Merge pull request NOAA-EMC#142 from jiandewang/feature/update-to-main-20241127

update to main repo. 20250113 commit (20241127-PR)

Author: jiandewang

.codecov.yml

@@ -8,3 +8,6 @@ coverage:
             default:
                 threshold: 100%
                 base: parent
+
+fixes:
+  - "MOM6/::"

.github/actions/ubuntu-setup/action.yml

@@ -23,7 +23,7 @@ runs:
       run: |
         echo "::group::config.mk"
         cd .testing
-        echo "FCFLAGS_DEBUG = -g -O0 -Wextra -Wno-compare-reals -fbacktrace -ffpe-trap=invalid,zero,overflow -fcheck=bounds" >> config.mk
+        echo "FCFLAGS_DEBUG = -g -O0 -std=f2018 -Wextra -Wno-compare-reals -fbacktrace -ffpe-trap=invalid,zero,overflow -fcheck=bounds" >> config.mk
         echo "FCFLAGS_REPRO = -g -O2 -fbacktrace" >> config.mk
         echo "FCFLAGS_INIT = -finit-real=snan -finit-integer=2147483647 -finit-derived" >> config.mk
         echo "FCFLAGS_FMS = -g -fbacktrace -O0" >> config.mk

.github/workflows/coupled-api.yml

@@ -11,7 +11,7 @@ jobs:
         working-directory: .testing
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
         submodules: recursive
 

.github/workflows/coverage.yml

@@ -11,25 +11,19 @@ jobs:
         working-directory: .testing
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
         submodules: recursive
 
     - uses: ./.github/actions/ubuntu-setup
 
     - uses: ./.github/actions/testing-setup
 
-    - name: Compile file parser unit tests
-      run: make -j build/unit/test_MOM_file_parser
-
-    - name: Run file parser unit tests
-      run: make run.cov.unit
-
-    - name: Compile unit testing
+    - name: Compile unit tests
       run: make -j build.unit
 
-    - name: Run (single processor) unit tests
-      run: make run.unit
+    - name: Run unit tests
+      run: make run.cov.unit
 
     - name: Report unit test coverage to CI
       run: make report.cov.unit
@@ -40,7 +34,7 @@ jobs:
       run: make -j build/cov/MOM6
 
     - name: Run coverage tests
-      run: make -j -k run.cov
+      run: make -k run.cov
 
     - name: Report coverage to CI
       run: make report.cov

.github/workflows/documentation-and-style.yml

@@ -8,7 +8,7 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
         submodules: recursive
 

.github/workflows/expression.yml

@@ -11,7 +11,7 @@ jobs:
         working-directory: .testing
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
         submodules: recursive
 

.github/workflows/macos-regression.yml

@@ -17,7 +17,7 @@ jobs:
         working-directory: .testing
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
         submodules: recursive
 

.github/workflows/macos-stencil.yml

@@ -17,7 +17,7 @@ jobs:
         working-directory: .testing
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
         submodules: recursive
 

.github/workflows/other.yml

@@ -11,7 +11,7 @@ jobs:
         working-directory: .testing
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
         submodules: recursive
 

.github/workflows/perfmon.yml

@@ -11,7 +11,7 @@ jobs:
         working-directory: .testing
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
         submodules: recursive
 

.github/workflows/regression.yml

@@ -11,7 +11,7 @@ jobs:
         working-directory: .testing
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
         submodules: recursive
 

.github/workflows/stencil.yml

@@ -11,7 +11,7 @@ jobs:
         working-directory: .testing
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
         submodules: recursive