Merge pull request #12 from lexibank/release-prep

release prep

Author: FredericBlum

.zenodo.json

@@ -13,7 +13,7 @@
     "contributors": [
         {
             "name": "Johann-Mattis List",
-            "type": "Other"
+            "type": "Editor"
         },
         {
             "name": "Mei-Shin Wu",

CONTRIBUTORS.md

@@ -2,7 +2,7 @@
 
 Name               | GitHub user | Descriptin |Role
 ---                | ---         | --- | ---
-Johann-Mattis List | @LinguList  | maintainer | Other 
+Johann-Mattis List | @LinguList  | maintainer | Editor
 Mei-Shin Wu        | @MacyL      | maintainer | Other
 Patience Epps      |   | help with concept mapping | Other
 Andy Castro | | help with concept mapping and original data | DataCurator, DataCollector, Author

README.md

@@ -33,8 +33,8 @@ This dataset was taken from the original data published by Andy Castro, who was
 ![BIPA: 100%](https://img.shields.io/badge/BIPA-100%25-brightgreen.svg "BIPA: 100%")
 ![CLTS SoundClass: 100%](https://img.shields.io/badge/CLTS%20SoundClass-100%25-brightgreen.svg "CLTS SoundClass: 100%")
 
-- **Varieties:** 16
-- **Concepts:** 592
+- **Varieties:** 16 (linked to 3 different Glottocodes)
+- **Concepts:** 592 (linked to 518 different Concepticon concept sets)
 - **Lexemes:** 9,459
 - **Sources:** 1
 - **Synonymy:** 1.01
@@ -47,7 +47,7 @@ This dataset was taken from the original data published by Andy Castro, who was
 
 Name               | GitHub user | Descriptin |Role
 ---                | ---         | --- | ---
-Johann-Mattis List | @LinguList  | maintainer | Other 
+Johann-Mattis List | @LinguList  | maintainer | Editor
 Mei-Shin Wu        | @MacyL      | maintainer | Other
 Patience Epps      |   | help with concept mapping | Other
 Andy Castro | | help with concept mapping and original data | DataCurator, DataCollector, Author

cldf/README.md

@@ -13,8 +13,8 @@ property | value
 [dc:format](http://purl.org/dc/terms/format) | <ol><li>http://concepticon.clld.org/contributions/Castro-2015-608</li></ol>
 [dc:license](http://purl.org/dc/terms/license) | https://creativecommons.org/licenses/by/4.0/
 [dcat:accessURL](http://www.w3.org/ns/dcat#accessURL) | https://github.com/lexibank/castrosui
-[prov:wasDerivedFrom](http://www.w3.org/ns/prov#wasDerivedFrom) | <ol><li><a href="https://github.com/lexibank/castrosui/tree/0ece301">lexibank/castrosui v3.0.1-4-g0ece301</a></li><li><a href="https://github.com/glottolog/glottolog/tree/v5.0">Glottolog v5.0</a></li><li><a href="https://github.com/concepticon/concepticon-data/tree/v3.2.0">Concepticon v3.2.0</a></li><li><a href="https://github.com/cldf-clts/clts//tree/v2.3.0">CLTS v2.3.0</a></li></ol>
-[prov:wasGeneratedBy](http://www.w3.org/ns/prov#wasGeneratedBy) | <ol><li><strong>lingpy-rcParams</strong>: <a href="./lingpy-rcParams.json">lingpy-rcParams.json</a></li><li><strong>python</strong>: 3.12.3</li><li><strong>python-packages</strong>: <a href="./requirements.txt">requirements.txt</a></li></ol>
+[prov:wasDerivedFrom](http://www.w3.org/ns/prov#wasDerivedFrom) | <ol><li><a href="https://github.com/lexibank/castrosui/tree/e3539dd">lexibank/castrosui v3.0.1-8-ge3539dd</a></li><li><a href="https://github.com/glottolog/glottolog/tree/v5.0">Glottolog v5.0</a></li><li><a href="https://github.com/concepticon/concepticon-data/tree/v3.2.0">Concepticon v3.2.0</a></li><li><a href="https://github.com/cldf-clts/clts/tree/v2.3.0">CLTS v2.3.0</a></li></ol>
+[prov:wasGeneratedBy](http://www.w3.org/ns/prov#wasGeneratedBy) | <ol><li><strong>lingpy-rcParams</strong>: <a href="./lingpy-rcParams.json">lingpy-rcParams.json</a></li><li><strong>python</strong>: 3.12.4</li><li><strong>python-packages</strong>: <a href="./requirements.txt">requirements.txt</a></li></ol>
 [rdf:ID](http://www.w3.org/1999/02/22-rdf-syntax-ns#ID) | castrosui
 [rdf:type](http://www.w3.org/1999/02/22-rdf-syntax-ns#type) | http://www.w3.org/ns/dcat#Distribution
 

cldf/cldf-metadata.json

@@ -16,7 +16,7 @@
         {
             "rdf:about": "https://github.com/lexibank/castrosui",
             "rdf:type": "prov:Entity",
-            "dc:created": "v3.0.1-4-g0ece301",
+            "dc:created": "v3.0.1-8-ge3539dd",
             "dc:title": "Repository"
         },
         {
@@ -32,7 +32,7 @@
             "dc:title": "Concepticon"
         },
         {
-            "rdf:about": "https://github.com/cldf-clts/clts/",
+            "rdf:about": "https://github.com/cldf-clts/clts",
             "rdf:type": "prov:Entity",
             "dc:created": "v2.3.0",
             "dc:title": "CLTS"
@@ -45,7 +45,7 @@
         },
         {
             "dc:title": "python",
-            "dc:description": "3.12.3"
+            "dc:description": "3.12.4"
         },
         {
             "dc:title": "python-packages",

cldf/lingpy-rcParams.json

@@ -64,7 +64,7 @@
         10,
         10
     ],
-    "filename": "lingpy-2024-07-15",
+    "filename": "lingpy-2024-07-16",
     "gap_symbol": "-",
     "gap_weight": 0.5,
     "gop": -2,
@@ -123,7 +123,7 @@
     "scorer": {},
     "sonar": true,
     "stress": "\u02c8\u02cc'",
-    "timestamp": "2024-07-15 22:50",
+    "timestamp": "2024-07-16 07:10",
     "tones": "\u00b9\u00b2\u00b3\u2074\u2075\u2076\u2077\u2078\u2079\u2070\u2081\u2082\u2083\u2084\u2085\u2086\u2087\u2088\u2089\u20800123456789\u02e5\u02e6\u02e7\u02e8\u02e9\u02ea\u02eb-\ua708-\ua709-\ua70a-\ua70b-\ua70c-\ua70d-\ua70e-\ua70f-\ua710-\ua711-\ua712-\ua713-\ua714-\ua715-\ua716-\ua717-\ua718-\ua719-\ua71a-\ua700-\ua701-\ua702-\ua703-\ua704-\ua705-\ua706-\ua707",
     "tree_calc": "neighbor",
     "unique_sequences": true,

cldf/requirements.txt

@@ -1,82 +1,56 @@
 appdirs==1.4.4
-arrow==1.3.0
 attrs==23.2.0
-Babel==2.14.0
+Babel==2.15.0
 bibtexparser==2.0.0b7
 bs4==0.0.2
-certifi==2024.2.2
-cffi==1.16.0
-chardet==5.2.0
+certifi==2024.7.4
 cldfbench==1.14.0
 cldfcatalog==1.5.1
-cldfviz==1.1.0
 cldfzenodo==2.1.1
 clldutils==3.22.2
 colorama==0.4.6
 colorlog==6.8.2
-commonnexus==1.9.2
 csvw==3.3.0
-cycler==0.12.1
 gitdb==4.0.11
 greenlet==3.0.3
 idna==3.7
-igraph==0.11.5
 iniconfig==2.0.0
 isodate==0.6.1
-Jinja2==3.1.4
-jmespath==1.0.1
-joblib==1.4.2
-jsonschema==4.21.1
-kiwisolver==1.4.5
+jsonschema==4.23.0
 lingpy==2.6.13
-lxml==5.2.1
+lxml==5.2.2
 Markdown==3.6
-MarkupSafe==2.1.5
-matplotlib==3.9.0
-multipledispatch==1.0.0
 nameparser==1.1.3
-networkx==2.8.8
+networkx==3.3
 newick==1.9.0
-numpy==1.26.4
-openpyxl==3.1.2
-packaging==24.0
-pandas==2.2.2
+numpy==2.0.0
+openpyxl==3.1.5
+packaging==24.1
 pluggy==1.5.0
-psutil==6.0.0
 pybtex==0.24.0
-pycldf==1.38.0
+pycldf==1.38.1
 pyclts==3.2.0
 pyconcepticon==3.1.0
-pycountry==23.12.11
+pycountry==24.6.1
 pyglottolog==3.13.0
 pylatexenc==2.10
-pylexibank==3.4.0
-pyparsing==3.1.2
-pytest==8.2.0
+pylexibank==3.5.0
+pytest==8.2.2
 python-dateutil==2.9.0.post0
-python-frontmatter==1.1.0
-python-igraph==0.11.5
-pytz==2024.1
 rdflib==7.0.0
-referencing==0.35.0
-regex==2024.4.28
-reportlab==4.2.2
-requests==2.31.0
+referencing==0.35.1
+regex==2024.5.15
+requests==2.32.3
 rfc3986==1.5.0
-scipy==1.12.0
 segments==2.2.1
 six==1.16.0
 smmap==5.0.1
 soupsieve==2.5
 SQLAlchemy==1.4.52
 tabulate==0.9.0
 termcolor==2.4.0
-texttable==1.7.0
-threadpoolctl==3.5.0
-toyplot==1.0.3
-toytree==2.0.5
-tqdm==4.66.2
+tqdm==4.66.4
 uritemplate==4.1.1
-urllib3==1.26.18
+urllib3==2.2.2
 xlrd==2.0.1
 zenodoclient==0.5.1

lexibank_castrosui.py

@@ -30,7 +30,7 @@ class Dataset(pylexibank.Dataset):
     dir = Path(__file__).parent
     concept_class = CustomConcept
     language_class = CustomLanguage
-
+    writer_options = dict(keep_languages=False, keep_parameters=False)
     form_spec = pylexibank.FormSpec(separators=",")
 
     def cmd_makecldf(self, args):