Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

problem with final results (hist_plot strange) #133

Open
pguenzi-tiberi opened this issue Oct 4, 2023 · 0 comments
Open

problem with final results (hist_plot strange) #133

pguenzi-tiberi opened this issue Oct 4, 2023 · 0 comments

Comments

@pguenzi-tiberi
Copy link

Hi everyone,

After several runs of purged dups, the hist_plot plot changed from this (first picture) to this (second picture). It's not perfect, but purged-dups can't remove other duplications.
PB
purged_final

But at the same time, the last Busco is better than the first one
First Busco (before purging) : C:93.5%[S:25.2%,D:68.3%],F:0.3%,M:6.2%,n:1519
Last Busco : C:95.2%[S:78.5%,D:16.7%],F:0.3%,M:4.5%,n:1519

What do you think of my results ? Is it OK for you ? Are the differents depth the results of real duplication and not the results of different haplotyps ?

Thanks !

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant