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create_cafa_targets.sh
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#!/bin/bash
export CAFASOFT='/home/idoerg/soft/CAFA-sp-targets-py3'
export CAFADATA='/home/idoerg/work/CAFA4'
python $CAFASOFT/filter_sp_species.py $CAFADATA/uniprot_sprot.dat 9606 & # "homo sapiens[All Names]"
python $CAFASOFT/filter_sp_species.py $CAFADATA/uniprot_sprot.dat 10090 & # "mus musculus[All Names]"
python $CAFASOFT/filter_sp_species.py $CAFADATA/uniprot_sprot.dat 10116 & # "Rattus norvegicus"
python $CAFASOFT/filter_sp_species.py $CAFADATA/uniprot_sprot.dat 3702 & # "Arabidopsis thaliana[All Names]"
python $CAFASOFT/filter_sp_species.py $CAFADATA/uniprot_sprot.dat 83333 & # "Escherichia coli K-12[all names]"
python $CAFASOFT/filter_sp_species.py $CAFADATA/uniprot_sprot.dat 7227 & # "Drosophila melanogaster[All Names]"
python $CAFASOFT/filter_sp_species.py $CAFADATA/uniprot_sprot.dat 287 & # "Pseudomonas aeruginosa[All Names]"
python $CAFASOFT/filter_sp_species.py $CAFADATA/uniprot_sprot.dat 559292 & # "Saccharomyces cerevisiae ATCC 204508"
python $CAFASOFT/filter_sp_species.py $CAFADATA/uniprot_sprot.dat 559292 & # "Schizosaccharomyces pombe ATCC 24843"
python $CAFASOFT/filter_sp_species.py $CAFADATA/uniprot_sprot.dat 7955 & # "Danio rerio[All Names]"
python $CAFASOFT/filter_sp_species.py $CAFADATA/uniprot_sprot.dat 44689 & # "Dictyostelium discoideum[All Names]"
python $CAFASOFT/filter_sp_species.py $CAFADATA/uniprot_sprot.dat 243273 & # "Mycoplasma genitalium ATCC 33530"
python $CAFASOFT/filter_sp_species.py $CAFADATA/uniprot_sprot.dat 6239 & # "Caenorhabditis elegans[All Names]"
python $CAFASOFT/filter_sp_species.py $CAFADATA/uniprot_sprot.dat 226900 & # "Bacillus cereus ATCC 14579"
python $CAFASOFT/filter_sp_species.py $CAFADATA/uniprot_sprot.dat 4577 & # "Zea Mays [All names]"
python $CAFASOFT/filter_sp_species.py $CAFADATA/uniprot_sprot.dat 9823 & # "Sus scrofa"