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‎NOTES.md

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|Ontology|Version|
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| :---: | :---: |
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|UBERON|2024-09-03|
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|PCL|2024-07-11|
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|CL|2024-09-26|
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|PCL|2024-07-11|
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|UBERON|2024-09-03|
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### ASCT+b Tables
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|Knee|v1.3|revise for October 1, 2024|
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|Large_intestine|v1.4|revise for October 1, 2024|
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|Liver|v1.4|NA|
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|Lung|v1.6|revise for October 1, 2024|
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|Lung|v1.6|December 15, 2024|
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|Lymph_node|v1.5|revise for October 1, 2024|
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|Lymph_vasculature|v1.5|revise for October 1, 2024|
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|Main_Bronchus|v1.3|NA|

‎docs/Anatomical_Systems/README.md

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ASCT+B Validation Reports for Anatomical_Systems (2024-11-20)
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ASCT+B Validation Reports for Anatomical_Systems (2024-11-27)
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=============================================================
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Table of contents

‎docs/Anatomical_Systems/assets/ccf_Anatomical_Systems_graph.pdf

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‎docs/Anatomical_Systems/graph.md

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ASCT+B Validation Reports for Anatomical_Systems (2024-11-20)
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# ASCT+B as Graph

‎docs/Blood/README.md

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ASCT+B Validation Reports for Blood (2024-11-20)
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ASCT+B Validation Reports for Blood (2024-11-27)
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Table of contents

‎docs/Blood/assets/ccf_Blood_graph.pdf

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‎docs/Blood/graph.md

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ASCT+B Validation Reports for Blood (2024-11-20)
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# ASCT+B as Graph

‎docs/Blood_vasculature/README.md

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ASCT+B Validation Reports for Blood_vasculature (2024-11-20)
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ASCT+B Validation Reports for Blood_vasculature (2024-11-27)
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============================================================
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Table of contents

‎docs/Blood_vasculature/assets/ccf_Blood_vasculature_graph.pdf

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‎docs/Blood_vasculature/graph.md

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ASCT+B Validation Reports for Blood_vasculature (2024-11-20)
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ASCT+B Validation Reports for Blood_vasculature (2024-11-27)
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# ASCT+B as Graph

‎docs/Bone-Marrow/README.md

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ASCT+B Validation Reports for Bone-Marrow (2024-11-20)
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ASCT+B Validation Reports for Bone-Marrow (2024-11-27)
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======================================================
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Table of contents

‎docs/Bone-Marrow/assets/ccf_Bone-Marrow_graph.pdf

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‎docs/Bone-Marrow/graph.md

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ASCT+B Validation Reports for Bone-Marrow (2024-11-20)
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======================================================
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# ASCT+B as Graph

‎docs/Brain/README.md

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Table of contents

‎docs/Brain/assets/ccf_Brain_graph.pdf

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‎docs/Brain/graph.md

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# ASCT+B as Graph

‎docs/Eye/Eye_AS_CT_strict_log.tsv

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@@ -3,9 +3,16 @@ CL:0000036 epithelial fate stem cell epithelial fate stem cell UBERON:0000482 ba
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CL:0000066 epithelial cell epithelial cell UBERON:0002506 iris epithelium iris epithelium 61
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CL:0000125 glial cell glial cell UBERON:0018107 foveola of retina foveola of retina 75
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CL:0000125 glial cell glial cell UBERON:0035966 scleral lamina cribrosa scleral lamina cribrosa 65
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CL:0000125 glial cell glial cell UBERON:0004904 neuron projection bundle connecting eye with brain optic nerve 64
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CL:0000125 glial cell glial cell UBERON:0000941 cranial nerve II optic nerve 64
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CL:0000129 microglial cell microglial cell UBERON:0000966 retina retina 48
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CL:0000561 Amacrine Cell Amacrine cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 19
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CL:0000561 Amacrine Cell Amacrine Cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 12
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CL:0000561 Amacrine Cell Amacrine cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 16
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CL:0000561 Amacrine Cell Amacrine cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 13
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CL:0000561 Amacrine Cell Amacrine cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 14
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CL:0000561 Amacrine Cell Amacrine cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 15
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CL:0000561 Amacrine Cell Amacrine cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 18
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CL:0000561 Amacrine Cell Amacrine cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 17
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CL:0000573 retinal cone cell retinal cone cell UBERON:0001789 outer nuclear layer of retina outer nuclear layer 33
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CL:0000604 retinal rod cell retinal rod cell UBERON:0001789 outer nuclear layer of retina outer nuclear layer 51
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CL:0000636 Mueller cell Muller glia UBERON:0001791 inner nuclear layer of retina inner nuclear layer 49
@@ -17,16 +24,11 @@ CL:0002225 secondary lens fiber mature fiber cell UBERON:0000390 lens nucleus Fe
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CL:0002228 primary lens fiber primary lens fiber UBERON:0002444 lens fiber lens Fibers 38
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CL:0002363 keratocyte keratocyte UBERON:0003952 anterior stroma of cornea anterior stroma of cornea 56
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CL:0002585 retinal blood vessel endothelial cell Endothelial Cell UBERON:0004864 vasculature of retina vasculature 34
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CL:0004219 A2 amacrine cell A2 cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 18
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CL:0004232 starburst amacrine cell starburst amacrine cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 19
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CL:0004253 wide field retinal amacrine cell wide field cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 15
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CL:0011004 lens fiber cell lens fiber cell UBERON:0000389 lens cortex cortex 46
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CL:0011004 lens fiber cell lens fiber cell UBERON:0002444 lens fiber lens Fibers 41
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CL:0011004 lens fiber cell lens fiber cell UBERON:0000390 lens nucleus Adult nucleus 45
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CL:0011004 lens fiber cell lens fiber cell UBERON:0002444 lens Fiber lens Fiber 53
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CL:0011004 lens fiber cell lens fiber cell UBERON:0000389 lens cortex cortex 47
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CL:0011004 lens fiber cell lens fiber cell UBERON:0000390 lens nucleus Adult nucleus 45
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CL:0011005 GABAergic interneuron GABAergic interneuron UBERON:0001791 inner nuclear layer of retina inner nuclear layer 13
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CL:0011004 lens fiber cell lens fiber cell UBERON:0002444 lens fiber lens Fibers 41
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CL:0017004 telocyte telocyte UBERON:0003952 anterior stroma of cornea anterior stroma of cornea 57
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CL:4023188 Midget ganglion cell of retina Midget cell UBERON:0001792 ganglionic layer of retina retinal ganglion cell layer 35
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CL:4023189 Parasol ganglion cell of retina Parasol cell UBERON:0001792 ganglionic layer of retina retinal ganglion cell layer 36
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CL:4030028 glycinergic amacrine cell Glycinergic Amacrine Cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 14

‎docs/Eye/Eye_AS_has_part_CT_log.tsv

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s slabel user_slabel o olabel user_olabel row_number
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CL:0000066 epithelial cell epithelial cell UBERON:0002506 iris epithelium iris epithelium 61
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CL:0000561 Amacrine Cell Amacrine Cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 12
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CL:0000561 Amacrine Cell Amacrine cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 13
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CL:0000561 Amacrine Cell Amacrine cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 14
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CL:0000561 Amacrine Cell Amacrine cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 15
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CL:0000561 Amacrine Cell Amacrine cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 16
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CL:0000561 Amacrine Cell Amacrine cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 17
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CL:0000561 Amacrine Cell Amacrine cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 18
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CL:0000561 Amacrine Cell Amacrine cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 19
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CL:0000740 retinal ganglion cell Ganglion cell UBERON:0001792 ganglionic layer of retina retinal ganglion cell layer 37
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CL:0000740 retinal ganglion cell Ganglion cell UBERON:0001792 ganglionic layer of retina retinal ganglion cell layer 69
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CL:0000745 retina horizontal cell Horizontal Cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 39
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CL:0011004 lens fiber cell lens fiber cell UBERON:0002444 lens fiber lens Fibers 41
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CL:0011004 lens fiber cell lens fiber cell UBERON:0002444 lens Fiber lens Fiber 53
9-
CL:0011005 GABAergic interneuron GABAergic interneuron UBERON:0001791 inner nuclear layer of retina inner nuclear layer 13

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