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‎NOTES.md

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|Ontology|Version|
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| :---: | :---: |
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|UBERON|2024-09-03|
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|CL|2024-09-26|
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|PCL|2024-07-11|
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|CL|2024-09-26|
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### ASCT+b Tables
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‎docs/Anatomical_Systems/README.md

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ASCT+B Validation Reports for Anatomical_Systems (2024-10-30)
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ASCT+B Validation Reports for Anatomical_Systems (2024-11-06)
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=============================================================
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Table of contents

‎docs/Anatomical_Systems/assets/ccf_Anatomical_Systems_graph.pdf

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‎docs/Anatomical_Systems/graph.md

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ASCT+B Validation Reports for Anatomical_Systems (2024-11-06)
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=============================================================
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# ASCT+B as Graph

‎docs/Blood/README.md

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ASCT+B Validation Reports for Blood (2024-11-06)
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================================================
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Table of contents

‎docs/Blood/assets/ccf_Blood_graph.pdf

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‎docs/Blood/graph.md

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ASCT+B Validation Reports for Blood (2024-11-06)
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================================================
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# ASCT+B as Graph

‎docs/Blood_vasculature/README.md

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ASCT+B Validation Reports for Blood_vasculature (2024-10-30)
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ASCT+B Validation Reports for Blood_vasculature (2024-11-06)
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============================================================
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Table of contents

‎docs/Blood_vasculature/assets/ccf_Blood_vasculature_graph.pdf

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‎docs/Blood_vasculature/graph.md

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ASCT+B Validation Reports for Blood_vasculature (2024-10-30)
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ASCT+B Validation Reports for Blood_vasculature (2024-11-06)
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============================================================
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# ASCT+B as Graph

‎docs/Bone-Marrow/README.md

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ASCT+B Validation Reports for Bone-Marrow (2024-10-30)
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ASCT+B Validation Reports for Bone-Marrow (2024-11-06)
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======================================================
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Table of contents

‎docs/Bone-Marrow/assets/ccf_Bone-Marrow_graph.pdf

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‎docs/Bone-Marrow/graph.md

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ASCT+B Validation Reports for Bone-Marrow (2024-10-30)
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ASCT+B Validation Reports for Bone-Marrow (2024-11-06)
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======================================================
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# ASCT+B as Graph

‎docs/Brain/README.md

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ASCT+B Validation Reports for Brain (2024-10-30)
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ASCT+B Validation Reports for Brain (2024-11-06)
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================================================
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Table of contents

‎docs/Brain/assets/ccf_Brain_graph.pdf

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‎docs/Brain/graph.md

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ASCT+B Validation Reports for Brain (2024-10-30)
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ASCT+B Validation Reports for Brain (2024-11-06)
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================================================
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# ASCT+B as Graph

‎docs/Eye/README.md

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ASCT+B Validation Reports for Eye (2024-10-30)
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ASCT+B Validation Reports for Eye (2024-11-06)
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==============================================
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Table of contents
@@ -52,10 +52,10 @@ If the term's name/label and the name/label given by SME are too different, plea
5252

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If the name/label in the ontology contains *obsolete*, please look into OLS, clicking on the term ID, for its replacement.
5454

55-
1. The term _[UBERON:0004904](http://purl.obolibrary.org/obo/UBERON_0004904)_ has a different name/label in the source ontology in the following 2 rows _[70](https://docs.google.com/spreadsheets/d/1tNNPZXL0ycw5gNksDUKHZJpRkKgRdVAUh9AZ6ohpgOA/edit#gid=695483621&range=70:70)_, _[70](https://docs.google.com/spreadsheets/d/1tNNPZXL0ycw5gNksDUKHZJpRkKgRdVAUh9AZ6ohpgOA/edit#gid=695483621&range=70:70)_. The name/label in the **ASCT+B table** is _optic nerve_ and the one in the **ontology** is _neuron projection bundle connecting eye with brain_. For reference, the given name/label **by SMEs** is _neuron projection bundle connecting eye with brain_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.
56-
5755
1. The term _[UBERON:0000965](http://purl.obolibrary.org/obo/UBERON_0000965)_ has a different name/label in the source ontology in the following 2 rows _[59](https://docs.google.com/spreadsheets/d/1tNNPZXL0ycw5gNksDUKHZJpRkKgRdVAUh9AZ6ohpgOA/edit#gid=695483621&range=59:59)_, _[59](https://docs.google.com/spreadsheets/d/1tNNPZXL0ycw5gNksDUKHZJpRkKgRdVAUh9AZ6ohpgOA/edit#gid=695483621&range=59:59)_. The name/label in the **ASCT+B table** is _lens_ and the one in the **ontology** is _lens of camera-type eye_. For reference, the given name/label **by SMEs** is _lens_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.
5856

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1. The term _[UBERON:0004904](http://purl.obolibrary.org/obo/UBERON_0004904)_ has a different name/label in the source ontology in the following 2 rows _[70](https://docs.google.com/spreadsheets/d/1tNNPZXL0ycw5gNksDUKHZJpRkKgRdVAUh9AZ6ohpgOA/edit#gid=695483621&range=70:70)_, _[70](https://docs.google.com/spreadsheets/d/1tNNPZXL0ycw5gNksDUKHZJpRkKgRdVAUh9AZ6ohpgOA/edit#gid=695483621&range=70:70)_. The name/label in the **ASCT+B table** is _optic nerve_ and the one in the **ontology** is _neuron projection bundle connecting eye with brain_. For reference, the given name/label **by SMEs** is _neuron projection bundle connecting eye with brain_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.
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5959

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## Blank ontology ID
6161

‎docs/Eye/assets/ccf_Eye_graph.pdf

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‎docs/Eye/graph.md

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ASCT+B Validation Reports for Eye (2024-10-30)
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ASCT+B Validation Reports for Eye (2024-11-06)
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==============================================
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# ASCT+B as Graph

‎docs/Eye/logs_dict.json

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],
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"no_found_id": [],
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"diff_label": [
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{
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"id": "UBERON:0004904",
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"label": "neuron projection bundle connecting eye with brain",
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"asct_label": "optic nerve",
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"user_label": "neuron projection bundle connecting eye with brain",
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"row_number": 70
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},
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{
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"id": "UBERON:0004904",
93-
"label": "neuron projection bundle connecting eye with brain",
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"asct_label": "optic nerve",
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"user_label": "neuron projection bundle connecting eye with brain",
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"row_number": 70
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},
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{
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"id": "UBERON:0000965",
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"label": "lens of camera-type eye",
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"asct_label": "lens",
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"user_label": "lens",
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"row_number": 59
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},
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{
99+
"id": "UBERON:0004904",
100+
"label": "neuron projection bundle connecting eye with brain",
101+
"asct_label": "optic nerve",
102+
"user_label": "neuron projection bundle connecting eye with brain",
103+
"row_number": 70
104+
},
105+
{
106+
"id": "UBERON:0004904",
107+
"label": "neuron projection bundle connecting eye with brain",
108+
"asct_label": "optic nerve",
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"user_label": "neuron projection bundle connecting eye with brain",
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"row_number": 70
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}
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],
113113
"no_parent": [

‎docs/Fallopian_tube/README.md

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ASCT+B Validation Reports for Fallopian_tube (2024-10-30)
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ASCT+B Validation Reports for Fallopian_tube (2024-11-06)
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=========================================================
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Table of contents

‎docs/Fallopian_tube/assets/ccf_Fallopian_tube_graph.pdf

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‎docs/Fallopian_tube/graph.md

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ASCT+B Validation Reports for Fallopian_tube (2024-10-30)
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ASCT+B Validation Reports for Fallopian_tube (2024-11-06)
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=========================================================
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# ASCT+B as Graph

‎docs/Heart/README.md

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ASCT+B Validation Reports for Heart (2024-10-30)
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ASCT+B Validation Reports for Heart (2024-11-06)
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================================================
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Table of contents
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If the name/label in the ontology contains *obsolete*, please look into OLS, clicking on the term ID, for its replacement.
5454

55-
1. The term _[CL:0000097](http://purl.obolibrary.org/obo/CL_0000097)_ has a different name/label in the source ontology in the following 4 rows _[104](https://docs.google.com/spreadsheets/d/1kDn3zoY_5NmGCfemBLdshDT7JVUWtEMSGBrD4jsHeK0/edit#gid=1759721736&range=104:104)_, _[152](https://docs.google.com/spreadsheets/d/1kDn3zoY_5NmGCfemBLdshDT7JVUWtEMSGBrD4jsHeK0/edit#gid=1759721736&range=152:152)_, _[158](https://docs.google.com/spreadsheets/d/1kDn3zoY_5NmGCfemBLdshDT7JVUWtEMSGBrD4jsHeK0/edit#gid=1759721736&range=158:158)_, _[212](https://docs.google.com/spreadsheets/d/1kDn3zoY_5NmGCfemBLdshDT7JVUWtEMSGBrD4jsHeK0/edit#gid=1759721736&range=212:212)_. The name/label in the **ASCT+B table** is _mast cell _ and the one in the **ontology** is _mast cell_. For reference, the given name/label **by SMEs** is _mast cell_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.
56-
5755
1. The term _[CL:0000136](http://purl.obolibrary.org/obo/CL_0000136)_ has a different name/label in the source ontology in the following 5 rows _[37](https://docs.google.com/spreadsheets/d/1kDn3zoY_5NmGCfemBLdshDT7JVUWtEMSGBrD4jsHeK0/edit#gid=1759721736&range=37:37)_, _[48](https://docs.google.com/spreadsheets/d/1kDn3zoY_5NmGCfemBLdshDT7JVUWtEMSGBrD4jsHeK0/edit#gid=1759721736&range=48:48)_, _[90](https://docs.google.com/spreadsheets/d/1kDn3zoY_5NmGCfemBLdshDT7JVUWtEMSGBrD4jsHeK0/edit#gid=1759721736&range=90:90)_, _[103](https://docs.google.com/spreadsheets/d/1kDn3zoY_5NmGCfemBLdshDT7JVUWtEMSGBrD4jsHeK0/edit#gid=1759721736&range=103:103)_, _[186](https://docs.google.com/spreadsheets/d/1kDn3zoY_5NmGCfemBLdshDT7JVUWtEMSGBrD4jsHeK0/edit#gid=1759721736&range=186:186)_. The name/label in the **ASCT+B table** is _fat cell_ and the one in the **ontology** is _adipocyte_. For reference, the given name/label **by SMEs** is _adipocyte_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.
5856

57+
1. The term _[CL:0000097](http://purl.obolibrary.org/obo/CL_0000097)_ has a different name/label in the source ontology in the following 4 rows _[104](https://docs.google.com/spreadsheets/d/1kDn3zoY_5NmGCfemBLdshDT7JVUWtEMSGBrD4jsHeK0/edit#gid=1759721736&range=104:104)_, _[152](https://docs.google.com/spreadsheets/d/1kDn3zoY_5NmGCfemBLdshDT7JVUWtEMSGBrD4jsHeK0/edit#gid=1759721736&range=152:152)_, _[158](https://docs.google.com/spreadsheets/d/1kDn3zoY_5NmGCfemBLdshDT7JVUWtEMSGBrD4jsHeK0/edit#gid=1759721736&range=158:158)_, _[212](https://docs.google.com/spreadsheets/d/1kDn3zoY_5NmGCfemBLdshDT7JVUWtEMSGBrD4jsHeK0/edit#gid=1759721736&range=212:212)_. The name/label in the **ASCT+B table** is _mast cell _ and the one in the **ontology** is _mast cell_. For reference, the given name/label **by SMEs** is _mast cell_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.
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5959

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## Blank ontology ID
6161

‎docs/Heart/assets/ccf_Heart_graph.pdf

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‎docs/Heart/graph.md

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ASCT+B Validation Reports for Heart (2024-10-30)
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ASCT+B Validation Reports for Heart (2024-11-06)
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================================================
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# ASCT+B as Graph

‎docs/Heart/logs_dict.json

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],
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"no_found_id": [],
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"diff_label": [
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{
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"id": "CL:0000097",
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"label": "mast cell",
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"asct_label": "mast cell ",
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"user_label": "mast cell",
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"row_number": 104
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},
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{
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"id": "CL:0000097",
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"label": "mast cell",
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"asct_label": "mast cell ",
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"user_label": "mast cell",
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"row_number": 152
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},
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{
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"id": "CL:0000097",
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"label": "mast cell",
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"asct_label": "mast cell ",
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"user_label": "mast cell",
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"row_number": 158
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},
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{
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"id": "CL:0000097",
677-
"label": "mast cell",
678-
"asct_label": "mast cell ",
679-
"user_label": "mast cell",
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"row_number": 212
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},
682654
{
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"id": "CL:0000136",
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"label": "adipocyte",
@@ -713,6 +685,34 @@
713685
"asct_label": "fat cell",
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"user_label": "adipocyte",
715687
"row_number": 186
688+
},
689+
{
690+
"id": "CL:0000097",
691+
"label": "mast cell",
692+
"asct_label": "mast cell ",
693+
"user_label": "mast cell",
694+
"row_number": 104
695+
},
696+
{
697+
"id": "CL:0000097",
698+
"label": "mast cell",
699+
"asct_label": "mast cell ",
700+
"user_label": "mast cell",
701+
"row_number": 152
702+
},
703+
{
704+
"id": "CL:0000097",
705+
"label": "mast cell",
706+
"asct_label": "mast cell ",
707+
"user_label": "mast cell",
708+
"row_number": 158
709+
},
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{
711+
"id": "CL:0000097",
712+
"label": "mast cell",
713+
"asct_label": "mast cell ",
714+
"user_label": "mast cell",
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"row_number": 212
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}
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],
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"no_parent": []

‎docs/Kidney/README.md

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ASCT+B Validation Reports for Kidney (2024-10-30)
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ASCT+B Validation Reports for Kidney (2024-11-06)
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=================================================
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If the name/label in the ontology contains *obsolete*, please look into OLS, clicking on the term ID, for its replacement.
5454

55-
1. The term _[CL:1000718](http://purl.obolibrary.org/obo/CL_1000718)_ has a different name/label in the source ontology in the following 1 row _[51](https://docs.google.com/spreadsheets/d/1CS-Tplkosorg8q6Ci8oALTvt9ufvEyDmCNAI2LsKM_g/edit#gid=949267305&range=51:51)_. The name/label in the **ASCT+B table** is _kidney inner medulla collecting duct_ and the one in the **ontology** is _kidney inner medulla collecting duct principal cell_. For reference, the given name/label **by SMEs** is _Inner Medullary Collecting Duct Cell_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.
55+
1. The term _[UBERON:8600037](http://purl.obolibrary.org/obo/UBERON_8600037)_ has a different name/label in the source ontology in the following 2 rows _[33](https://docs.google.com/spreadsheets/d/1CS-Tplkosorg8q6Ci8oALTvt9ufvEyDmCNAI2LsKM_g/edit#gid=949267305&range=33:33)_, _[33](https://docs.google.com/spreadsheets/d/1CS-Tplkosorg8q6Ci8oALTvt9ufvEyDmCNAI2LsKM_g/edit#gid=949267305&range=33:33)_. The name/label in the **ASCT+B table** is _long descending limb of the loop of Henle in the inner medulla_ and the one in the **ontology** is _kidney loop of Henle long descending thin limb inner medulla_. For reference, the given name/label **by SMEs** is _descending thin limb of loop of Henle 3_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.
5656

5757
1. The term _[CL:0000653](http://purl.obolibrary.org/obo/CL_0000653)_ has a different name/label in the source ontology in the following 2 rows _[14](https://docs.google.com/spreadsheets/d/1CS-Tplkosorg8q6Ci8oALTvt9ufvEyDmCNAI2LsKM_g/edit#gid=949267305&range=14:14)_, _[20](https://docs.google.com/spreadsheets/d/1CS-Tplkosorg8q6Ci8oALTvt9ufvEyDmCNAI2LsKM_g/edit#gid=949267305&range=20:20)_. The name/label in the **ASCT+B table** is _glomerular visceral epithelial cell_ and the one in the **ontology** is _podocyte_. For reference, the given name/label **by SMEs** is _Podocyte_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.
5858

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1. The term _[UBERON:8600036](http://purl.obolibrary.org/obo/UBERON_8600036)_ has a different name/label in the source ontology in the following 4 rows _[17](https://docs.google.com/spreadsheets/d/1CS-Tplkosorg8q6Ci8oALTvt9ufvEyDmCNAI2LsKM_g/edit#gid=949267305&range=17:17)_, _[17](https://docs.google.com/spreadsheets/d/1CS-Tplkosorg8q6Ci8oALTvt9ufvEyDmCNAI2LsKM_g/edit#gid=949267305&range=17:17)_, _[32](https://docs.google.com/spreadsheets/d/1CS-Tplkosorg8q6Ci8oALTvt9ufvEyDmCNAI2LsKM_g/edit#gid=949267305&range=32:32)_, _[32](https://docs.google.com/spreadsheets/d/1CS-Tplkosorg8q6Ci8oALTvt9ufvEyDmCNAI2LsKM_g/edit#gid=949267305&range=32:32)_. The name/label in the **ASCT+B table** is _long descending limb of the loop of Henle in the outer medulla _ and the one in the **ontology** is _kidney loop of Henle long descending thin limb outer medulla_. For reference, the given name/label **by SMEs** is _descending thin limb of loop of Henle 2_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.
59+
1. The term _[CL:1000718](http://purl.obolibrary.org/obo/CL_1000718)_ has a different name/label in the source ontology in the following 1 row _[51](https://docs.google.com/spreadsheets/d/1CS-Tplkosorg8q6Ci8oALTvt9ufvEyDmCNAI2LsKM_g/edit#gid=949267305&range=51:51)_. The name/label in the **ASCT+B table** is _kidney inner medulla collecting duct_ and the one in the **ontology** is _kidney inner medulla collecting duct principal cell_. For reference, the given name/label **by SMEs** is _Inner Medullary Collecting Duct Cell_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.
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6161
1. The term _[CL:1000454](http://purl.obolibrary.org/obo/CL_1000454)_ has a different name/label in the source ontology in the following 1 row _[52](https://docs.google.com/spreadsheets/d/1CS-Tplkosorg8q6Ci8oALTvt9ufvEyDmCNAI2LsKM_g/edit#gid=949267305&range=52:52)_. The name/label in the **ASCT+B table** is _kidney collecting duct epithelial cell _ and the one in the **ontology** is _kidney collecting duct epithelial cell_. For reference, the given name/label **by SMEs** is _kidney collecting duct epithelial cell _. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.
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1. The term _[UBERON:8600037](http://purl.obolibrary.org/obo/UBERON_8600037)_ has a different name/label in the source ontology in the following 2 rows _[33](https://docs.google.com/spreadsheets/d/1CS-Tplkosorg8q6Ci8oALTvt9ufvEyDmCNAI2LsKM_g/edit#gid=949267305&range=33:33)_, _[33](https://docs.google.com/spreadsheets/d/1CS-Tplkosorg8q6Ci8oALTvt9ufvEyDmCNAI2LsKM_g/edit#gid=949267305&range=33:33)_. The name/label in the **ASCT+B table** is _long descending limb of the loop of Henle in the inner medulla_ and the one in the **ontology** is _kidney loop of Henle long descending thin limb inner medulla_. For reference, the given name/label **by SMEs** is _descending thin limb of loop of Henle 3_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.
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1. The term _[UBERON:8600036](http://purl.obolibrary.org/obo/UBERON_8600036)_ has a different name/label in the source ontology in the following 4 rows _[17](https://docs.google.com/spreadsheets/d/1CS-Tplkosorg8q6Ci8oALTvt9ufvEyDmCNAI2LsKM_g/edit#gid=949267305&range=17:17)_, _[17](https://docs.google.com/spreadsheets/d/1CS-Tplkosorg8q6Ci8oALTvt9ufvEyDmCNAI2LsKM_g/edit#gid=949267305&range=17:17)_, _[32](https://docs.google.com/spreadsheets/d/1CS-Tplkosorg8q6Ci8oALTvt9ufvEyDmCNAI2LsKM_g/edit#gid=949267305&range=32:32)_, _[32](https://docs.google.com/spreadsheets/d/1CS-Tplkosorg8q6Ci8oALTvt9ufvEyDmCNAI2LsKM_g/edit#gid=949267305&range=32:32)_. The name/label in the **ASCT+B table** is _long descending limb of the loop of Henle in the outer medulla _ and the one in the **ontology** is _kidney loop of Henle long descending thin limb outer medulla_. For reference, the given name/label **by SMEs** is _descending thin limb of loop of Henle 2_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.
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‎docs/Kidney/assets/ccf_Kidney_graph.pdf

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ASCT+B Validation Reports for Kidney (2024-10-30)
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ASCT+B Validation Reports for Kidney (2024-11-06)
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# ASCT+B as Graph

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