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Not found in PubMed, although DOI (Thoughts on how to think (and talk) about RNA structure) was detected in the pdf! #13

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mmagnus opened this issue Feb 23, 2023 · 2 comments

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@mmagnus
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mmagnus commented Feb 23, 2023

$ pubmex.py Thoughts\ on\ how\ to\ think\ \(and\ talk\)\ about\ RNA\ structure.pdf -d
filename: .......... Thoughts on how to think (and talk) about RNA structure.pdf
filename: .......... Thoughts on how to think (and talk) about RNA structure.pdf
doi: ............... Thoughts on how to think (and talk) about RNA structure
IdList.............. ['35838578', '35439059', '33961772', '23912807']
pmid: .............. False
ERROR: 		Not found in PubMed, although DOI (Thoughts on how to think (and talk) about RNA structure) was detected in the pdf!
generate ./temp.....[OK]
out:
err: /bin/sh: -c: line 0: syntax error near unexpected token `('
/bin/sh: -c: line 0: `pdftotext Thoughts on how to think (and talk) about RNA structure.pdf temp'

ERROR: pdftotext Thoughts on how to think (and talk) about RNA structure.pdf temp
DOI has *not* been found automatically!
ERROR: 		Problem! The pubmex could not find automatically a title for the pdf file! Sorry!

This one is correct: 35439059

@mmagnus
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mmagnus commented Feb 23, 2023

(base) ➜  pubmex-errro pdf2doi 1.pdf
DOI             10.1073/pnas.2112677119                  1.pdf

@mmagnus
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mmagnus commented Feb 23, 2023

e600666

@mmagnus mmagnus closed this as completed Feb 23, 2023
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