Installation error

[shakti83kumar]

Hello Friends,
I am getting below mentioned error while installation. Please help me in installation.
Thanks & regards
Shakti Kumar

shaktikumar@shaktikumar-N7-B650E:~/Softwares$ sudo cargo install --git https://github.com/nanoporetech/modkit.git
[sudo] password for shaktikumar:
Updating git repository https://github.com/nanoporetech/modkit.git
Installing mod_kit v0.4.1 (https://github.com/nanoporetech/modkit.git#cec0a0bb)
Updating crates.io index
Downloaded bitflags v2.6.0
Downloaded either v1.13.0
Downloaded destructure_traitobject v0.2.0
Downloaded fs-utils v1.1.4
Downloaded doc-comment v0.3.3
Downloaded equivalent v1.0.1
Downloaded fxhash v0.2.1
Downloaded log-mdc v0.1.0
Downloaded number_prefix v0.4.0
Downloaded nalgebra-macros v0.1.0
Downloaded icu_provider_macros v1.5.0
Downloaded block-buffer v0.10.4
Downloaded anstyle v1.0.10
Downloaded peroxide-ad v0.3.0
Downloaded newtype_derive v0.1.6
Downloaded bit-vec v0.6.3
Downloaded anstyle-query v1.1.2
Downloaded bytecount v0.6.8
Downloaded byteorder v1.5.0
Downloaded rawpointer v0.2.1
Downloaded reborrow v0.5.5
Downloaded bit-set v0.5.3
Downloaded anstream v0.6.18
Downloaded clap_lex v0.7.3
Downloaded cfg-if v1.0.0
Downloaded approx v0.5.1
Downloaded cpufeatures v0.2.16
Downloaded crossbeam-deque v0.8.5
Downloaded crypto-common v0.1.6
Downloaded enum-map-derive v0.17.0
Downloaded crossbeam-queue v0.3.11
Downloaded derive-new v0.6.0
Downloaded common_macros v0.1.1
Downloaded colorchoice v1.0.3
Downloaded core_affinity v0.8.1
Downloaded funty v2.0.0
Downloaded fnv v1.0.7
Downloaded derive-new v0.5.9
Downloaded feature-probe v0.1.1
Downloaded fixedbitset v0.4.2
Downloaded write16 v1.0.0
Downloaded dirs-next v2.0.0
Downloaded cmake v0.1.52
Downloaded lru v0.9.0
Downloaded enum-map v2.7.3
Downloaded digest v0.10.7
Downloaded nanorand v0.7.0
Downloaded lazy_static v1.5.0
Downloaded glob v0.3.1
Downloaded form_urlencoded v1.2.1
Downloaded log-once v0.4.1
Downloaded itertools-num v0.1.3
Downloaded itoa v1.0.14
Downloaded multimap v0.9.1
Downloaded linear-map v1.2.0
Downloaded generic-array v0.14.7
Downloaded futures-sink v0.3.31
Downloaded heck v0.4.1
Downloaded heck v0.5.0
Downloaded num v0.4.3
Downloaded crossbeam v0.8.4
Downloaded ansi_term v0.12.1
Downloaded futures-core v0.3.31
Downloaded autocfg v1.4.0
Downloaded pest_generator v2.7.14
Downloaded num-iter v0.1.45
Downloaded editdistancek v1.0.2
Downloaded num-integer v0.1.46
Downloaded humantime v2.1.0
Downloaded anstyle-parse v0.2.6
Downloaded libdeflater v0.12.0
Downloaded radium v0.7.0
Downloaded bio-types v1.0.4
Downloaded rustversion v1.0.18
Downloaded rand_chacha v0.3.1
Downloaded scopeguard v1.2.0
Downloaded zerofrom v0.1.5
Downloaded order-stat v0.1.3
Downloaded typemap-ors v1.0.0
Downloaded serde-value v0.7.0
Downloaded anyhow v1.0.93
Downloaded num_cpus v1.16.0
Downloaded ieee754 v0.2.6
Downloaded rand_core v0.6.4
Downloaded tap v1.0.1
Downloaded paste v1.0.15
Downloaded shlex v1.3.0
Downloaded clap_derive v4.5.18
Downloaded console v0.15.8
Downloaded quick-error v1.2.3
Downloaded ordered-float v2.10.1
Downloaded custom_derive v0.1.7
Downloaded crc32fast v1.4.2
Downloaded dirs-sys-next v0.1.2
Downloaded csv-core v0.1.11
Downloaded ordered-float v3.9.2
Downloaded rustc_version v0.1.7
Downloaded puruspe v0.2.5
Downloaded errno v0.3.10
Downloaded percent-encoding v2.3.1
Downloaded rustc-hash v1.1.0
Downloaded random_color v1.0.0
Downloaded ppv-lite86 v0.2.20
Downloaded iana-time-zone v0.1.61
Downloaded displaydoc v0.2.5
Downloaded utf8_iter v1.0.4
Downloaded utf16_iter v1.0.5
Downloaded unsafe-any-ors v1.0.0
Downloaded strum v0.25.0
Downloaded is-terminal v0.4.13
Downloaded thread-id v4.2.2
Downloaded substring v1.4.5
Downloaded ahash v0.8.11
Downloaded getrandom v0.2.15
Downloaded idna_adapter v1.2.0
Downloaded tinystr v0.7.6
Downloaded icu_locid_transform v1.5.0
Downloaded once_cell v1.20.2
Downloaded bytemuck v1.20.0
Downloaded bv v0.11.1
Downloaded prettytable-rs v0.10.0
Downloaded strsim v0.11.1
Downloaded utf8parse v0.2.2
Downloaded writeable v0.5.5
Downloaded special v0.10.3
Downloaded pkg-config v0.3.31
Downloaded version_check v0.9.5
Downloaded spin v0.9.8
Downloaded pin-project-internal v1.1.7
Downloaded strum_macros v0.26.4
Downloaded yoke-derive v0.7.5
Downloaded is_terminal_polyfill v1.70.1
Downloaded stable_deref_trait v1.2.0
Downloaded synstructure v0.13.1
Downloaded lock_api v0.4.12
Downloaded jobserver v0.1.32
Downloaded clap v4.5.21
Downloaded crossbeam-utils v0.8.20
Downloaded crossbeam-epoch v0.9.18
Downloaded derivative v2.2.0
Downloaded num-rational v0.4.2
Downloaded num-complex v0.4.6
Downloaded thiserror v1.0.69
Downloaded terminal_size v0.4.1
Downloaded wyz v0.5.1
Downloaded smallvec v1.13.2
Downloaded icu_provider v1.5.0
Downloaded icu_locid_transform_data v1.5.0
Downloaded icu_normalizer_data v1.5.0
Downloaded quote v1.0.37
Downloaded parking_lot_core v0.9.10
Downloaded sha2 v0.10.8
Downloaded arc-swap v1.7.1
Downloaded thread-tree v0.3.3
Downloaded semver v0.1.20
Downloaded vec_map v0.8.2
Downloaded bytes v1.9.0
Downloaded zerovec-derive v0.10.3
Downloaded zerofrom-derive v0.1.5
Downloaded flume v0.10.14
Downloaded log v0.4.22
Downloaded pest_derive v2.7.14
Downloaded proc-macro2 v1.0.92
Downloaded num-traits v0.2.19
Downloaded parking_lot v0.12.3
Downloaded ucd-trie v0.1.7
Downloaded simba v0.6.0
Downloaded pest_meta v2.7.14
Downloaded term v0.7.0
Downloaded icu_properties v1.5.1
Downloaded icu_normalizer v1.5.0
Downloaded rust-lapper v1.1.0
Downloaded zerocopy-derive v0.7.35
Downloaded ryu v1.0.18
Downloaded thiserror-impl v1.0.69
Downloaded yoke v0.7.5
Downloaded unicode-ident v1.0.14
Downloaded encode_unicode v1.0.0
Downloaded log4rs v1.3.0
Downloaded matrixmultiply v0.3.9
Downloaded pin-project v1.1.7
Downloaded icu_locid v1.5.0
Downloaded icu_collections v1.5.0
Downloaded rand_distr v0.4.3
Downloaded litemap v0.7.4
Downloaded rayon-core v1.12.1
Downloaded strum_macros v0.25.3
Downloaded typenum v1.17.0
Downloaded triple_accel v0.4.0
Downloaded cc v1.2.2
Downloaded crossbeam-channel v0.5.13
Downloaded handlebars v4.5.0
Downloaded unsafe-libyaml v0.2.11
Downloaded openssl-sys v0.9.104
Downloaded indicatif v0.17.9
Downloaded serde_derive v1.0.215
Downloaded flate2 v1.0.35
Downloaded serde v1.0.215
Downloaded hashbrown v0.13.2
Downloaded serde_yaml v0.9.34+deprecated
Downloaded indexmap v2.7.0
Downloaded minimal-lexical v0.2.1
Downloaded wide v0.7.30
Downloaded safe_arch v0.7.2
Downloaded rand v0.8.5
Downloaded itertools v0.12.1
Downloaded url v2.5.4
Downloaded hashbrown v0.15.2
Downloaded num-bigint v0.4.6
Downloaded memchr v2.7.4
Downloaded idna v1.0.3
Downloaded zerovec v0.10.4
Downloaded itertools v0.11.0
Downloaded clap_builder v4.5.21
Downloaded libm v0.2.11
Downloaded nom v7.1.3
Downloaded rust-htslib v0.46.0
Downloaded statrs v0.16.1
Downloaded aho-corasick v1.1.3
Downloaded pest v2.7.14
Downloaded pulp v0.18.22
Downloaded bio v1.6.0
Downloaded bitvec v1.0.1
Downloaded chrono v0.4.38
Downloaded portable-atomic v1.10.0
Downloaded serde_json v1.0.133
Downloaded libdeflate-sys v0.12.0
Downloaded zerocopy v0.7.35
Downloaded syn v1.0.109
Downloaded peroxide v0.32.1
Downloaded rayon v1.10.0
Downloaded icu_properties_data v1.5.0
Downloaded rv v0.16.0
Downloaded unicode-width v0.2.0
Downloaded unicode-width v0.1.14
Downloaded ndarray v0.15.6
Downloaded charming v0.3.1
Downloaded vcpkg v0.2.15
Downloaded regex v1.11.1
Downloaded syn v2.0.90
Downloaded nalgebra v0.29.0
Downloaded rustix v0.38.41
Downloaded regex-syntax v0.8.5
Downloaded bzip2-sys v0.1.11+1.0.8
Downloaded csv v1.3.1
Downloaded regex-automata v0.4.9
Downloaded lzma-sys v0.1.20
Downloaded petgraph v0.6.5
Downloaded libc v0.2.167
Downloaded libz-sys v1.1.20
Downloaded curl-sys v0.4.78+curl-8.11.0
Downloaded gzp v0.11.3
Downloaded linux-raw-sys v0.4.14
Downloaded hts-sys v2.2.0
Downloaded openssl-src v300.4.1+3.4.0
Downloaded 255 crates (39.0 MB) in 1m 06s (largest was openssl-src at 9.9 MB)
Compiling proc-macro2 v1.0.92
Compiling unicode-ident v1.0.14
Compiling libc v0.2.167
Compiling autocfg v1.4.0
Compiling shlex v1.3.0
Compiling libm v0.2.11
Compiling cfg-if v1.0.0
Compiling pkg-config v0.3.31
Compiling byteorder v1.5.0
Compiling crossbeam-utils v0.8.20
Compiling serde v1.0.215
Compiling thiserror v1.0.69
Compiling memchr v2.7.4
Compiling syn v1.0.109
Compiling stable_deref_trait v1.2.0
Compiling vcpkg v0.2.15
Compiling once_cell v1.20.2
Compiling bytemuck v1.20.0
Compiling writeable v0.5.5
Compiling litemap v0.7.4
Compiling itoa v1.0.14
Compiling ryu v1.0.18
Compiling smallvec v1.13.2
Compiling icu_locid_transform_data v1.5.0
Compiling lazy_static v1.5.0
Compiling rawpointer v0.2.1
Compiling rustversion v1.0.18
Compiling heck v0.5.0
Compiling semver v0.1.20
Compiling version_check v0.9.5
Compiling ucd-trie v0.1.7
Compiling scopeguard v1.2.0
Compiling paste v1.0.15
Compiling icu_properties_data v1.5.0
Compiling either v1.13.0
Compiling serde_json v1.0.133
Compiling regex-syntax v0.8.5
Compiling equivalent v1.0.1
Compiling safe_arch v0.7.2
Compiling utf8_iter v1.0.4
Compiling utf16_iter v1.0.5
Compiling hashbrown v0.15.2
Compiling icu_normalizer_data v1.5.0
Compiling typenum v1.17.0
Compiling quick-error v1.2.3
Compiling write16 v1.0.0
Compiling rustc_version v0.1.7
Compiling rustix v0.38.41
Compiling fs-utils v1.1.4
Compiling rayon-core v1.12.1
Compiling parking_lot_core v0.9.10
Compiling feature-probe v0.1.1
Compiling utf8parse v0.2.2
Compiling glob v0.3.1
Compiling anyhow v1.0.93
Compiling linux-raw-sys v0.4.14
Compiling num-traits v0.2.19
Compiling matrixmultiply v0.3.9
Compiling lock_api v0.4.12
Compiling ahash v0.8.11
Compiling bitflags v2.6.0
Compiling bv v0.11.1
Compiling anstyle-parse v0.2.6
Compiling doc-comment v0.3.3
Compiling newtype_derive v0.1.6
Compiling wide v0.7.30
Compiling aho-corasick v1.1.3
Compiling csv-core v0.1.11
Compiling anstyle v1.0.10
Compiling radium v0.7.0
Compiling anstyle-query v1.1.2
Compiling portable-atomic v1.10.0
Compiling colorchoice v1.0.3
Compiling is_terminal_polyfill v1.70.1
Compiling unicode-width v0.1.14
Compiling destructure_traitobject v0.2.0
Compiling peroxide v0.32.1
Compiling percent-encoding v2.3.1
Compiling unsafe-any-ors v1.0.0
Compiling anstream v0.6.18
Compiling substring v1.4.5
Compiling crc32fast v1.4.2
Compiling futures-sink v0.3.31
Compiling fixedbitset v0.4.2
Compiling quote v1.0.37
Compiling form_urlencoded v1.2.1
Compiling bit-vec v0.6.3
Compiling crossbeam-channel v0.5.13
Compiling crossbeam-epoch v0.9.18
Compiling indexmap v2.7.0
Compiling spin v0.9.8
Compiling tap v1.0.1
Compiling custom_derive v0.1.7
Compiling syn v2.0.90
Compiling strsim v0.11.1
Compiling heck v0.4.1
Compiling order-stat v0.1.3
Compiling puruspe v0.2.5
Compiling clap_lex v0.7.3
Compiling unsafe-libyaml v0.2.11
Compiling iana-time-zone v0.1.61
Compiling futures-core v0.3.31
Compiling bit-set v0.5.3
Compiling jobserver v0.1.32
Compiling getrandom v0.2.15
Compiling num_cpus v1.16.0
Compiling crossbeam-deque v0.8.5
Compiling dirs-sys-next v0.1.2
Compiling console v0.15.8
Compiling is-terminal v0.4.13
Compiling thread-id v4.2.2
Compiling wyz v0.5.1
Compiling dirs-next v2.0.0
Compiling cc v1.2.2
Compiling rand_core v0.6.4
Compiling thread-tree v0.3.3
Compiling nanorand v0.7.0
Compiling parking_lot v0.12.3
Compiling term v0.7.0
Compiling core_affinity v0.8.1
Compiling crossbeam-queue v0.3.11
Compiling typemap-ors v1.0.0
Compiling terminal_size v0.4.1
Compiling special v0.10.3
Compiling itertools v0.11.0
Compiling clap_builder v4.5.21
Compiling fxhash v0.2.1
Compiling fnv v1.0.7
Compiling arc-swap v1.7.1
Compiling num-integer v0.1.46
Compiling num-complex v0.4.6
Compiling approx v0.5.1
Compiling ordered-float v2.10.1
Compiling petgraph v0.6.5
Compiling chrono v0.4.38
Compiling itertools-num v0.1.3
Compiling ordered-float v3.9.2
Compiling strum v0.25.0
Compiling log-mdc v0.1.0
Compiling minimal-lexical v0.2.1
Compiling encode_unicode v1.0.0
Compiling humantime v2.1.0
Compiling number_prefix v0.4.0
Compiling rayon v1.10.0
Compiling num-bigint v0.4.6
Compiling num-iter v0.1.45
Compiling linear-map v1.2.0
Compiling bytecount v0.6.8
Compiling funty v2.0.0
Compiling reborrow v0.5.5
Compiling unicode-width v0.2.0
Compiling bytes v1.9.0
Compiling ieee754 v0.2.6
Compiling editdistancek v1.0.2
Compiling cmake v0.1.52
Compiling openssl-src v300.4.1+3.4.0
Compiling triple_accel v0.4.0
Compiling pulp v0.18.22
Compiling regex-automata v0.4.9
Compiling nom v7.1.3
Compiling rust-lapper v1.1.0
Compiling simba v0.6.0
Compiling crossbeam v0.8.4
Compiling itertools v0.12.1
Compiling common_macros v0.1.1
Compiling rustc-hash v1.1.0
Compiling ansi_term v0.12.1
Compiling bitvec v1.0.1
Compiling ndarray v0.15.6
Compiling libz-sys v1.1.20
Compiling openssl-sys v0.9.104
Compiling lzma-sys v0.1.20
Compiling bzip2-sys v0.1.11+1.0.8
Compiling curl-sys v0.4.78+curl-8.11.0
Compiling libdeflate-sys v0.12.0
Compiling hts-sys v2.2.0
Compiling num-rational v0.4.2
Compiling num v0.4.3
Compiling indicatif v0.17.9
Compiling regex v1.11.1
Compiling synstructure v0.13.1
Compiling nalgebra-macros v0.1.0
Compiling peroxide-ad v0.3.0
Compiling derivative v2.2.0
Compiling derive-new v0.5.9
Compiling serde_derive v1.0.215
Compiling zerocopy-derive v0.7.35
Compiling zerofrom-derive v0.1.5
Compiling thiserror-impl v1.0.69
Compiling yoke-derive v0.7.5
Compiling zerovec-derive v0.10.3
Compiling displaydoc v0.2.5
Compiling icu_provider_macros v1.5.0
Compiling pin-project-internal v1.1.7
Compiling derive-new v0.6.0
Compiling strum_macros v0.26.4
Compiling enum-map-derive v0.17.0
Compiling strum_macros v0.25.3
Compiling flate2 v1.0.35
Compiling clap_derive v4.5.18
Compiling libdeflater v0.12.0
Compiling enum-map v2.7.3
Compiling zerocopy v0.7.35
Compiling pin-project v1.1.7
Compiling flume v0.10.14
Compiling pest v2.7.14
Compiling zerofrom v0.1.5
Compiling ppv-lite86 v0.2.20
Compiling yoke v0.7.5
Compiling bio-types v1.0.4
Compiling gzp v0.11.3
Compiling hashbrown v0.13.2
Compiling zerovec v0.10.4
Compiling clap v4.5.21
Compiling rand_chacha v0.3.1
Compiling rand v0.8.5
Compiling lru v0.9.0
Compiling pest_meta v2.7.14
Compiling tinystr v0.7.6
Compiling icu_collections v1.5.0
Compiling rand_distr v0.4.3
Compiling random_color v1.0.0
Compiling icu_locid v1.5.0
Compiling nalgebra v0.29.0
Compiling pest_generator v2.7.14
Compiling icu_provider v1.5.0
Compiling icu_locid_transform v1.5.0
Compiling pest_derive v2.7.14
Compiling icu_properties v1.5.1
Compiling rv v0.16.0
Compiling log v0.4.22
Compiling csv v1.3.1
Compiling vec_map v0.8.2
Compiling multimap v0.9.1
Compiling serde_yaml v0.9.34+deprecated
Compiling serde-value v0.7.0
Compiling log-once v0.4.1
Compiling prettytable-rs v0.10.0
Compiling icu_normalizer v1.5.0
Compiling handlebars v4.5.0
Compiling idna_adapter v1.2.0
Compiling idna v1.0.3
Compiling log4rs v1.3.0
Compiling url v2.5.4
Compiling charming v0.3.1
Compiling statrs v0.16.1
Compiling bio v1.6.0
Compiling rust-htslib v0.46.0
Compiling mod_kit v0.4.1 (/root/.cargo/git/checkouts/modkit-29a79722a38395c9/cec0a0b)
error[E0658]: use of unstable library feature 'file_create_new'
--> src/writers.rs:585:13
|
585 | File::create_new(fp).context("refusing to overwrite {fp:?}")?
| ^^^^^^^^^^^^^^^^
|
= note: see issue #105135 rust-lang/rust#105135 for more information

error[E0658]: use of unstable library feature 'file_create_new'
--> src/localise/subcommand.rs:230:45
|
230 | Box::new(BufWriter::new(File::create_new(out_fp)?))
| ^^^^^^^^^^^^^^^^
|
= note: see issue #105135 rust-lang/rust#105135 for more information

error[E0658]: use of unstable library feature 'file_create_new'
--> src/localise/subcommand.rs:287:17
|
287 | File::create_new(p)?
| ^^^^^^^^^^^^^^^^
|
= note: see issue #105135 rust-lang/rust#105135 for more information

error[E0658]: use of unstable library feature 'file_create_new'
--> src/stats/subcommand.rs:67:13
|
67 | File::create_new(&self.out_table)?
| ^^^^^^^^^^^^^^^^
|
= note: see issue #105135 rust-lang/rust#105135 for more information

For more information about this error, try rustc --explain E0658.
error: could not compile mod_kit (lib) due to 4 previous errors
warning: build failed, waiting for other jobs to finish...
error: failed to compile mod_kit v0.4.1 (https://github.com/nanoporetech/modkit.git#cec0a0bb), intermediate artifacts can be found at /tmp/cargo-installdLeZyG.
To reuse those artifacts with a future compilation, set the environment variable CARGO_TARGET_DIR to that path.

[ArtRand]

Hello @shakti83kumar,

Could you tell me what $ cargo --version and $ rustc --version show you? Also how did you install rust? The File::create_new function requires rust >= 1.77.0, but I would expect that cargo should pick that up from the rust-toolchain.toml.

[shakti83kumar]

Hi @ArtRand,
I have rectified the mod-kit installation problem and successfully installed.
first of all, I have uninstall the rustc from synaptic package manager and follow the
rustc the instruction from page https://www.rust-lang.org/tools/install.
Next I follow the https://nanoporetech.github.io/modkit/quick_start.html for successful installation especially by this "cargo install --git https://github.com/nanoporetech/modkit.git"
Thanks for your support

[ArtRand]

@shakti83kumar Great, I'm glad you got it sorted out.