Skip to content

Commit bbf20bc

Browse files
Update README.md
1 parent e445ca5 commit bbf20bc

File tree

1 file changed

+6
-1
lines changed

1 file changed

+6
-1
lines changed

README.md

+6-1
Original file line numberDiff line numberDiff line change
@@ -60,8 +60,13 @@ After features coordinates are found by REFINED, they can be used to convert dat
6060
**`GDSC`**: We downloaded the IC50 responses and cell line screened data from [GDSC_download](https://www.cancerrxgene.org/downloads/bulk_download), and the drug's chemical information from [Pubchem](https://pubchem.ncbi.nlm.nih.gov/).
6161

6262
**`PaDel`**: To convert the chemical information of each drug to their descriptors, we used [PaDel](http://www.yapcwsoft.com/dd/padeldescriptor/) software.
63-
## 6. Syntethic data
63+
## 5. Syntethic data
6464
The code for generating the synthetic data and modeling with the CNN model are provided in the `Syntethic data` folder. Please note that, after generating the data using **Synthetic_Data.py** one need to generated coordinates using the REFINED algorithm, then use the **Synthetic_CNN.py** for modeling.
65+
66+
## 6. Visualization with REFINED
67+
**REFINED_Viz.ipynb** is also provided to show how REFINED can be used to represent a datapoint (sample) in a dataset as an image.
68+
69+
6570
## Cite
6671
If you use [REFINED](https://www.nature.com/articles/s41467-020-18197-y) for research, please cite the following paper:
6772

0 commit comments

Comments
 (0)