Repositories list

• seaflow-web

  Public
  HTML

  •

  MIT License

  •0•0•0•0•Updated May 15, 2025May 15, 2025

• seaflow-sfl

  Public
  SFL files contain metadata for each SeaFlow files recorded during the cruise. These metadata are provided by the ship's data broadcast system and are being copied to the SeaFlow instrument as is.

  reproducible-researchseaflowcruise+ 2ship-dataseaflow-instrument

  HTML

  •

  MIT License

  •2•2•0•1•Updated May 8, 2025May 8, 2025

• cruisetrack-planner

  Public
  a user-friendly interface for planning cruise tracks

  R

  •1•0•0•0•Updated Apr 10, 2025Apr 10, 2025

• flowkernel-project

  Public
  R

  •3•0•0•0•Updated Apr 9, 2025Apr 9, 2025

• seaflow-calibration

  Public
  0•0•0•0•Updated Mar 11, 2025Mar 11, 2025

• seaflowpy

  Public
  Python package with library and CLI tool for analyzing SeaFlow data

  pythonreproducible-researchoceanography+ 2flow-cytometryseaflow

  Python

  •

  GNU General Public License v3.0

  •3•5•1•0•Updated Feb 24, 2025Feb 24, 2025

• seaflow-gating

  Public
  1•0•0•0•Updated Feb 24, 2025Feb 24, 2025

• seaflow-multifilter

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 24, 2025Feb 24, 2025

• popcycle

  Public
  Popcycle is an R package that offers reproducible analytical tools to analyze flow cytometry data collected by SeaFlow

  reproducible-researchoceanographyflow-cytometry+ 3phytoplanktonworkflowseaflow

  R

  •

  MIT License

  •8•9•8•0•Updated Jan 24, 2025Jan 24, 2025

• realtime-dbs

  Public
  SeaFlow realtime analysis parameter databases

  MIT License

  •1•0•0•0•Updated Jan 7, 2025Jan 7, 2025

• fsc-poc-calibration

  Public
  Conversion from light scattering measured by SeaFlow to carbon per cell

  reproducible-researchflow-cytometryseaflow+ 2carbon-quotaslight-scatter-measurements

  R

  •

  MIT License

  •0•1•0•0•Updated Nov 21, 2024Nov 21, 2024

• mpm-workflow

  Public
  SeaFlow matrix population model workflow

  Python

  •

  MIT License

  •0•2•0•0•Updated Jun 14, 2024Jun 14, 2024

• seaflow-filter

  Public
  reproducible-researchseaflow

  R

  •

  MIT License

  •1•0•0•0•Updated Jan 26, 2024Jan 26, 2024

• seaflow-virtualcore

  Public
  Calibration of SeaFlow's Virtual Core

  reproducible-researchflow-cytometryseaflow

  R

  •

  MIT License

  •0•1•0•0•Updated Jan 8, 2024Jan 8, 2024

• seaflog

  Public
  Command-line tool and Go library for parsing SeaFlow instrument v1 log files

  Go

  •

  MIT License

  •0•0•0•0•Updated Jan 4, 2024Jan 4, 2024

• SeaFlow_cruise_report

  Public
  knitR and supporting documents to build an R and LaTeX cruise report for SeaFlow data.

  TeX

  •1•1•0•0•Updated Oct 17, 2023Oct 17, 2023

• flowmix

  Public
  Statistical analysis of ocean flow cytometry data.

  HTML

  •2•0•0•0•Updated Aug 30, 2022Aug 30, 2022

• flowRate

  Public
  A Bayesian approach to size-structured matrix population model to estimate daily rates of phytoplankton cell division, growth and respiration

  Jupyter Notebook

  •

  MIT License

  •2•0•0•0•Updated Nov 19, 2021Nov 19, 2021

• cytosegmenter

  Public
  Code accompanying the paper "A Kernel-Based Change Detection Method to Map Shifts in Phytoplankton Communities Measured by Flow Cytometry"

  Python

  •

  MIT License

  •1•0•0•0•Updated Sep 1, 2021Sep 1, 2021

• fsc-size-calibration

  Public
  Conversion from light scattering measured by SeaFlow to cell diameter

  reproducible-researchflow-cytometryseaflow+ 2cell-diameterscattering-measurements

  R

  •

  MIT License

  •0•3•0•0•Updated Aug 5, 2020Aug 5, 2020