@@ -15,50 +15,50 @@ This repository hosts the course material for the SIB course
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## Program
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- Wednesday, May 27 |
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- -----------------:|:-------------------------------------------------------
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- 9:00 - 9:30 | Welcome and setup of working environment (* C. Soneson* )<br >- Zoom<br >- slack workspace<br >- HackMD document<br >- Introducing participants (ice breaker)
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- 9:30 - 10:00 | Introduction to Renku (* R. Roskar* )
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- 10:00 - 10:30 | Introduction to the course (* M. Stadler* )<br >- Course overview, expected background<br >- Prepare renku workspace
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- 10:30 - 10:45 | * Break*
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- 10:45 - 11:15 | Combining the best of two worlds: Python + R (introduction, * M. Stadler* )
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- 11:15 - 11:30 | * Break*
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- 11:30 - 12:30 | Combining the best of two worlds: Python + R (interactive exercise, * M. Stadler* )
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- 12:30 - 13:30 | * Lunch*
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- 13:30 - 14:30 | Python + R (continued)
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- 14:30 - 14:45 | * Break*
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- 14:45 - 15:30 | Beyond cellranger: Quantification of gene expression (presentation, * A. Srivastava* )
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- 15:30 - 15:45 | * Break*
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- 15:45 - 16:45 | Quantification of gene expression (exercises, * A. Srivastava* )
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- 16:45 - 17:00 | * Break*
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- 17:00 - 18:00 | Quantification of gene expression (continued)
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+ | Wednesday, May 27 | |
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+ | ------------------ :| :-------------------------------------------------------|
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+ | 9:00 - 9:30 | Welcome and setup of working environment (* C. Soneson* )<ul >< li > Zoom</ li >< li > slack workspace</ li >< li > HackMD document</ li >< li > Introducing participants (ice breaker)</ li ></ ul > |
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+ | 9:30 - 10:00 | Introduction to Renku (* R. Roskar* ) |
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+ | 10:00 - 10:30 | Introduction to the course (* M. Stadler* )<ul >< li > Course overview, expected background</ li >< li > Prepare renku workspace</ li ></ ul > |
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+ | 10:30 - 10:45 | * Break* |
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+ | 10:45 - 11:15 | Combining the best of two worlds: Python + R (introduction, * M. Stadler* ) |
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+ | 11:15 - 11:30 | * Break* |
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+ | 11:30 - 12:30 | Combining the best of two worlds: Python + R (interactive exercise, * M. Stadler* ) |
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+ | 12:30 - 13:30 | * Lunch* |
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+ | 13:30 - 14:30 | Python + R (continued) |
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+ | 14:30 - 14:45 | * Break* |
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+ | 14:45 - 15:30 | Beyond cellranger: Quantification of gene expression (presentation, * A. Srivastava* ) |
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+ | 15:30 - 15:45 | * Break* |
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+ | 15:45 - 16:45 | Quantification of gene expression (exercises, * A. Srivastava* ) |
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+ | 16:45 - 17:00 | * Break* |
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+ | 17:00 - 18:00 | Quantification of gene expression (continued) |
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- Thursday, May 28 |
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- -----------------:|:-------------------------------------------------------
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- 9:00 - 10:00 | RNA velocity (presentation, * C. Soneson* )
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- 10:00 - 10:15 | * Break*
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- 10:15 - 11:15 | RNA velocity (exercises, * C. Soneson* )
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- 11:15 - 11:30 | * Break*
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- 11:30 - 12:30 | RNA velocity (continued)
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- 12:30 - 14:00 | * Lunch*
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- 14:00 - 15:00 | Spatial transcriptomics (presentation, * A. Andersson* )
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- 15:00 - 15:15 | * Break*
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- 15:15 - 16:15 | Spatial transcriptomics (exercises, * A. Andersson* )
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- 16:15 - 16:30 | * Break*
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- 16:30 - 17:30 | Spatial transcriptomics (continued)
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+ | Thursday, May 28 | |
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+ | -----------------:| :-------------------------------------------------------|
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+ | 9:00 - 10:00 | RNA velocity (presentation, * C. Soneson* ) |
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+ | 10:00 - 10:15 | * Break* |
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+ | 10:15 - 11:15 | RNA velocity (exercises, * C. Soneson* ) |
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+ | 11:15 - 11:30 | * Break* |
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+ | 11:30 - 12:30 | RNA velocity (continued) |
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+ | 12:30 - 14:00 | * Lunch* |
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+ | 14:00 - 15:00 | Spatial transcriptomics (presentation, * A. Andersson* ) |
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+ | 15:00 - 15:15 | * Break* |
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+ | 15:15 - 16:15 | Spatial transcriptomics (exercises, * A. Andersson* ) |
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+ | 16:15 - 16:30 | * Break* |
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+ | 16:30 - 17:30 | Spatial transcriptomics (continued) |
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- Friday, May 29 |
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- -----------------:|:-------------------------------------------------------
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- 9:00 - 10:00 | Working with on-disk data formats (presentation, * M. Smith* )
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- 10:00 - 10:15 | * Break*
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- 10:15 - 11:15 | Working with on-disk data formats (exercises, * M. Smith* )
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- 11:15 - 11:30 | * Break*
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- 11:30 - 12:30 | Working with on-disk data formats (continued)
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- 12:30 - 13:30 | * Lunch*
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- 13:30 - 14:30 | Deep Generative Networks (presentation and exercises, * P. Papasaikas* )
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- 14:30 - 14:45 | * Break*
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- 14:45 - 15:45 | Deep Generative Networks (continued)
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- 15:45 - 16:00 | * Break*
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- 16:00 - 17:00 | Deep Generative Networks (continued)
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- 17:00 - 17:30 | Wrap-up (feedback form, slack workspace, all)
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+ | Friday, May 29 | |
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+ | -----------------:| :-------------------------------------------------------|
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+ | 9:00 - 10:00 | Working with on-disk data formats (presentation, * M. Smith* ) |
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+ | 10:00 - 10:15 | * Break* |
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+ | 10:15 - 11:15 | Working with on-disk data formats (exercises, * M. Smith* ) |
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+ | 11:15 - 11:30 | * Break* |
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+ | 11:30 - 12:30 | Working with on-disk data formats (continued) |
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+ | 12:30 - 13:30 | * Lunch* |
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+ | 13:30 - 14:30 | Deep Generative Networks (presentation and exercises, * P. Papasaikas* ) |
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+ | 14:30 - 14:45 | * Break* |
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+ | 14:45 - 15:45 | Deep Generative Networks (continued) |
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+ | 15:45 - 16:00 | * Break* |
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+ | 16:00 - 17:00 | Deep Generative Networks (continued) |
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+ | 17:00 - 17:30 | Wrap-up (feedback form, slack workspace, all) |
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