Merge remote-tracking branch 'GFDL/dev-gfdl-main-candidate-2023-11-13' into test/GFDL-20231113-final

Author: jiandewang

.github/workflows/coverage.yml

@@ -19,19 +19,29 @@ jobs:
 
     - uses: ./.github/actions/testing-setup
 
-    - name: Compile unit testing
-      run: make -j build/unit/MOM_unit_tests
+    - name: Compile file parser unit tests
+      run: make -j build/unit/test_MOM_file_parser
 
-    - name: Run unit tests
+    - name: Run file parser unit tests
       run: make run.cov.unit
 
+    - name: Compile unit testing
+      run: make -j build.unit
+
+    - name: Run (single processor) unit tests
+      run: make run.unit
+
     - name: Report unit test coverage to CI (PR)
       if: github.event_name == 'pull_request'
       run: make report.cov.unit REQUIRE_COVERAGE_UPLOAD=true
+      env:
+        CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
 
     - name: Report unit test coverage to CI (Push)
       if: github.event_name != 'pull_request'
       run: make report.cov.unit
+      env:
+        CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
 
     - name: Compile ocean-only MOM6 with code coverage
       run: make -j build/cov/MOM6
@@ -42,7 +52,11 @@ jobs:
     - name: Report coverage to CI (PR)
       if: github.event_name == 'pull_request'
       run: make report.cov REQUIRE_COVERAGE_UPLOAD=true
+      env:
+        CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
 
     - name: Report coverage to CI (Push)
       if: github.event_name != 'pull_request'
       run: make report.cov
+      env:
+        CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

.github/workflows/perfmon.yml

@@ -1,6 +1,6 @@
 name: Performance Monitor
 
-on: [pull_request]
+on: [push, pull_request]
 
 jobs:
   build-test-perfmon:
@@ -20,19 +20,34 @@ jobs:
     - uses: ./.github/actions/testing-setup
 
     - name: Compile optimized models
+      if: ${{ github.event_name == 'pull_request' }}
       run: >-
         make -j build.prof
         MOM_TARGET_SLUG=$GITHUB_REPOSITORY
         MOM_TARGET_LOCAL_BRANCH=$GITHUB_BASE_REF
         DO_REGRESSION_TESTS=true
 
     - name: Generate profile data
+      if: ${{ github.event_name == 'pull_request' }}
       run: >-
         pip install f90nml &&
         make profile
         DO_REGRESSION_TESTS=true
 
     - name: Generate perf data
+      if: ${{ github.event_name == 'pull_request' }}
       run: |
         sudo sysctl -w kernel.perf_event_paranoid=2
         make perf DO_REGRESSION_TESTS=true
+
+    - name: Compile timing tests
+      run: |
+        make -j build.timing
+
+    - name: Run timing tests
+      run: |
+        make -j run.timing
+
+    - name: Display timing results
+      run: |
+        make -j show.timing

.gitlab-ci.yml

@@ -10,7 +10,6 @@ stages:
 # We use the "fetch" strategy to speed up the startup of stages
 variables:
   JOB_DIR: "/lustre/f2/scratch/oar.gfdl.ogrp-account/runner/builds/$CI_PIPELINE_ID"
-  WORKSPACE: "/lustre/f2/scratch/oar.gfdl.ogrp-account/runner/$CI_RUNNER_ID"
   GIT_STRATEGY: fetch
 
 # Always eport value of $JOB_DIR
@@ -185,9 +184,9 @@ actions:gnu:
     - make -s -j
     - MPIRUN= make preproc -s -j
     - echo -e "\e[0Ksection_end:`date +%s`:compile\r\e[0K"
-    - (echo '#!/bin/bash';echo 'make MPIRUN="srun -mblock --exclusive" WORKSPACE=$WORKSPACE test -s -j') > job.sh
-    - sbatch --clusters=c5 --nodes=2 --time=0:10:00 --account=gfdl_o --qos=debug --job-name=MOM6.gnu.testing --output=log.$CI_JOB_ID --wait job.sh || ( cat log.$CI_JOB_ID ; exit 911 ) && make WORKSPACE=$WORKSPACE test -s
-    - make WORKSPACE=$WORKSPACE test.summary
+    - (echo '#!/bin/bash';echo 'make MPIRUN="srun -mblock --exclusive" test -s -j') > job.sh
+    - sbatch --clusters=c5 --nodes=2 --time=0:10:00 --account=gfdl_o --qos=debug --job-name=MOM6.gnu.testing --output=log.$CI_JOB_ID --wait job.sh || ( cat log.$CI_JOB_ID ; exit 911 ) && make test -s
+    - make test.summary
 
 actions:intel:
   stage: tests
@@ -205,9 +204,9 @@ actions:intel:
     - make -s -j
     - MPIRUN= make preproc -s -j
     - echo -e "\e[0Ksection_end:`date +%s`:compile\r\e[0K"
-    - (echo '#!/bin/bash';echo 'make MPIRUN="srun -mblock --exclusive" WORKSPACE=$WORKSPACE test -s -j') > job.sh
-    - sbatch --clusters=c5 --nodes=2 --time=0:10:00 --account=gfdl_o --qos=debug --job-name=MOM6.intel.testing --output=log.$CI_JOB_ID --wait job.sh || ( cat log.$CI_JOB_ID ; exit 911 ) && make WORKSPACE=$WORKSPACE test -s
-    - make WORKSPACE=$WORKSPACE test.summary
+    - (echo '#!/bin/bash';echo 'make MPIRUN="srun -mblock --exclusive" test -s -j') > job.sh
+    - sbatch --clusters=c5 --nodes=2 --time=0:10:00 --account=gfdl_o --qos=debug --job-name=MOM6.intel.testing --output=log.$CI_JOB_ID --wait job.sh || ( cat log.$CI_JOB_ID ; exit 911 ) && make test -s
+    - make test.summary
 
 # Tests
 #