DESCRIPTION

Package: concordexR
Title: Calculate the concordex coefficient
Version: 0.99.0
Authors@R: c(
    person("Kayla","Jackson", , "kaylajac@caltech.edu", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-6483-0108")),
    person("Lambda", "Moses", , "dlu2@caltech.edu", role = "aut",
           comment = c(ORCID = "0000-0002-7092-9427")),
    person("Laura", "Luebbert", , "lauraluebbert@caltech.edu", role = "ctb",
           comment = c(ORCID = "0000-0003-1379-2927")),
    person("Lior", "Pachter", , "lpachter@caltech.edu", role = c("aut", "rev", "ths"),
           comment = c(ORCID = "0000-0002-9164-6231"))
  )
Description: Many analysis workflows include approximation of a nearest
    neighbors graph followed by clustering of the graph structure. The
    concordex coefficient estimates the similarity between the graph and
    clustering results. The package 'concordexR' is an R implementation of the
    original concordex Python-based command line tool.
License: Artistic-2.0
URL: https://github.com/kayla-jackson/concordexR
BugReports: https://github.com/kayla-jackson/concordexR/issues
Imports: 
    BiocParallel,
    cli,
    DelayedArray,
    ggplot2,
    Matrix,
    methods,
    pheatmap,
    rlang,
    scales
Suggests: 
    BiocNeighbors,
    BiocStyle,
    bluster,
    covr,
    knitr,
    patchwork,
    rmarkdown,
    scater,
    TENxPBMCData,
    testthat (>= 3.0.0),
    vdiffr
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends: 
    R (>= 4.2)
Config/testthat/edition: 3
biocViews:
    SingleCell,
    Clustering,
    GraphAndNetwork
VignetteBuilder: knitr