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Add NEWS to #33
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NEWS.Rmd

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## Bugfixes and changes
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* dummy
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* Drop dependency to deprecated package `'ArchaeoPhases'` and make corresponding
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code an internal function (PR #33, @nfrerebeau)

NEWS.md

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<!-- NEWS.md was auto-generated by NEWS.Rmd. Please DO NOT edit by hand!-->
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# BayLum 0.3.1 (2023-03-28)
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# BayLum 0.3.2.9000-1 (2023-06-03)
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**This version of `'BayLum'` requires R\>=4.1.x!**
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## Bugfixes and changes
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- `AgeS_Computation()` & `Age_OSLC14()` had two instances of the
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MCMC-list. One has been removed. This essentially halves the amount of
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memory needed to store the output of these functions. (Thanks to G.
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Guérin for reporting) (#27)
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- `AgeS_Computation()` crashed reproducibly, if the THETA matrix (as one
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possibility) was provided indeed as a file name instead of a `matrix`
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object; fixed (thanks to M. Heydari for reporting)
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- `AgeS_Computation()` the function handles wrong user input for the
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Theta matrix more friendly by converting it automatically to a matrix
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if needed.
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- `create_ThetaMatrix()` the function did not throw an error in all
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cases where `sigma_s` was obviously wrong; fixed (thanks to M. Heydari
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for reporting)
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- `Generate_DataFile_MG()` the function now checks that the number of
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specified BIN/BINX-files matches the actual number of BIN/BINX-files
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present in the folders. If not, a warning is prompted. This prevents
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hard-to-track-down error messages and odd modelling results that
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erroneously encourage searching for problems with JAGS or the
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`'BayLum'` models.
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- `plot_Ages()` gained a couple of new arguments. First, `plot_mode`
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allows to switch between the standard plot output `"ages"` (the
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default) and the new option `"density"`. The latter draws probability
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density curves instead of lines. Further arguments specific to the
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`plot_mode = "density"` are `d_scale` to scale the density plots in
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height and `show_ages` to show the Bayes estimator. More generally,
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`legend.cex` was added to enable a convenient scaling of the legend
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fonts; this works for both plot modes.
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- `plot_MCMC()` gained additional support for `BayLum.list` returned by
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`Age_OSLC14()`
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- `plot_Scatterplots()` The functions can now handle `BayLum.list`
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objects if returned by certain functions. Currently:
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`AgesS_Computation()`, `Age_OSLC14()`
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- Drop dependency to deprecated package `'ArchaeoPhases'` and make
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corresponding code an internal function (PR \#33, @nfrerebeau)

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