Merge pull request #20 from moka-guys/hotfix/fix_parser

Fix parser to split comma separated args (#20)

Author: rebeccahaines1

README.md

@@ -74,7 +74,7 @@ options:
   -T TSO_PANELS, --tso_panels TSO_PANELS
                         Comma separated string of tso panels
   -D DEV_PANNOS, --dev_pannos DEV_PANNOS
-                        Development pan numbers
+                        Comma separated development pan numbers
   -L LOGDIR, --logdir LOGDIR
                         Directory to save the output logfile to
   -NSH NO_STREAM_HANDLER, --no_stream_handler NO_STRAM_HANDLER

samplesheet_validator/__main__.py

@@ -30,28 +30,28 @@ def get_arguments():
     parser.add_argument(
         "-SI",
         "--sequencer_ids",
-        type=str,
+        type=lambda s: [i for i in s.split(',')],
         required=True,
         help="Comma separated string of allowed sequencer IDS",
     )
     parser.add_argument(
         "-P",
         "--panels",
-        type=str,
+        type=lambda s: [i for i in s.split(',')],
         required=True,
         help="Comma separated string of allowed panel numbers",
     )
     parser.add_argument(
         "-T",
         "--tso_panels",
-        type=str,
+        type=lambda s: [i for i in s.split(',')],
         required=True,
         help="Comma separated string of tso panels",
     )
     parser.add_argument(
         "-D",
         "--dev_pannos",
-        type=str,
+        type=lambda s: [i for i in s.split(',')],
         required=True,
         help="Comma separated string of development pan numbers",
     )