From 7a6ab8d45f6315053d7e2ff856dbee2e0440142b Mon Sep 17 00:00:00 2001 From: Art Rand Date: Thu, 27 Jul 2023 15:04:30 -0700 Subject: [PATCH] Updates changelog. --- CHANGELOG.md | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index b9e8e41..ac897b4 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,6 +4,13 @@ All notable changes to this project will be documented in this file. The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). +## [v0.1.12] +## Fixes +- [extract] no longer requires an index to use `--num-reads`, it will just take the first `--num-reads` reads if no index is found. +## Adds +- New command `modkit repair` allows projecting base modifiction calls from one modBAM onto another where the reads have beem trimmed or clipped. +- `adjust-mods`, `update-tags`, `sample-probs`, `summary`, `call-mods` and `extract` can now be used with standard input/output streams. + ## [v0.1.11] ### Fixes - [extract] Correctly handles duplex modBAMs when using `--include-bed`