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‎NOTES.md

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|Ontology|Version|
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| :---: | :---: |
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|CL|2024-09-26|
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|PCL|2024-07-11|
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|CL|2024-09-26|
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|UBERON|2024-11-25|
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### ASCT+b Tables
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|Organ|Version|Date|
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| :---: | :---: | :---: |
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|Anatomical_Systems|v1.1|June 15, 2024|
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|Anatomical_Systems|v1.1|December 15, 2024|
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|Blood|v1.5|NA|
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|Bone-Marrow|v1.6|NA|
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|Brain|v1.7|NA|
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|Eye|v1.4|revise for October 1, 2024|
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|Fallopian_tube|v1.4|prepare for October 1, 2024|
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|Heart|v1.5|NA|
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|Kidney|v1.6|revise for October 1, 2024|
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|Brain|v1.7|December 15, 2024|
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|Eye|v1.4|December 15, 2024|
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|Fallopian_tube|v1.4|December 15, 2024|
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|Heart|v1.5|December 15, 2024|
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|Kidney|v1.6|December 15, 2024|
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|Knee|v1.3|revise for October 1, 2024|
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|Large_intestine|v1.4|revise for October 1, 2024|
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|Liver|v1.4|NA|
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|Lung|v1.6|December 15, 2024|
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|Lung|v1.6|prepare for April 1, 2025|
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|Lymph_node|v1.5|revise for October 1, 2024|
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|Lymph_vasculature|v1.5|revise for October 1, 2024|
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|Main_Bronchus|v1.3|NA|
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|Skeleton|v1.3|revise for October 1, 2024|
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|Skin|v1.4|Revise for October 1, 2024|
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|Small_intestine|v1.2|revise for October 1, 2024|
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|Spinal_Cord|v1.0|revise for April 1, 2024|
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|Spinal_Cord|v1.1|December 15, 2024|
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|Spleen|v1.4|revise for April 1, 2024|
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|Thymus|v1.5|revise for April 1, 2024|
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|Trachea|v1.1|revise for October 1|
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|Ureter|NA|revise for April 2023|
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|Urinary_bladder|v1.1|revise for April 2024|
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|Uterus|v1.2|revise for April 1, 2024|
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|Blood_vasculature|v1.7|September 24, 2024|
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|Blood_vasculature|v1.7|December 15, 2024|

‎docs/Anatomical_Systems/README.md

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ASCT+B Validation Reports for Anatomical_Systems (2024-12-04)
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ASCT+B Validation Reports for Anatomical_Systems (2024-12-11)
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=============================================================
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Table of contents
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If the name/label in the ontology contains *obsolete*, please look into OLS, clicking on the term ID, for its replacement.
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1. The term _[UBERON:0011143](http://purl.obolibrary.org/obo/UBERON_0011143)_ has a different name/label in the source ontology in the following 2 rows _[44](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=44:44)_, _[44](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=44:44)_. The name/label in the **ASCT+B table** is _kidney_ and the one in the **ontology** is _upper urinary tract_. For reference, the given name/label **by SMEs** is _kidney_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.
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- No issues found.
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## Blank ontology ID
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| | s | slabel | user_slabel | o | olabel | user_olabel | row_number | deltaIC |
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|----|-----------------------------------------------------------------|--------------------|--------------------|-----------------------------------------------------------------|----------------------------|----------------------------|---------------------------------------------------------------------------------------------------------------------------|-----------|
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| 0 | [UBERON:0001033](http://purl.obolibrary.org/obo/UBERON_0001033) | gustatory system | gustatory system | [UBERON:0001007](http://purl.obolibrary.org/obo/UBERON_0001007) | digestive system | digestive system | [30](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=30:30) | nan |
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| 1 | [UBERON:0004175](http://purl.obolibrary.org/obo/UBERON_0004175) | internal genitalia | internal genitalia | [UBERON:0000474](http://purl.obolibrary.org/obo/UBERON_0000474) | female reproductive system | female reproductive system | [49](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=49:49) | nan |
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| 2 | [UBERON:0004175](http://purl.obolibrary.org/obo/UBERON_0004175) | internal genitalia | internal genitalia | [UBERON:0000474](http://purl.obolibrary.org/obo/UBERON_0000474) | female reproductive system | female reproductive system | [50](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=50:50) | nan |
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| 0 | [UBERON:0001033](http://purl.obolibrary.org/obo/UBERON_0001033) | gustatory system | gustatory system | [UBERON:0001007](http://purl.obolibrary.org/obo/UBERON_0001007) | digestive system | digestive system | [28](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=28:28) | nan |
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| 1 | [UBERON:0004175](http://purl.obolibrary.org/obo/UBERON_0004175) | internal genitalia | internal genitalia | [UBERON:0000474](http://purl.obolibrary.org/obo/UBERON_0000474) | female reproductive system | female reproductive system | [47](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=47:47) | nan |
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| 2 | [UBERON:0004175](http://purl.obolibrary.org/obo/UBERON_0004175) | internal genitalia | internal genitalia | [UBERON:0000474](http://purl.obolibrary.org/obo/UBERON_0000474) | female reproductive system | female reproductive system | [48](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=48:48) | nan |
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‎docs/Anatomical_Systems/assets/ccf_Anatomical_Systems_graph.pdf

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‎docs/Anatomical_Systems/class_Anatomical_Systems_indirect_log.tsv

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s slabel user_slabel o olabel user_olabel row_number
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UBERON:0000017 exocrine pancreas exocrine pancreas UBERON:0002330 exocrine system exocrine system 31
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UBERON:0000065 respiratory tract respiratory tract UBERON:0001004 respiratory system respiratory system 43
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UBERON:0000065 respiratory tract respiratory tract UBERON:0001004 respiratory system respiratory system 42
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UBERON:0000065 respiratory tract respiratory tract UBERON:0001004 respiratory system respiratory system 41
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UBERON:0000017 exocrine pancreas exocrine pancreas UBERON:0002330 exocrine system exocrine system 29
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UBERON:0000065 respiratory tract respiratory tract UBERON:0001004 respiratory system respiratory system 39
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UBERON:0000065 respiratory tract respiratory tract UBERON:0001004 respiratory system respiratory system 38
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UBERON:0000065 respiratory tract respiratory tract UBERON:0001004 respiratory system respiratory system 40
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UBERON:0000992 ovary ovary UBERON:0000474 female reproductive system female reproductive system 48
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UBERON:0001224 renal pelvis renal pelvis UBERON:0011143 upper urinary tract kidney 44
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UBERON:0001557 upper respiratory tract upper respiratory tract UBERON:0000065 respiratory tract respiratory tract 40
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UBERON:0001558 lower respiratory tract lower respiratory tract UBERON:0000065 respiratory tract respiratory tract 42
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UBERON:0001558 lower respiratory tract lower respiratory tract UBERON:0000065 respiratory tract respiratory tract 43
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UBERON:0001558 lower respiratory tract lower respiratory tract UBERON:0000065 respiratory tract respiratory tract 41
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UBERON:0001911 mammary gland mammary gland UBERON:0002416 integumental system integumental system 39
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UBERON:0002048 lung lung UBERON:0000170 pair of lungs pair of lungs 41
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UBERON:0002106 spleen spleen UBERON:0002390 hematopoietic system hematopoietic system 34
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UBERON:0000065 respiratory tract respiratory tract UBERON:0001004 respiratory system respiratory system 41
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UBERON:0000992 ovary ovary UBERON:0000474 female reproductive system female reproductive system 46
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UBERON:0001911 mammary gland mammary gland UBERON:0002416 integumental system integumental system 37
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UBERON:0002048 lung lung UBERON:0000170 pair of lungs pair of lungs 39
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UBERON:0002106 spleen spleen UBERON:0002390 hematopoietic system hematopoietic system 32
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UBERON:0002107 liver liver UBERON:0001007 digestive system digestive system 15
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UBERON:0002370 thymus thymus UBERON:0002390 hematopoietic system hematopoietic system 35
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UBERON:0003729 mouth mucosa mouth mucosa UBERON:0000165 mouth mouth 21
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UBERON:0002370 thymus thymus UBERON:0002390 hematopoietic system hematopoietic system 33
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UBERON:0003729 mouth mucosa mouth mucosa UBERON:0000165 mouth mouth 20
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UBERON:0003889 fallopian tube fallopian tube UBERON:0003975 internal female genitalia internal female genitalia 49
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UBERON:0003729 mouth mucosa mouth mucosa UBERON:0000165 mouth mouth 21
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UBERON:0003889 fallopian tube fallopian tube UBERON:0003975 internal female genitalia internal female genitalia 47
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UBERON:0004537 blood vasculature blood vasculature UBERON:0004535 cardiovascular system cardiovascular system 14
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UBERON:0010147 male accessory sex gland male accessory sex gland UBERON:0000079 male reproductive system male reproductive system 52
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UBERON:0011143 upper urinary tract upper urinary tract UBERON:0001008 renal system renal system 46
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UBERON:0010147 male accessory sex gland male accessory sex gland UBERON:0000079 male reproductive system male reproductive system 50
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UBERON:0011143 upper urinary tract upper urinary tract UBERON:0001008 renal system renal system 44
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UBERON:0011143 upper urinary tract upper urinary tract UBERON:0001008 renal system renal system 45
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UBERON:0011143 upper urinary tract upper urinary tract UBERON:0001008 renal system renal system 42
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UBERON:0011143 upper urinary tract upper urinary tract UBERON:0001008 renal system renal system 43

‎docs/Anatomical_Systems/class_Anatomical_Systems_log.tsv

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s slabel user_slabel o olabel user_olabel row_number deltaIC
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UBERON:0001033 gustatory system gustatory system UBERON:0001007 digestive system digestive system 30
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UBERON:0004175 internal genitalia internal genitalia UBERON:0000474 female reproductive system female reproductive system 49
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UBERON:0004175 internal genitalia internal genitalia UBERON:0000474 female reproductive system female reproductive system 50
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UBERON:0001033 gustatory system gustatory system UBERON:0001007 digestive system digestive system 28
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UBERON:0004175 internal genitalia internal genitalia UBERON:0000474 female reproductive system female reproductive system 47
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UBERON:0004175 internal genitalia internal genitalia UBERON:0000474 female reproductive system female reproductive system 48

‎docs/Anatomical_Systems/graph.md

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# ASCT+B as Graph

‎docs/Anatomical_Systems/logs_dict.json

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{
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"diff_label": [
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{
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"id": "UBERON:0011143",
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"label": "upper urinary tract",
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"asct_label": "kidney",
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"user_label": "kidney",
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"row_number": 44
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},
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{
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"id": "UBERON:0011143",
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"label": "upper urinary tract",
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"asct_label": "kidney",
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"user_label": "kidney",
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"row_number": 44
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}
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],
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"diff_label": [],
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"no_parent": []
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}

‎docs/Blood/README.md

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Table of contents

‎docs/Blood/assets/ccf_Blood_graph.pdf

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‎docs/Blood/graph.md

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# ASCT+B as Graph

‎docs/Blood_vasculature/README.md

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‎docs/Blood_vasculature/graph.md

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# ASCT+B as Graph

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