Cases

This directory contains simulations cases using hemocell. Each directory represents a separate case study. Compared to the simulations given under examples/ the ones found here (in cases/) are considered more experiment, potentially highlighting unvalidated and/or unfinished parts of the HemoCell library. Users should proceed with care when using, or extending, examples from the cases/ directory and ensure they perform the necessary validation and verification of their numerical simulations.

Compilation

Some cases are compiled by default when compiling hemocell. To compile a single, specific case, the directory name can be passed as a compile target to CMake. To compile this case, run the following code from hemocell/build/ and replace "$case" by the desired case's directory name.

cmake --build . --parallel $(nproc) --target "$case"

Adding cases

Adding cases is similar to adding examples (see ../examples/README.md). To add a simulation case $new_case:

• Copy the template directory: cp -r ../examples/template ./$new_case.
• Add the case directory to cases/CMakeLists.txt by appending a line containing add_subdirectory("$new_case").
• Include your code in $new_case/$new_case.cpp.
• Build hemocell as usual or provide --target "$new_case$" to only compile the newly added simulation case.