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generic.py
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import collections
from datetime import timedelta
import functools
import gc
import json
import operator
import pickle
import re
from textwrap import dedent
from typing import (
Any,
Callable,
Dict,
FrozenSet,
Hashable,
List,
Mapping,
Optional,
Sequence,
Set,
Tuple,
Union,
)
import warnings
import weakref
import numpy as np
from pandas._config import config
from pandas._libs import Timestamp, iNaT, lib, properties
from pandas._typing import Dtype, FilePathOrBuffer, FrameOrSeries, JSONSerializable
from pandas.compat import set_function_name
from pandas.compat._optional import import_optional_dependency
from pandas.compat.numpy import function as nv
from pandas.errors import AbstractMethodError
from pandas.util._decorators import Appender, Substitution, rewrite_axis_style_signature
from pandas.util._validators import (
validate_bool_kwarg,
validate_fillna_kwargs,
validate_percentile,
)
from pandas.core.dtypes.common import (
ensure_int64,
ensure_object,
ensure_str,
is_bool,
is_bool_dtype,
is_datetime64_any_dtype,
is_datetime64tz_dtype,
is_dict_like,
is_extension_array_dtype,
is_float,
is_integer,
is_list_like,
is_number,
is_numeric_dtype,
is_object_dtype,
is_period_arraylike,
is_re_compilable,
is_scalar,
is_timedelta64_dtype,
pandas_dtype,
)
from pandas.core.dtypes.generic import ABCDataFrame, ABCSeries
from pandas.core.dtypes.inference import is_hashable
from pandas.core.dtypes.missing import isna, notna
import pandas as pd
from pandas.core import missing, nanops
import pandas.core.algorithms as algos
from pandas.core.base import PandasObject, SelectionMixin
import pandas.core.common as com
from pandas.core.construction import create_series_with_explicit_dtype
from pandas.core.indexes.api import (
Index,
InvalidIndexError,
MultiIndex,
RangeIndex,
ensure_index,
)
from pandas.core.indexes.datetimes import DatetimeIndex
from pandas.core.indexes.period import Period, PeriodIndex
import pandas.core.indexing as indexing
from pandas.core.internals import BlockManager
from pandas.core.missing import find_valid_index
from pandas.core.ops import _align_method_FRAME
from pandas.io.formats import format as fmt
from pandas.io.formats.format import DataFrameFormatter, format_percentiles
from pandas.io.formats.printing import pprint_thing
from pandas.tseries.frequencies import to_offset
# goal is to be able to define the docs close to function, while still being
# able to share
_shared_docs: Dict[str, str] = dict()
_shared_doc_kwargs = dict(
axes="keywords for axes",
klass="Series/DataFrame",
axes_single_arg="int or labels for object",
args_transpose="axes to permute (int or label for object)",
optional_by="""
by : str or list of str
Name or list of names to sort by""",
)
# sentinel value to use as kwarg in place of None when None has special meaning
# and needs to be distinguished from a user explicitly passing None.
sentinel = object()
def _single_replace(self, to_replace, method, inplace, limit):
"""
Replaces values in a Series using the fill method specified when no
replacement value is given in the replace method
"""
if self.ndim != 1:
raise TypeError(
f"cannot replace {to_replace} with method {method} on a "
f"{type(self).__name__}"
)
orig_dtype = self.dtype
result = self if inplace else self.copy()
fill_f = missing.get_fill_func(method)
mask = missing.mask_missing(result.values, to_replace)
values = fill_f(result.values, limit=limit, mask=mask)
if values.dtype == orig_dtype and inplace:
return
result = pd.Series(values, index=self.index, dtype=self.dtype).__finalize__(self)
if inplace:
self._update_inplace(result._data)
return
return result
bool_t = bool # Need alias because NDFrame has def bool:
class NDFrame(PandasObject, SelectionMixin):
"""
N-dimensional analogue of DataFrame. Store multi-dimensional in a
size-mutable, labeled data structure
Parameters
----------
data : BlockManager
axes : list
copy : bool, default False
"""
_internal_names: List[str] = [
"_data",
"_cacher",
"_item_cache",
"_cache",
"_is_copy",
"_subtyp",
"_name",
"_index",
"_default_kind",
"_default_fill_value",
"_metadata",
"__array_struct__",
"__array_interface__",
]
_internal_names_set: Set[str] = set(_internal_names)
_accessors: Set[str] = set()
_deprecations: FrozenSet[str] = frozenset(["get_values", "ix"])
_metadata: List[str] = []
_is_copy = None
_data: BlockManager
_attrs: Dict[Optional[Hashable], Any]
_typ: str
# ----------------------------------------------------------------------
# Constructors
def __init__(
self,
data: BlockManager,
axes: Optional[List[Index]] = None,
copy: bool = False,
dtype: Optional[Dtype] = None,
attrs: Optional[Mapping[Optional[Hashable], Any]] = None,
fastpath: bool = False,
):
if not fastpath:
if dtype is not None:
data = data.astype(dtype)
elif copy:
data = data.copy()
if axes is not None:
for i, ax in enumerate(axes):
data = data.reindex_axis(ax, axis=i)
object.__setattr__(self, "_is_copy", None)
object.__setattr__(self, "_data", data)
object.__setattr__(self, "_item_cache", {})
if attrs is None:
attrs = {}
else:
attrs = dict(attrs)
object.__setattr__(self, "_attrs", attrs)
def _init_mgr(self, mgr, axes=None, dtype=None, copy=False):
""" passed a manager and a axes dict """
for a, axe in axes.items():
if axe is not None:
mgr = mgr.reindex_axis(
axe, axis=self._get_block_manager_axis(a), copy=False
)
# make a copy if explicitly requested
if copy:
mgr = mgr.copy()
if dtype is not None:
# avoid further copies if we can
if len(mgr.blocks) > 1 or mgr.blocks[0].values.dtype != dtype:
mgr = mgr.astype(dtype=dtype)
return mgr
# ----------------------------------------------------------------------
@property
def attrs(self) -> Dict[Optional[Hashable], Any]:
"""
Dictionary of global attributes on this object.
"""
if self._attrs is None:
self._attrs = {}
return self._attrs
@attrs.setter
def attrs(self, value: Mapping[Optional[Hashable], Any]) -> None:
self._attrs = dict(value)
def _validate_dtype(self, dtype):
""" validate the passed dtype """
if dtype is not None:
dtype = pandas_dtype(dtype)
# a compound dtype
if dtype.kind == "V":
raise NotImplementedError(
"compound dtypes are not implemented"
f" in the {type(self).__name__} constructor"
)
return dtype
# ----------------------------------------------------------------------
# Construction
@property
def _constructor(self):
"""Used when a manipulation result has the same dimensions as the
original.
"""
raise AbstractMethodError(self)
@property
def _constructor_sliced(self):
"""Used when a manipulation result has one lower dimension(s) as the
original, such as DataFrame single columns slicing.
"""
raise AbstractMethodError(self)
@property
def _constructor_expanddim(self):
"""Used when a manipulation result has one higher dimension as the
original, such as Series.to_frame()
"""
raise NotImplementedError
# ----------------------------------------------------------------------
# Axis
_AXIS_ALIASES = {"rows": 0}
_AXIS_IALIASES = {0: "rows"}
_stat_axis_number = 0
_stat_axis_name = "index"
_ix = None
_AXIS_ORDERS: List[str]
_AXIS_NUMBERS: Dict[str, int]
_AXIS_NAMES: Dict[int, str]
_AXIS_REVERSED: bool
_info_axis_number: int
_info_axis_name: str
_AXIS_LEN: int
@classmethod
def _setup_axes(cls, axes: List[str], docs: Dict[str, str]):
"""
Provide axes setup for the major PandasObjects.
Parameters
----------
axes : the names of the axes in order (lowest to highest)
docs : docstrings for the axis properties
"""
info_axis = len(axes) - 1
axes_are_reversed = len(axes) > 1
cls._AXIS_ORDERS = axes
cls._AXIS_NUMBERS = {a: i for i, a in enumerate(axes)}
cls._AXIS_LEN = len(axes)
cls._AXIS_NAMES = dict(enumerate(axes))
cls._AXIS_REVERSED = axes_are_reversed
cls._info_axis_number = info_axis
cls._info_axis_name = axes[info_axis]
# setup the actual axis
def set_axis(a, i):
setattr(cls, a, properties.AxisProperty(i, docs.get(a, a)))
cls._internal_names_set.add(a)
if axes_are_reversed:
for i, a in cls._AXIS_NAMES.items():
set_axis(a, 1 - i)
else:
for i, a in cls._AXIS_NAMES.items():
set_axis(a, i)
def _construct_axes_dict(self, axes=None, **kwargs):
"""Return an axes dictionary for myself."""
d = {a: self._get_axis(a) for a in (axes or self._AXIS_ORDERS)}
d.update(kwargs)
return d
@staticmethod
def _construct_axes_dict_from(self, axes, **kwargs):
"""Return an axes dictionary for the passed axes."""
d = {a: ax for a, ax in zip(self._AXIS_ORDERS, axes)}
d.update(kwargs)
return d
def _construct_axes_from_arguments(
self, args, kwargs, require_all: bool = False, sentinel=None
):
"""Construct and returns axes if supplied in args/kwargs.
If require_all, raise if all axis arguments are not supplied
return a tuple of (axes, kwargs).
sentinel specifies the default parameter when an axis is not
supplied; useful to distinguish when a user explicitly passes None
in scenarios where None has special meaning.
"""
# construct the args
args = list(args)
for a in self._AXIS_ORDERS:
# look for a argument by position
if a not in kwargs:
try:
kwargs[a] = args.pop(0)
except IndexError:
if require_all:
raise TypeError("not enough/duplicate arguments specified!")
axes = {a: kwargs.pop(a, sentinel) for a in self._AXIS_ORDERS}
return axes, kwargs
@classmethod
def _from_axes(cls, data, axes, **kwargs):
# for construction from BlockManager
if isinstance(data, BlockManager):
return cls(data, **kwargs)
else:
if cls._AXIS_REVERSED:
axes = axes[::-1]
d = cls._construct_axes_dict_from(cls, axes, copy=False)
d.update(kwargs)
return cls(data, **d)
@classmethod
def _get_axis_number(cls, axis):
axis = cls._AXIS_ALIASES.get(axis, axis)
if is_integer(axis):
if axis in cls._AXIS_NAMES:
return axis
else:
try:
return cls._AXIS_NUMBERS[axis]
except KeyError:
pass
raise ValueError(f"No axis named {axis} for object type {cls}")
@classmethod
def _get_axis_name(cls, axis):
axis = cls._AXIS_ALIASES.get(axis, axis)
if isinstance(axis, str):
if axis in cls._AXIS_NUMBERS:
return axis
else:
try:
return cls._AXIS_NAMES[axis]
except KeyError:
pass
raise ValueError(f"No axis named {axis} for object type {cls}")
def _get_axis(self, axis):
name = self._get_axis_name(axis)
return getattr(self, name)
@classmethod
def _get_block_manager_axis(cls, axis):
"""Map the axis to the block_manager axis."""
axis = cls._get_axis_number(axis)
if cls._AXIS_REVERSED:
m = cls._AXIS_LEN - 1
return m - axis
return axis
def _get_axis_resolvers(self, axis):
# index or columns
axis_index = getattr(self, axis)
d = dict()
prefix = axis[0]
for i, name in enumerate(axis_index.names):
if name is not None:
key = level = name
else:
# prefix with 'i' or 'c' depending on the input axis
# e.g., you must do ilevel_0 for the 0th level of an unnamed
# multiiindex
key = f"{prefix}level_{i}"
level = i
level_values = axis_index.get_level_values(level)
s = level_values.to_series()
s.index = axis_index
d[key] = s
# put the index/columns itself in the dict
if isinstance(axis_index, MultiIndex):
dindex = axis_index
else:
dindex = axis_index.to_series()
d[axis] = dindex
return d
def _get_index_resolvers(self):
d = {}
for axis_name in self._AXIS_ORDERS:
d.update(self._get_axis_resolvers(axis_name))
return d
def _get_space_character_free_column_resolvers(self):
"""Return the space character free column resolvers of a dataframe.
Column names with spaces are 'cleaned up' so that they can be referred
to by backtick quoting.
Used in :meth:`DataFrame.eval`.
"""
from pandas.core.computation.common import _remove_spaces_column_name
return {_remove_spaces_column_name(k): v for k, v in self.items()}
@property
def _info_axis(self):
return getattr(self, self._info_axis_name)
@property
def _stat_axis(self):
return getattr(self, self._stat_axis_name)
@property
def shape(self) -> Tuple[int, ...]:
"""
Return a tuple of axis dimensions
"""
return tuple(len(self._get_axis(a)) for a in self._AXIS_ORDERS)
@property
def axes(self):
"""
Return index label(s) of the internal NDFrame
"""
# we do it this way because if we have reversed axes, then
# the block manager shows then reversed
return [self._get_axis(a) for a in self._AXIS_ORDERS]
@property
def ndim(self) -> int:
"""
Return an int representing the number of axes / array dimensions.
Return 1 if Series. Otherwise return 2 if DataFrame.
See Also
--------
ndarray.ndim : Number of array dimensions.
Examples
--------
>>> s = pd.Series({'a': 1, 'b': 2, 'c': 3})
>>> s.ndim
1
>>> df = pd.DataFrame({'col1': [1, 2], 'col2': [3, 4]})
>>> df.ndim
2
"""
return self._data.ndim
@property
def size(self):
"""
Return an int representing the number of elements in this object.
Return the number of rows if Series. Otherwise return the number of
rows times number of columns if DataFrame.
See Also
--------
ndarray.size : Number of elements in the array.
Examples
--------
>>> s = pd.Series({'a': 1, 'b': 2, 'c': 3})
>>> s.size
3
>>> df = pd.DataFrame({'col1': [1, 2], 'col2': [3, 4]})
>>> df.size
4
"""
return np.prod(self.shape)
@property
def _selected_obj(self: FrameOrSeries) -> FrameOrSeries:
""" internal compat with SelectionMixin """
return self
@property
def _obj_with_exclusions(self: FrameOrSeries) -> FrameOrSeries:
""" internal compat with SelectionMixin """
return self
def set_axis(self, labels, axis=0, inplace=False):
"""
Assign desired index to given axis.
Indexes for column or row labels can be changed by assigning
a list-like or Index.
.. versionchanged:: 0.21.0
The signature is now `labels` and `axis`, consistent with
the rest of pandas API. Previously, the `axis` and `labels`
arguments were respectively the first and second positional
arguments.
Parameters
----------
labels : list-like, Index
The values for the new index.
axis : {0 or 'index', 1 or 'columns'}, default 0
The axis to update. The value 0 identifies the rows, and 1
identifies the columns.
inplace : bool, default False
Whether to return a new %(klass)s instance.
Returns
-------
renamed : %(klass)s or None
An object of same type as caller if inplace=False, None otherwise.
See Also
--------
DataFrame.rename_axis : Alter the name of the index or columns.
Examples
--------
**Series**
>>> s = pd.Series([1, 2, 3])
>>> s
0 1
1 2
2 3
dtype: int64
>>> s.set_axis(['a', 'b', 'c'], axis=0)
a 1
b 2
c 3
dtype: int64
**DataFrame**
>>> df = pd.DataFrame({"A": [1, 2, 3], "B": [4, 5, 6]})
Change the row labels.
>>> df.set_axis(['a', 'b', 'c'], axis='index')
A B
a 1 4
b 2 5
c 3 6
Change the column labels.
>>> df.set_axis(['I', 'II'], axis='columns')
I II
0 1 4
1 2 5
2 3 6
Now, update the labels inplace.
>>> df.set_axis(['i', 'ii'], axis='columns', inplace=True)
>>> df
i ii
0 1 4
1 2 5
2 3 6
"""
if inplace:
setattr(self, self._get_axis_name(axis), labels)
else:
obj = self.copy()
obj.set_axis(labels, axis=axis, inplace=True)
return obj
def _set_axis(self, axis, labels):
self._data.set_axis(axis, labels)
self._clear_item_cache()
def swapaxes(self, axis1, axis2, copy=True):
"""
Interchange axes and swap values axes appropriately.
Returns
-------
y : same as input
"""
i = self._get_axis_number(axis1)
j = self._get_axis_number(axis2)
if i == j:
if copy:
return self.copy()
return self
mapping = {i: j, j: i}
new_axes = (self._get_axis(mapping.get(k, k)) for k in range(self._AXIS_LEN))
new_values = self.values.swapaxes(i, j)
if copy:
new_values = new_values.copy()
return self._constructor(new_values, *new_axes).__finalize__(self)
def droplevel(self, level, axis=0):
"""
Return DataFrame with requested index / column level(s) removed.
.. versionadded:: 0.24.0
Parameters
----------
level : int, str, or list-like
If a string is given, must be the name of a level
If list-like, elements must be names or positional indexes
of levels.
axis : {0 or 'index', 1 or 'columns'}, default 0
Returns
-------
DataFrame
DataFrame with requested index / column level(s) removed.
Examples
--------
>>> df = pd.DataFrame([
... [1, 2, 3, 4],
... [5, 6, 7, 8],
... [9, 10, 11, 12]
... ]).set_index([0, 1]).rename_axis(['a', 'b'])
>>> df.columns = pd.MultiIndex.from_tuples([
... ('c', 'e'), ('d', 'f')
... ], names=['level_1', 'level_2'])
>>> df
level_1 c d
level_2 e f
a b
1 2 3 4
5 6 7 8
9 10 11 12
>>> df.droplevel('a')
level_1 c d
level_2 e f
b
2 3 4
6 7 8
10 11 12
>>> df.droplevel('level2', axis=1)
level_1 c d
a b
1 2 3 4
5 6 7 8
9 10 11 12
"""
labels = self._get_axis(axis)
new_labels = labels.droplevel(level)
result = self.set_axis(new_labels, axis=axis, inplace=False)
return result
def pop(self, item):
"""
Return item and drop from frame. Raise KeyError if not found.
Parameters
----------
item : str
Label of column to be popped.
Returns
-------
Series
Examples
--------
>>> df = pd.DataFrame([('falcon', 'bird', 389.0),
... ('parrot', 'bird', 24.0),
... ('lion', 'mammal', 80.5),
... ('monkey', 'mammal', np.nan)],
... columns=('name', 'class', 'max_speed'))
>>> df
name class max_speed
0 falcon bird 389.0
1 parrot bird 24.0
2 lion mammal 80.5
3 monkey mammal NaN
>>> df.pop('class')
0 bird
1 bird
2 mammal
3 mammal
Name: class, dtype: object
>>> df
name max_speed
0 falcon 389.0
1 parrot 24.0
2 lion 80.5
3 monkey NaN
"""
result = self[item]
del self[item]
try:
result._reset_cacher()
except AttributeError:
pass
return result
def squeeze(self, axis=None):
"""
Squeeze 1 dimensional axis objects into scalars.
Series or DataFrames with a single element are squeezed to a scalar.
DataFrames with a single column or a single row are squeezed to a
Series. Otherwise the object is unchanged.
This method is most useful when you don't know if your
object is a Series or DataFrame, but you do know it has just a single
column. In that case you can safely call `squeeze` to ensure you have a
Series.
Parameters
----------
axis : {0 or 'index', 1 or 'columns', None}, default None
A specific axis to squeeze. By default, all length-1 axes are
squeezed.
Returns
-------
DataFrame, Series, or scalar
The projection after squeezing `axis` or all the axes.
See Also
--------
Series.iloc : Integer-location based indexing for selecting scalars.
DataFrame.iloc : Integer-location based indexing for selecting Series.
Series.to_frame : Inverse of DataFrame.squeeze for a
single-column DataFrame.
Examples
--------
>>> primes = pd.Series([2, 3, 5, 7])
Slicing might produce a Series with a single value:
>>> even_primes = primes[primes % 2 == 0]
>>> even_primes
0 2
dtype: int64
>>> even_primes.squeeze()
2
Squeezing objects with more than one value in every axis does nothing:
>>> odd_primes = primes[primes % 2 == 1]
>>> odd_primes
1 3
2 5
3 7
dtype: int64
>>> odd_primes.squeeze()
1 3
2 5
3 7
dtype: int64
Squeezing is even more effective when used with DataFrames.
>>> df = pd.DataFrame([[1, 2], [3, 4]], columns=['a', 'b'])
>>> df
a b
0 1 2
1 3 4
Slicing a single column will produce a DataFrame with the columns
having only one value:
>>> df_a = df[['a']]
>>> df_a
a
0 1
1 3
So the columns can be squeezed down, resulting in a Series:
>>> df_a.squeeze('columns')
0 1
1 3
Name: a, dtype: int64
Slicing a single row from a single column will produce a single
scalar DataFrame:
>>> df_0a = df.loc[df.index < 1, ['a']]
>>> df_0a
a
0 1
Squeezing the rows produces a single scalar Series:
>>> df_0a.squeeze('rows')
a 1
Name: 0, dtype: int64
Squeezing all axes will project directly into a scalar:
>>> df_0a.squeeze()
1
"""
axis = self._AXIS_NAMES if axis is None else (self._get_axis_number(axis),)
return self.iloc[
tuple(
0 if i in axis and len(a) == 1 else slice(None)
for i, a in enumerate(self.axes)
)
]
def swaplevel(self, i=-2, j=-1, axis=0):
"""
Swap levels i and j in a MultiIndex on a particular axis
Parameters
----------
i, j : int, str (can be mixed)
Level of index to be swapped. Can pass level name as string.
Returns
-------
swapped : same type as caller (new object)
"""
axis = self._get_axis_number(axis)
result = self.copy()
labels = result._data.axes[axis]
result._data.set_axis(axis, labels.swaplevel(i, j))
return result
# ----------------------------------------------------------------------
# Rename
def rename(self, *args, **kwargs):
"""
Alter axes input function or functions. Function / dict values must be
unique (1-to-1). Labels not contained in a dict / Series will be left
as-is. Extra labels listed don't throw an error. Alternatively, change
``Series.name`` with a scalar value (Series only).
Parameters
----------
%(axes)s : scalar, list-like, dict-like or function, optional
Scalar or list-like will alter the ``Series.name`` attribute,
and raise on DataFrame.
dict-like or functions are transformations to apply to
that axis' values
copy : bool, default True
Also copy underlying data.
inplace : bool, default False
Whether to return a new %(klass)s. If True then value of copy is
ignored.
level : int or level name, default None
In case of a MultiIndex, only rename labels in the specified
level.
errors : {'ignore', 'raise'}, default 'ignore'
If 'raise', raise a `KeyError` when a dict-like `mapper`, `index`,
or `columns` contains labels that are not present in the Index
being transformed.
If 'ignore', existing keys will be renamed and extra keys will be
ignored.
Returns
-------
renamed : %(klass)s (new object)
Raises
------
KeyError
If any of the labels is not found in the selected axis and
"errors='raise'".
See Also
--------
NDFrame.rename_axis
Examples
--------
>>> s = pd.Series([1, 2, 3])
>>> s
0 1
1 2
2 3
dtype: int64
>>> s.rename("my_name") # scalar, changes Series.name
0 1
1 2
2 3
Name: my_name, dtype: int64
>>> s.rename(lambda x: x ** 2) # function, changes labels
0 1
1 2
4 3
dtype: int64
>>> s.rename({1: 3, 2: 5}) # mapping, changes labels
0 1
3 2
5 3
dtype: int64
Since ``DataFrame`` doesn't have a ``.name`` attribute,
only mapping-type arguments are allowed.
>>> df = pd.DataFrame({"A": [1, 2, 3], "B": [4, 5, 6]})
>>> df.rename(2)
Traceback (most recent call last):
...
TypeError: 'int' object is not callable
``DataFrame.rename`` supports two calling conventions
* ``(index=index_mapper, columns=columns_mapper, ...)``
* ``(mapper, axis={'index', 'columns'}, ...)``
We *highly* recommend using keyword arguments to clarify your
intent.
>>> df.rename(index=str, columns={"A": "a", "B": "c"})
a c