Compare our scNODE model with baselines on three scRNA-seq datasets.
The preprocessed data can be downloaded from here.
You can put preprocessed data in the data directory, otherwise, you should specify the data file path in ./BenchmarkUtils.py.
- 1_SingleCell_scNODE.py: Run scNODE model.
- 2_SingleCell_PRESCIENT.py: Run PRESCIENT model.
- 3_SingleCell_MIOFlow.py: Run MIOFlow model.
Comparison of predictions are provided in ../plotting/Compare_SingleCell_Predictions.py.