")
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# CMake defaults to leaving CMAKE_BUILD_TYPE empty. This screws up
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# differentiation between debug and release builds.
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set(CMAKE_BUILD_TYPE "RelWithDebInfo" CACHE STRING "Choose the type of build, options are: None (CMAKE_CXX_FLAGS or CMAKE_C_FLAGS used) Debug Release RelWithDebInfo MinSizeRel." FORCE)
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endif ()
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if (NOT UNIX)
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# Create debug libraries with _d postfix
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set(CMAKE_DEBUG_POSTFIX "_d")
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endif ()
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if (APPLE)
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if (CMAKE_OSX_ARCHITECTURES STREQUAL "")
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message(STATUS " Building universal binaries = no (using native arch)")
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else()
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list(REMOVE_DUPLICATES CMAKE_OSX_ARCHITECTURES)
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list(REMOVE_ITEM CMAKE_OSX_ARCHITECTURES "")
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list(SORT CMAKE_OSX_ARCHITECTURES)
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list(LENGTH CMAKE_OSX_ARCHITECTURES NUM_ARCHS)
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if (NUMARCHS EQUAL 1)
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message(STATUS " Building universal binaries = no (using ${CMAKE_OSX_ARCHITECTURES})")
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else()
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message(STATUS " Building universal binaries = yes (using ${CMAKE_OSX_ARCHITECTURES})")
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endif()
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endif()
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endif()

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