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trialGui.m
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function handles = trialGui(varargin)
% TRIALGUI creates a gui for drawing ROI on two-phonton imaging
% movies.
if nargin > 1
error('Usage: neuRoiGui([mapSize]');
elseif nargin == 1
mapSize = varargin{1};
else
mapSize = [10,10];
end
screensize=get(0,'screensize');
if screensize(3)<=(600 + 750 + 50) && screensize(2)<=(300 + 950 + 75)
handles.mainFig = figure('Position',[10,10,950,650],'ToolBar', 'none');
else
handles.mainFig = figure('Position',[600,300,950,650]);
end
deleteDefaultFigureMenu(handles.mainFig);
handles.fileMenu = uimenu(handles.mainFig,'Text','File');
handles.saveRoiMenu = uimenu(handles.fileMenu,'Text',....
'Save ROIs','Accelerator','S');
handles.loadRoiMenu = uimenu(handles.fileMenu,'Text',...
'Load ROIs','Accelerator','L');
handles.importRoisFromImageJMenu = uimenu(handles.fileMenu,'Text',...
'Import ROIs from ImageJ','Accelerator','I');
handles.importRoisFromMaskMenu = uimenu(handles.fileMenu,'Text',...
'Import ROIs from Mask');
handles.mapMenu = uimenu(handles.mainFig,'Text','Map');
handles.importMapMenu = uimenu(handles.mapMenu,'Text',....
'Import map','Accelerator','I');
handles.roiMenu = uimenu(handles.mainFig,'Text','Rois');
handles.removeOverlapRoiMenu = uimenu(handles.roiMenu,'Text',....
'Remove overlap from rois','Accelerator','R');
handles.metaText = uicontrol('Style','text',...
'String','meta data',...
'Units','normal',...
'Position',[0.02 0.85 0.12 0.15],...
'BackgroundColor',[255,250,250]/255);
handles.mapAxes = axes('Position',[0.05 0.1 0.65 0.72]);
handles.mapImage = imagesc(zeros(mapSize),'Parent',handles.mapAxes);
handles.mapOptionText = uicontrol('Style','text',...
'String','map option',...
'Units','normal',...
'Position',[0.15 0.85 0.6 0.05],...
'BackgroundColor',[255,250,250]/255);
handles.mapButtonGroup= uibuttongroup('Position',[0.15,0.91,0.30,0.05]);
nMapButton = 6;
mb = {};
for i=1:nMapButton
mb{1} = createMapButton(handles.mapButtonGroup,i);
end
% Sync time trace checkbox
handles.syncTraceCheckbox = uicontrol('Style','checkbox',...
'String','sync time trace',...
'Units','normal',...
'Position',[0.5, 0.9, 0.2, 0.1]);
% Sliders for contrast adjustment
handles.contrastSliderGroup = uibuttongroup('Position',[0.7,0.9,0.25,0.1]);
handles.contrastMinSlider = uicontrol(handles.contrastSliderGroup,...
'Style','slider', ...
'Tag','contrastSlider_1',...
'Units','normal',...
'Position',[0 0.5 1 0.4]);
handles.contrastMaxSlider = uicontrol(handles.contrastSliderGroup,...
'Style','slider', ...
'Tag','contrastSlider_2',...
'Units','normal',...
'Position',[0 0 1 0.4]);
%
% handles.multiTrialButton= uicontrol("Style","checkbox",...
% "String",'Enable multi trial anatomy',...
% 'Units','normal',...
% 'Position',[0.71 0.79 0.16 0.03] )
handles.TrialNumberSlider = uicontrol('Style','slider', ...
'Tag','TrialNumberSlider',...
'Units','normal',...
'Position',[0 0 1 0.025],...
'Visible','off');
%Comment out JE 22.02.2023: get the roigroup out
% handles.roiGroupListboxText= uicontrol("Style","text",...
% "FontSize",12,...
% "String",'Roi groups',...
% 'Units','normal',...
% 'Position',[0.71 0.755 0.16 0.03] );
% handles.roiGroupListbox= uicontrol("Style","listbox",...
% 'Units','normal',...
% 'Position',[0.71 0.65 0.16 0.10] );
%
% handles.roiGroupColorButton= uicontrol("Style","pushbutton",...
% "BackgroundColor",'red',...
% 'Units','normal',...
% 'Position',[0.875 0.72 0.03 0.03] );
%
% handles.roiGroupAddButton= uicontrol("Style","pushbutton",...
% "FontSize",15,...
% "String",'+',...
% 'Units','normal',...
% 'Position',[0.875 0.685 0.03 0.03] );
% handles.roiGroupDeleteButton= uicontrol("Style","pushbutton",...
% "FontSize",15,...
% "String",'-',...
% 'Units','normal',...
% 'Position',[0.875 0.65 0.03 0.03] );
% handles.roiGroupSelectionCheckbox= uicontrol("Style","checkbox",...
% "String",'',...
% 'Units','normal',...
% 'Position',[0.95 0.72 0.03 0.03] );
% handles.roiGroupSelectionCheckboxText= uicontrol("Style","text",...
% "String",'Select group rois',...
% 'Units','normal',...
% 'Position',[0.91 0.69 0.09 0.03] );
handles.roiListboxText= uicontrol("Style","text",...
"FontSize",12,...
"String",'Roi list',...
'Units','normal',...
'Position',[0.71 0.79 0.16 0.03] );
handles.roiListbox= uicontrol("Style","listbox",...
'Units','normal',...
'Max',2,...
'Min',0,...
'Position',[0.71 0.1 0.16 0.68] );
% handles.roiListboxSelectionGroup= uicontrol("Style","popupmableu",...
% "String","test",...
% 'Units','normal',...
% 'Position',[0.88 0.55 0.11 0.03] );
% UIContextMenu for ROI
handles.roiMenu = uicontextmenu(handles.mainFig);
handles.roiMenuEntry1 = uimenu(handles.roiMenu,'Label','Move ROI(s)');
% Group for displaying ROI
handles.roiGroup = hggroup(handles.mapAxes,'Tag','roiGroup');
handles.traceFig = figure('Name','Time Trace','Tag','traceFig',...
'Position',[1350,500,500,400],'Visible','off');
handles.traceAxes = axes();
xlabel(handles.traceAxes,'Time (s)')
ylabel(handles.traceAxes,'dF/F')
figure(handles.mainFig)
end
function button = createMapButton(buttonGroup,ind)
position = [0.15*(ind-1),0,0.15,1];
tag = sprintf('mapButton_%d',ind);
button = uicontrol(buttonGroup,...
'Style','togglebutton',...
'Tag',tag,...
'String',num2str(ind),...
'Units','normal',...
'Position',position);
end
function deleteDefaultFigureMenu(fig)
set(0,'showhiddenhandles','on')
tagArray = {'figMenuHelp','figMenuWindow','figMenuDesktop','figMenuTools',...
'figMenuInsert','figMenuView','figMenuEdit','figMenuFile'};
for k=1:length(tagArray)
tag = tagArray{k};
hobj = findobj(fig,'Tag',tag);
delete(hobj)
end
set(0,'showhiddenhandles','off')
end