SUMMARY.md

Table of contents

• Home
• About Us
• List of RFCs
• User Guide
  • New Users
  • Frequently Asked Questions
  • Tutorials
  • Page Specific Resources
  • OQL
  • News
  • Genie News
• Web API and API Clients
• Deployment
  • Architecture overview
  • Hardware Requirements
  • Deploy with Docker (Recommended)
    • Import data with Docker
    • Example Commands
    • Authenticating and Authorizing Users using Keycloak in Docker
  • Deploy without Docker
    • Software Requirements
    • Pre-Build Steps
    • Building from Source
    • Importing the Seed Database
    • Deploying the Web Application
    • Loading a Sample Study
  • Standalone Deployment
  • Deploy with Kubernetes
  • Authorization and Authentication
    • Spring Security
    • User Authorization
    • Authenticating Users via SAML
    • Authenticating Users via LDAP
    • Authenticating and Authorizing Users via Keycloak
    • Authenticating Users via Tokens
    • Keycloak Management via API and User creation
  • Customization
    • Customizing your cBioPortal Instance via application.properties
    • More application.properties Settings
    • Security Properties Settings
    • Configuring Caching Behavior
    • How does the study view organize the charts
    • Utilize priority setting from database to visualize charts
  • Integration with Other Webservices
    • OncoKB Data Access
  • Data Loading Overview
    • Downloads
    • Using the Dataset Validator
    • Using the metaImport Script
    • File Formats
      • Z-Score Normalization
    • Study Curation Guide
    • Maintaining Studies
    • For Developers
    • Tips and Best Practices
    • Mutation Data Transcript Annotation
    • Import OncoKB annotations as custom driver annotations
    • Importing Gene Sets for Gene Set Scoring Data
    • Importing Gene Panels
    • Study View Customization with Priority Data
  • cBioPortal Maintenance
    • Updating your cBioPortal Database Scheme
    • Update genes and gene aliases
    • Migration Guide
    • MSK Maintenance
• Development
  • Feature Development Guide
  • cBioPortal Entity-relationship Diagram
  • cBioPortal Database Versioning
  • Backend Code Organization
  • Backend Development Guidelines
  • Build cBioPortal with a different frontend version
  • Session Service
  • Manual test cases
  • Release Procedure
  • Deployment Procedure
  • Security
  • This documentation site