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I've reported a while ago #1337 and #1338 related to wrongly calculating by a factor of 1000 or so the "skip overhead" or "run only once per iteration" for long-running benchmarks, leading to very wrong results because benchmarks are wrongly considered "long".
Not sure it's the same cause/result, but I've been trying to understand what was going on there for a while now and I assumed it had to do with JIT-time being accidentally taken into account for testing whether an op is "long-running".
I reported there that PR #760 included code that skips the pilot phase, but that code uses wrong assumptions (or it's caused by the bug you reported here. Which would be wonderful, as since #760 it's been virtually impossible to run BDN reliably on fast code that involves a lot of indirect JIT).
Source code
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