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{
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- "schemas/bulker/cdid" : {
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- "project" : " bulker" ,
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- "url" : " bulker/cdid.yaml" ,
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- "description" : " Two druids that describe the manifest"
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- },
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- "schemas/bulker/cmdlist" : {
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- "project" : " bulker" ,
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- "url" : " bulker/cmdlist.yaml" ,
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- "description" : " A list of commands and the containers that run them."
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- },
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- "schemas/bulker/manifest" : {
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- "project" : " bulker" ,
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- "url" : " bulker/manifest.yaml" ,
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- "description" : " Schema for bulker manifest"
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- },
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- "schemas/bulker/importlist" : {
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- "project" : " bulker" ,
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- "url" : " bulker/importlist.yaml" ,
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- "description" : " A priority list of bulker manifests that are imported."
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+ "schemas/refget/annotated_collection_digest" : {
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+ "project" : " refget" ,
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+ "url" : " refget/annotated_collection_digest.yaml" ,
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+ "description" : " Schema for an Annotated Collection Digest; this is analogous to a single fasta file with metadata."
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},
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"schemas/refget/SeqColArraySetInherent" : {
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"project" : " refget" ,
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"url" : " refget/sequence.yaml" ,
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"description" : " Schema for a single raw sequence"
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},
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- "schemas/refget/annotated_collection_digest " : {
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+ "schemas/refget/RawSeqCol " : {
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"project" : " refget" ,
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- "url" : " refget/annotated_collection_digest .yaml" ,
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- "description" : " Schema for an Annotated Collection Digest; this is analogous to a single fasta file with metadata. "
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+ "url" : " refget/RawSeqCol .yaml" ,
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+ "description" : " Schema for List of ASDs "
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},
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- "schemas/refget/ArrayedNestedSequenceCollection " : {
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+ "schemas/refget/AnnotatedArrayedSequenceCollection " : {
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"project" : " refget" ,
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- "url" : " refget/ArrayedNestedSequenceCollection .yaml" ,
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+ "url" : " refget/AnnotatedArrayedSequenceCollection .yaml" ,
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"description" : " A collection of sequences"
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},
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- "schemas/refget/ASDList" : {
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- "project" : " refget" ,
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- "url" : " refget/ASDList.yaml" ,
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- "description" : " Schema for List of ASDs"
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- },
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- "schemas/refget/annotated_sequence_digest" : {
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+ "schemas/refget/SeqColArraySet" : {
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"project" : " refget" ,
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- "url" : " refget/annotated_sequence_digest .yaml" ,
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- "description" : " Schema for an Annotated Sequence Digest; a digested Sequence plus metadata "
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+ "url" : " refget/SeqColArraySet .yaml" ,
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+ "description" : " SeqColArraySet "
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},
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"schemas/refget/ACDList" : {
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"project" : " refget" ,
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"url" : " refget/ACDList.yaml" ,
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"description" : " Schema for a list of ACDs; analogous to a collection of fasta files"
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},
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- "schemas/refget/ArrayedSequenceCollection" : {
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- "project" : " refget" ,
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- "url" : " refget/ArrayedSequenceCollection.yaml" ,
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- "description" : " A collection of sequences"
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- },
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- "schemas/refget/RawSeqCol" : {
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- "project" : " refget" ,
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- "url" : " refget/RawSeqCol.yaml" ,
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- "description" : " Schema for List of ASDs"
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- },
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"schemas/refget/TASeqCol" : {
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"project" : " refget" ,
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"url" : " refget/TASeqCol.yaml" ,
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"description" : " TAseqcol"
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},
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- "schemas/refget/CustomAnnotatedArrayedSequenceCollection " : {
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+ "schemas/refget/ArrayedNestedSequenceCollection " : {
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"project" : " refget" ,
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- "url" : " refget/CustomAnnotatedArrayedSequenceCollection .yaml" ,
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+ "url" : " refget/ArrayedNestedSequenceCollection .yaml" ,
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"description" : " A collection of sequences"
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},
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- "schemas/refget/SeqColArraySet " : {
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+ "schemas/refget/CustomAnnotatedArrayedSequenceCollection " : {
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"project" : " refget" ,
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- "url" : " refget/SeqColArraySet .yaml" ,
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- "description" : " SeqColArraySet "
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+ "url" : " refget/CustomAnnotatedArrayedSequenceCollection .yaml" ,
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+ "description" : " A collection of sequences "
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},
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- "schemas/refget/AnnotatedArrayedSequenceCollection " : {
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+ "schemas/refget/annotated_sequence_digest " : {
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"project" : " refget" ,
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- "url" : " refget/AnnotatedArrayedSequenceCollection .yaml" ,
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- "description" : " A collection of sequences "
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+ "url" : " refget/annotated_sequence_digest .yaml" ,
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+ "description" : " Schema for an Annotated Sequence Digest; a digested Sequence plus metadata "
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},
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"schemas/refget/AnnotatedSequenceList" : {
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"project" : " refget" ,
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"url" : " refget/AnnotatedSequenceList.yaml" ,
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"description" : " Schema for List of ASDs"
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},
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+ "schemas/refget/ASDList" : {
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+ "project" : " refget" ,
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+ "url" : " refget/ASDList.yaml" ,
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+ "description" : " Schema for List of ASDs"
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+ },
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+ "schemas/refget/ArrayedSequenceCollection" : {
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+ "project" : " refget" ,
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+ "url" : " refget/ArrayedSequenceCollection.yaml" ,
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+ "description" : " A collection of sequences"
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+ },
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+ "schemas/bulker/manifest" : {
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+ "project" : " bulker" ,
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+ "url" : " bulker/manifest.yaml" ,
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+ "description" : " Schema for bulker manifest"
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+ },
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+ "schemas/bulker/cmdlist" : {
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+ "project" : " bulker" ,
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+ "url" : " bulker/cmdlist.yaml" ,
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+ "description" : " A list of commands and the containers that run them."
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+ },
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+ "schemas/bulker/importlist" : {
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+ "project" : " bulker" ,
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+ "url" : " bulker/importlist.yaml" ,
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+ "description" : " A priority list of bulker manifests that are imported."
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+ },
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+ "schemas/bulker/cdid" : {
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+ "project" : " bulker" ,
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+ "url" : " bulker/cdid.yaml" ,
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+ "description" : " Two druids that describe the manifest"
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+ },
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"schemas/refgenie/refgenie_build" : {
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"project" : " refgenie" ,
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"url" : " refgenie/refgenie_build.yaml" ,
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"url" : " pep/2.0.0.yaml" ,
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"description" : " Schema for a minimal PEP"
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},
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+ "schemas/pipelines/bedbuncher" : {
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+ "project" : " pipelines" ,
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+ "url" : " pipelines/bedbuncher.yaml" ,
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+ "description" : " bedbuncher PEP schema"
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+ },
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"schemas/pipelines/pipeline_interface" : {
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"project" : " pipelines" ,
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"url" : " pipelines/pipeline_interface.yaml" ,
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"url" : " pipelines/geofetch_sra_convert.yaml" ,
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"description" : " A PEP for converting SRA files into fastq or bam format."
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},
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- "schemas/pipelines/bedmaker" : {
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- "project" : " pipelines" ,
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- "url" : " pipelines/bedmaker.yaml" ,
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- "description" : " bedmaker PEP schema"
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- },
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- "schemas/pipelines/bedbuncher" : {
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+ "schemas/pipelines/bedboss" : {
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"project" : " pipelines" ,
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- "url" : " pipelines/bedbuncher .yaml" ,
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- "description" : " bedbuncher PEP schema"
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+ "url" : " pipelines/bedboss .yaml" ,
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+ "description" : " bedboss run-all pep schema"
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},
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- "schemas/pipelines/pepatac " : {
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+ "schemas/pipelines/bedstat " : {
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"project" : " pipelines" ,
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- "url" : " pipelines/pepatac .yaml" ,
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- "description" : " A PEP for ATAC-seq samples for the PEPATAC pipeline. "
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+ "url" : " pipelines/bedstat .yaml" ,
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+ "description" : " bedstat PEP schema "
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},
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"schemas/pipelines/ProseqPEP" : {
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"project" : " pipelines" ,
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"url" : " pipelines/ProseqPEP.yaml" ,
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"description" : " A PEP for nascent RNA samples for the PEPPRO pipeline."
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},
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- "schemas/pipelines/bedstat " : {
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+ "schemas/pipelines/bedmaker " : {
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"project" : " pipelines" ,
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- "url" : " pipelines/bedstat .yaml" ,
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- "description" : " bedstat PEP schema"
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+ "url" : " pipelines/bedmaker .yaml" ,
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+ "description" : " bedmaker PEP schema"
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},
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- "schemas/pipelines/bedboss " : {
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+ "schemas/pipelines/pepatac " : {
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"project" : " pipelines" ,
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- "url" : " pipelines/bedboss .yaml" ,
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- "description" : " bedboss run-all pep schema "
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+ "url" : " pipelines/pepatac .yaml" ,
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+ "description" : " A PEP for ATAC-seq samples for the PEPATAC pipeline. "
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}
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}
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