Solve warnings

Author: drisso

NAMESPACE

@@ -6,15 +6,12 @@ export(compute_wcss)
 export(mini_batch)
 export(predict_mini_batch)
 export(predict_mini_batch_r)
-exportClasses(MbkmeansParam)
 exportMethods(mbkmeans)
 import(ClusterR)
-import(methods)
 importClassesFrom(DelayedArray,DelayedMatrix)
 importClassesFrom(SingleCellExperiment,LinearEmbeddingMatrix)
 importClassesFrom(SingleCellExperiment,SingleCellExperiment)
 importClassesFrom(SummarizedExperiment,SummarizedExperiment)
-importClassesFrom(bluster,KmeansParam)
 importFrom(BiocParallel,SerialParam)
 importFrom(DelayedArray,blockApply)
 importFrom(DelayedArray,colAutoGrid)

R/AllClasses.R

@@ -1,19 +1,26 @@
 #' Mini-batch k-means clustering
 #'
 #' Run the mini-batch k-means \code{\link{mbkmeans}} function with the specified
-#' number of centers within \code{\link{clusterRows}} from the
-#' \code{\link{bluster}} Bioconductor package.
+#' number of centers within \code{\link[bluster]{clusterRows}} from the
+#' \code{bluster} Bioconductor package.
 #'
-#' This function is deprecated. Please use the \code{MbkmeansParam} function in
-#' the \code{\link{bluster}} Bioconductor package.
-#' @name MbkmeansParam-class
+#' This function is deprecated. Please use the \code{\link[bluster]{MbkmeansParam} function in
+#' the \code{bluster} Bioconductor package.
+#' 
+#' @param centers An integer scalar specifying the number of centers.
+#' Alternatively, a function that takes the number of observations and returns the number of centers. 
+#' Note, the \code{\link{mbkmeans}} function uses the argument \code{clusters} argument to represent this argument. 
+#' However, we use \code{centers} to match 
+#' @param ... Further arguments to pass to \code{\link{mbkmeans}}.
+#' 
+#' @name MbkmeansParam
 #' @docType class
 #' @aliases 
 #' show,MbkmeansParam-method
 NULL
 
 #' @export
-#' @rdname MbkmeansParam-class
+#' @rdname MbkmeansParam
 MbkmeansParam <- function(centers, ...) {
   .Deprecated("bluster::MbkmeansParam")
   bluster::MbkmeansParam(centers, ...)