main.ipynb

{
  "cells": [
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "9CwaW0b0CZoU"
      },
      "source": [
        "<font face=\"B Mitra\" size=4>\n",
        "<div dir=rtl align=center>\n",
        "<br>\n",
        "<img src=\"https://aut.ac.ir/templates/tmpl_modern01/images/logo_fa.png\" alt=\"Amirkabir University Logo\" width=\"100\">\n",
        "<br>\n",
        "<font size=6>\n",
        "<b>پروژه سوم داده کاوی</b>\n",
        "<br>\n",
        "<b><font size=5> استاد درس: دکتر فاطمه شاکری</b>\n",
        "<hr>\n",
        "</div>\n",
        "</font>"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "imKU8ry_DIVS"
      },
      "source": [
        "<font face=\"B Mitra\">\n",
        "<div dir=rtl>\n",
        "<font size=5>\n",
        "کتابخانه های موردنیاز را در این بخش بارگذاری کنید.\n",
        "</p>\n",
        "</font>\n",
        "</div>\n",
        "</font>"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": null,
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "id": "wqiVDGR55Wfk",
        "outputId": "bd2902ee-ab7b-4b75-8cbe-99d8e913a86a"
      },
      "outputs": [
        {
          "name": "stdout",
          "output_type": "stream",
          "text": [
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            "Collecting https://s3-us-west-2.amazonaws.com/ai2-s2-scispacy/releases/v0.5.4/en_core_sci_lg-0.5.4.tar.gz\n",
            "  Using cached https://s3-us-west-2.amazonaws.com/ai2-s2-scispacy/releases/v0.5.4/en_core_sci_lg-0.5.4.tar.gz (531.2 MB)\n",
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          ]
        }
      ],
      "source": [
        "!pip install langdetect\n",
        "!pip install scispacy\n",
        "!pip install https://s3-us-west-2.amazonaws.com/ai2-s2-scispacy/releases/v0.5.4/en_core_sci_lg-0.5.4.tar.gz"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "Z08MXPBzY_09"
      },
      "source": [
        "<font face=\"B Mitra\">\n",
        "<div dir=rtl>\n",
        "<font size=5>\n",
        "نصب پکیج <code>spacy</code> ممکن است وابسته به سیستم‌عامل و پکیج‌منیجر شما نیاز به دستوری متفاوت داشته‌باشد. دستور مناسب را می‌تواند با استفاده از\n",
        "<a href=\"https://spacy.io/usage\">این لینک</a> بیابید.\n",
        "</p>\n",
        "</font>\n",
        "</div>\n",
        "</font>"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 1,
      "metadata": {
        "id": "gOBs4vhPSeag"
      },
      "outputs": [],
      "source": [
        "import spacy\n",
        "import numpy as np\n",
        "import pandas as pd\n",
        "from langdetect import detect, DetectorFactory\n",
        "from langdetect.lang_detect_exception import LangDetectException"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 2,
      "metadata": {
        "id": "hF_lqFaDUMGY"
      },
      "outputs": [],
      "source": [
        "# Plotting and visualization\n",
        "import matplotlib.pyplot as plt\n",
        "plt.style.use('ggplot')\n",
        "%config InlineBackend.figure_formats = ['svg']\n",
        "import seaborn as sns\n",
        "\n",
        "# Used to draw a progress bar for longer method calls\n",
        "from tqdm import tqdm\n",
        "\n",
        "# Used to detect language used in each document\n",
        "from langdetect import detect\n",
        "from langdetect import DetectorFactory\n",
        "DetectorFactory.seed = 0\n",
        "\n",
        "# Pre-trained natural language processing pipeline for biomedical use\n",
        "import spacy\n",
        "from spacy.lang.en.stop_words import STOP_WORDS\n",
        "import en_core_sci_lg\n",
        "\n",
        "# Used to import list of punctuations\n",
        "import string\n",
        "\n",
        "# Feature extraction (text vectorizers)\n",
        "from sklearn.feature_extraction.text import TfidfVectorizer\n",
        "from sklearn.feature_extraction.text import CountVectorizer\n",
        "\n",
        "# Dimensionality reduction\n",
        "from sklearn.decomposition import PCA\n",
        "from sklearn.manifold import TSNE\n",
        "\n",
        "# Clustering and evaluation\n",
        "from sklearn.cluster import KMeans\n",
        "from sklearn import metrics\n",
        "from scipy.spatial.distance import cdist\n",
        "\n",
        "# Topic modeling\n",
        "from sklearn.decomposition import LatentDirichletAllocation"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "Srip_iHlUMGb"
      },
      "source": [
        "<font face=\"B Mitra\">\n",
        "<div dir=rtl>\n",
        "<font size=6>\n",
        "<b> لود کردن مجموعه داده </b>\n",
        "<br>\n",
        "<p align=\"justify\">\n",
        "<font size=5>\n",
        "فایل مجموعه داده در <a href=\"https://drive.google.com/file/d/15E8FLX0C-6qpK-lDBEQJXw00Lsdcvjae/view?usp=sharing\">گوگل درایو</a> در اختیار شما قرار گرفته است:\n",
        "<br>\n",
        "همچنین در صورت استفاده از گوگل کولب با استفاده از دستور زیر میتوانید مجموعه داده را از گوگل درایو در نوتبوک خود دانلود کنید.\n",
        "</p>\n",
        "</font>\n",
        "</div>\n",
        "</font>"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "mY9evTyRQA82"
      },
      "source": [
        "!gdown 15E8FLX0C-6qpK-lDBEQJXw00Lsdcvjae"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": null,
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "id": "U25z3nw497w6",
        "outputId": "17daa483-ddb5-42d8-c463-5ba50acfe0ce"
      },
      "outputs": [
        {
          "name": "stdout",
          "output_type": "stream",
          "text": [
            "Downloading...\n",
            "From (original): https://drive.google.com/uc?id=15E8FLX0C-6qpK-lDBEQJXw00Lsdcvjae\n",
            "From (redirected): https://drive.google.com/uc?id=15E8FLX0C-6qpK-lDBEQJXw00Lsdcvjae&confirm=t&uuid=0ba7b6d6-e753-4fd8-96b6-afc9b32cae17\n",
            "To: /content/10k_df.csv\n",
            "100% 341M/341M [00:03<00:00, 90.0MB/s]\n"
          ]
        }
      ],
      "source": [
        "!gdown 15E8FLX0C-6qpK-lDBEQJXw00Lsdcvjae"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "ur5VMzf4QD92"
      },
      "source": [
        "<font face=\"B Mitra\">\n",
        "<div dir=rtl>\n",
        "<font size=5>\n",
        "در شروع کار،دیتافریم موردنظر خود را ایجاد کردیم و مقادیر خالی را با space جایگزین کردیم.\n",
        "دلیل این کار جلوگیری از خطا در مصورسازی انتهایی است.<br>\n",
        "سپس با توجه به زمانبر بودن اجرا،حداقل یک سمپل 1500 تایی نمونه برداری کردیم.\n",
        "<br>\n",
        "برای کسب نتایج بهتر و مصورسازی مناسبتر میتوانیم تعداد سمپل را افزایش دهیم.\n",
        "</p>\n",
        "</font>\n",
        "</div>"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 3,
      "metadata": {
        "id": "mG_ng9hsUMGc"
      },
      "outputs": [],
      "source": [
        "df_10k = pd.read_csv('10k_df.csv')"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 4,
      "metadata": {
        "id": "CppfUdF3Zyp8"
      },
      "outputs": [],
      "source": [
        "df_10k.fillna(value=\" \",inplace=True)"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 5,
      "metadata": {
        "id": "ehfaa_-eUMGd"
      },
      "outputs": [],
      "source": [
        "df = df_10k.sample(1500, random_state=42)\n",
        "del df_10k"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "BSr5HP2wUMGg"
      },
      "source": [
        "<font face=\"B Mitra\">\n",
        "<div dir=rtl>\n",
        "<font size=6>\n",
        "<b> پیش پردازش متن</b>\n",
        "<br>\n",
        "<p align=\"justify\">\n",
        "<font size=5>\n",
        " برای پیش پردازش متون از کتابخانه های مختلفی از جمله NLTK ،Gensim یا Spacy میتوان استفاده کرد.\n",
        " <br>\n",
        " مواردی که در پیش پردازش متون باید به آن توجه کرد.\n",
        " <ol>\n",
        " <br>\n",
        " <li> <b>تشخیص زبان مورداستفاده مقاله ها:</b>\n",
        "  در این مجموعه داده میتوانید  با استفاده از کتابخانه langdetect زبان مورد استفاده مقاله را در ویژگی <code>body_text</code> بررسی کنید.\n",
        " با توجه به نتیجه نهایی خواهید دید که زبان انگلیسی زبان غالب در این مقاله هاست بنابراین میتوان مقاله های غیر انگلیسی را حذف کرد.\n",
        " </li>\n",
        " <li> <b>توکنایز کردن (Tokenize) مدل ها:</b>\n",
        " در این مجموعه داده از  پایپ لاین  <code>en_core_sci_lg</code> از کتابخانه  spaCy به دلیلی پشتبانی از داده های زیستی و پزشکی و با بردارهای 600 هزار کلمه ای و واژگان بزرگتر میتوانیم استفاده کنیم.<br>\n",
        " به دلیل اینکه SpaCy حداکثر یک میلیون کاراکتر را بررسی میکند میتوان با استفاده از max_length این محدودیت را کاهش داد:\n",
        " لطفا از parser مشخص شده در بخش زیر برای توکنایز کردن متن خود استفاده کنید.\n",
        "\n",
        "\n",
        " </li>\n",
        " <li> <b> Lemmatization یا Stemming (ریشه یابی) </b>\n",
        " </li>\n",
        " <li> <b>حذف Stopwords</b> </li>\n",
        " <li> <b>حذف علائم نشانه گذاری</b> </li>\n",
        " </ol>\n",
        "<br>\n",
        "درمورد هر یک از موارد بالا جستجو کنید و پیش پردازش های لازم را برای ویژگی \"body text\" مقاله انجام دهید.\n",
        "</p>\n",
        "</font>\n",
        "</div>\n",
        "</font>"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "oCWxIbp_ZRnX"
      },
      "source": [
        "<div dir=rtl>\n",
        "\n",
        "<font color='yellow'>\n",
        "کد زیر وظیفه شناسایی زبان مقالات موجود در یک\n",
        " DataFrame و حذف\n",
        "مقالاتی که به زبان انگلیسی نیستند را انجام می‌دهد.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "این خط کد، مقدار بذر (seed) را برای تولید اعداد تصادفی در کتابخانه تشخیص زبان `langdetect` تنظیم می‌کند. تنظیم بذر باعث می‌شود که نتایج تشخیص زبان در اجرای‌های مختلف یکسان باشند.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        " تابع `detect_language` برای شناسایی زبان متن ورودی (پارامتر `text`) استفاده می‌شود. در صورت بروز خطا (به عنوان مثال، در صورتی که متن قابل تشخیص نباشد)، مقدار \"unknown\" برگردانده می‌شود.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "در این خط، ستون جدیدی به نام `language` به DataFrame `df` اضافه می‌شود. برای هر ردیف از DataFrame، تابع `detect_language` بر روی ستون `body_text` اعمال می‌شود و زبان متن شناسایی شده در ستون جدید `language` قرار می‌گیرد.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "در نهایت، این خط مقالاتی که زبان آن‌ها انگلیسی نیست را حذف می‌کند و فقط مقالاتی که زبان آن‌ها \"en\" (انگلیسی) است، باقی می‌مانند.\n",
        "\n",
        "</div>"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 6,
      "metadata": {
        "id": "DRzasqy0_4EI"
      },
      "outputs": [],
      "source": [
        "# تثبیت تصادفی برای تکرارپذیری نتایج\n",
        "DetectorFactory.seed = 0\n",
        "\n",
        "# تابعی برای شناسایی زبان متن\n",
        "def detect_language(text):\n",
        "    try:\n",
        "        return detect(text)\n",
        "    except LangDetectException:\n",
        "        return \"unknown\"\n",
        "\n",
        "# شناسایی زبان هر مقاله و اضافه کردن آن به یک ستون جدید\n",
        "df['language'] = df['body_text'].apply(detect_language)\n",
        "\n",
        "# حذف مقالاتی که زبان آن‌ها انگلیسی نیست\n",
        "df = df[df['language'] == 'en']"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 7,
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/",
          "height": 909
        },
        "id": "KFKzhKp3mriH",
        "outputId": "8515ac64-e7aa-48be-af66-21aa3f54ec99"
      },
      "outputs": [
        {
          "data": {
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              "<table border=\"1\" class=\"dataframe\">\n",
              "  <thead>\n",
              "    <tr style=\"text-align: right;\">\n",
              "      <th></th>\n",
              "      <th>paper_id</th>\n",
              "      <th>doi</th>\n",
              "      <th>abstract</th>\n",
              "      <th>body_text</th>\n",
              "      <th>authors</th>\n",
              "      <th>title</th>\n",
              "      <th>journal</th>\n",
              "      <th>abstract_summary</th>\n",
              "      <th>language</th>\n",
              "    </tr>\n",
              "  </thead>\n",
              "  <tbody>\n",
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              "      <th>6252</th>\n",
              "      <td>fefd6cdcddcb00d1ba2ef1a0d3bba9f312010a1d</td>\n",
              "      <td>10.1111/j.1524-4733.2008.00379.x</td>\n",
              "      <td></td>\n",
              "      <td>China is the biggest country in the world that...</td>\n",
              "      <td>Li, Youing.  Sun, Xin.  Wang, Li</td>\n",
              "      <td>Evidence-Based Medicine in China</td>\n",
              "      <td>Value in Health</td>\n",
              "      <td>Not provided.</td>\n",
              "      <td>en</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>4684</th>\n",
              "      <td>2a3d080d5dcf6771db002366691f35e5d6f0e493</td>\n",
              "      <td>10.1007/s13238-010-0029-7</td>\n",
              "      <td></td>\n",
              "      <td>✉ Correspondence: zlshi@wh.iov.cn Bat, the onl...</td>\n",
              "      <td>Shi, Zhengli</td>\n",
              "      <td>Bat and virus</td>\n",
              "      <td>Protein &amp; Cell</td>\n",
              "      <td>Not provided.</td>\n",
              "      <td>en</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1731</th>\n",
              "      <td>2de657aabab331e75657bfc1443542fd345b6f26</td>\n",
              "      <td>10.1016/j.ccc.2019.06.001</td>\n",
              "      <td>KEYWORDS\\nPandemic Influenza Disaster prepared...</td>\n",
              "      <td>Outbreaks of infectious disease pose unique ch...</td>\n",
              "      <td>Maves, Ryan C..  Jamros, Christina M..  Smith...</td>\n",
              "      <td>Intensive Care Unit Preparedness During&lt;br&gt;Pa...</td>\n",
              "      <td>Crit Care Clin</td>\n",
              "      <td>KEYWORDS\\nPandemic Influenza Disaster&lt;br&gt;prep...</td>\n",
              "      <td>en</td>\n",
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              "    <tr>\n",
              "      <th>4742</th>\n",
              "      <td>bc22758234283f024f16e2dbe660bc909b512b92</td>\n",
              "      <td>10.1016/j.vetpar.2007.11.020</td>\n",
              "      <td>Cryptosporidium parvum is recognized as one of...</td>\n",
              "      <td>Diarrhoeal diseases of infectious aethiology r...</td>\n",
              "      <td>Klein, Pavel.  Kleinová, Tereza.  Volek,&lt;br&gt;Z...</td>\n",
              "      <td>Effect of Cryptosporidium parvum infection on...</td>\n",
              "      <td>Veterinary Parasitology</td>\n",
              "      <td>Cryptosporidium parvum is recognized as one o...</td>\n",
              "      <td>en</td>\n",
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              "    <tr>\n",
              "      <th>4521</th>\n",
              "      <td>a204aafa38365dbcc0a26af3ca2c6d3313d7fab2</td>\n",
              "      <td>10.1111/irv.12518</td>\n",
              "      <td>, Brazil, in the period of Background: The res...</td>\n",
              "      <td>The inclusion criteria for asymptomatic adults...</td>\n",
              "      <td>Moreira, Luciana Peniche.  Watanabe, Aripuana...</td>\n",
              "      <td>Respiratory syncytial virus evaluation among&lt;...</td>\n",
              "      <td>Influenza Other Respir Viruses</td>\n",
              "      <td>, Brazil, in the period of Background: The&lt;br...</td>\n",
              "      <td>en</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>...</th>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>967</th>\n",
              "      <td>e021d75c9a2c8f02f80ccfbad4133b15d1777576</td>\n",
              "      <td>10.1038/sj.eye.6701885</td>\n",
              "      <td>Many new infectious diseases in humans have be...</td>\n",
              "      <td>Severe acute respiratory syndrome (SARS) is th...</td>\n",
              "      <td>Chan, W-M.  Liu, D T L.  Chan, P K S.  Chong,...</td>\n",
              "      <td>Precautions in ophthalmic practice in a&lt;br&gt;ho...</td>\n",
              "      <td>Eye (Lond)</td>\n",
              "      <td>Many new infectious diseases in humans have&lt;b...</td>\n",
              "      <td>en</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>6043</th>\n",
              "      <td>24beb94c313a07be6b0c745a6ca8a3d810618506</td>\n",
              "      <td></td>\n",
              "      <td>The Middle East respiratory syndrome coronavir...</td>\n",
              "      <td>The Middle East respiratory syndrome (MERS) is...</td>\n",
              "      <td>Ozharovskaia, T. A..  Zubkova, O. V.. &lt;br&gt;Dol...</td>\n",
              "      <td>Immunogenicity of Different Forms of Middle&lt;b...</td>\n",
              "      <td>Acta Naturae</td>\n",
              "      <td>The Middle East respiratory syndrome&lt;br&gt;coron...</td>\n",
              "      <td>en</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>6879</th>\n",
              "      <td>94475eaa419b11d7edf53c2fe4e423acef0ce881</td>\n",
              "      <td>10.12688/wellcomeopenres.15718.1</td>\n",
              "      <td>The current novel coronavirus outbreak appears...</td>\n",
              "      <td>The ongoing outbreak of novel Coronavirus appe...</td>\n",
              "      <td>Abbott, Sam.  Hellewell, Joel.  Munday, James...</td>\n",
              "      <td>The transmissibility of novel Coronavirus in&lt;...</td>\n",
              "      <td>Wellcome Open Res</td>\n",
              "      <td>The current novel coronavirus outbreak&lt;br&gt;app...</td>\n",
              "      <td>en</td>\n",
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              "    <tr>\n",
              "      <th>6775</th>\n",
              "      <td>a6ab8b27158a48683b4fa6d081614cde9087cc5e</td>\n",
              "      <td>10.1016/j.bja.2020.05.002</td>\n",
              "      <td></td>\n",
              "      <td>Editor -The critical shortage of medical suppl...</td>\n",
              "      <td>Lang, Angela L..  Shaw, Kendrick M..  Lozano,...</td>\n",
              "      <td>Effectiveness of a negative-pressure patient&lt;...</td>\n",
              "      <td>Br. j. anaesth</td>\n",
              "      <td>Not provided.</td>\n",
              "      <td>en</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>3295</th>\n",
              "      <td>a3ef5e2ffb31783af550c32f7512c0330ab9bc93</td>\n",
              "      <td>10.3201/eid1602.090780</td>\n",
              "      <td></td>\n",
              "      <td>To determine the epidemiologic and clinical fe...</td>\n",
              "      <td>Field, Hume.  Schaaf, Kylie.  Kung, Nina.  Si...</td>\n",
              "      <td>Hendra Virus Outbreak with Novel Clinical&lt;br&gt;...</td>\n",
              "      <td>Emerg Infect Dis</td>\n",
              "      <td>Not provided.</td>\n",
              "      <td>en</td>\n",
              "    </tr>\n",
              "  </tbody>\n",
              "</table>\n",
              "<p>1454 rows × 9 columns</p>\n",
              "</div>"
            ],
            "text/plain": [
              "                                      paper_id  \\\n",
              "6252  fefd6cdcddcb00d1ba2ef1a0d3bba9f312010a1d   \n",
              "4684  2a3d080d5dcf6771db002366691f35e5d6f0e493   \n",
              "1731  2de657aabab331e75657bfc1443542fd345b6f26   \n",
              "4742  bc22758234283f024f16e2dbe660bc909b512b92   \n",
              "4521  a204aafa38365dbcc0a26af3ca2c6d3313d7fab2   \n",
              "...                                        ...   \n",
              "967   e021d75c9a2c8f02f80ccfbad4133b15d1777576   \n",
              "6043  24beb94c313a07be6b0c745a6ca8a3d810618506   \n",
              "6879  94475eaa419b11d7edf53c2fe4e423acef0ce881   \n",
              "6775  a6ab8b27158a48683b4fa6d081614cde9087cc5e   \n",
              "3295  a3ef5e2ffb31783af550c32f7512c0330ab9bc93   \n",
              "\n",
              "                                   doi  \\\n",
              "6252  10.1111/j.1524-4733.2008.00379.x   \n",
              "4684         10.1007/s13238-010-0029-7   \n",
              "1731         10.1016/j.ccc.2019.06.001   \n",
              "4742      10.1016/j.vetpar.2007.11.020   \n",
              "4521                 10.1111/irv.12518   \n",
              "...                                ...   \n",
              "967             10.1038/sj.eye.6701885   \n",
              "6043                                     \n",
              "6879  10.12688/wellcomeopenres.15718.1   \n",
              "6775         10.1016/j.bja.2020.05.002   \n",
              "3295            10.3201/eid1602.090780   \n",
              "\n",
              "                                               abstract  \\\n",
              "6252                                                      \n",
              "4684                                                      \n",
              "1731  KEYWORDS\\nPandemic Influenza Disaster prepared...   \n",
              "4742  Cryptosporidium parvum is recognized as one of...   \n",
              "4521  , Brazil, in the period of Background: The res...   \n",
              "...                                                 ...   \n",
              "967   Many new infectious diseases in humans have be...   \n",
              "6043  The Middle East respiratory syndrome coronavir...   \n",
              "6879  The current novel coronavirus outbreak appears...   \n",
              "6775                                                      \n",
              "3295                                                      \n",
              "\n",
              "                                              body_text  \\\n",
              "6252  China is the biggest country in the world that...   \n",
              "4684  ✉ Correspondence: zlshi@wh.iov.cn Bat, the onl...   \n",
              "1731  Outbreaks of infectious disease pose unique ch...   \n",
              "4742  Diarrhoeal diseases of infectious aethiology r...   \n",
              "4521  The inclusion criteria for asymptomatic adults...   \n",
              "...                                                 ...   \n",
              "967   Severe acute respiratory syndrome (SARS) is th...   \n",
              "6043  The Middle East respiratory syndrome (MERS) is...   \n",
              "6879  The ongoing outbreak of novel Coronavirus appe...   \n",
              "6775  Editor -The critical shortage of medical suppl...   \n",
              "3295  To determine the epidemiologic and clinical fe...   \n",
              "\n",
              "                                                authors  \\\n",
              "6252                   Li, Youing.  Sun, Xin.  Wang, Li   \n",
              "4684                                       Shi, Zhengli   \n",
              "1731   Maves, Ryan C..  Jamros, Christina M..  Smith...   \n",
              "4742   Klein, Pavel.  Kleinová, Tereza.  Volek,<br>Z...   \n",
              "4521   Moreira, Luciana Peniche.  Watanabe, Aripuana...   \n",
              "...                                                 ...   \n",
              "967    Chan, W-M.  Liu, D T L.  Chan, P K S.  Chong,...   \n",
              "6043   Ozharovskaia, T. A..  Zubkova, O. V.. <br>Dol...   \n",
              "6879   Abbott, Sam.  Hellewell, Joel.  Munday, James...   \n",
              "6775   Lang, Angela L..  Shaw, Kendrick M..  Lozano,...   \n",
              "3295   Field, Hume.  Schaaf, Kylie.  Kung, Nina.  Si...   \n",
              "\n",
              "                                                  title  \\\n",
              "6252                   Evidence-Based Medicine in China   \n",
              "4684                                      Bat and virus   \n",
              "1731   Intensive Care Unit Preparedness During<br>Pa...   \n",
              "4742   Effect of Cryptosporidium parvum infection on...   \n",
              "4521   Respiratory syncytial virus evaluation among<...   \n",
              "...                                                 ...   \n",
              "967    Precautions in ophthalmic practice in a<br>ho...   \n",
              "6043   Immunogenicity of Different Forms of Middle<b...   \n",
              "6879   The transmissibility of novel Coronavirus in<...   \n",
              "6775   Effectiveness of a negative-pressure patient<...   \n",
              "3295   Hendra Virus Outbreak with Novel Clinical<br>...   \n",
              "\n",
              "                             journal  \\\n",
              "6252                 Value in Health   \n",
              "4684                  Protein & Cell   \n",
              "1731                  Crit Care Clin   \n",
              "4742         Veterinary Parasitology   \n",
              "4521  Influenza Other Respir Viruses   \n",
              "...                              ...   \n",
              "967                       Eye (Lond)   \n",
              "6043                    Acta Naturae   \n",
              "6879               Wellcome Open Res   \n",
              "6775                  Br. j. anaesth   \n",
              "3295                Emerg Infect Dis   \n",
              "\n",
              "                                       abstract_summary language  \n",
              "6252                                      Not provided.       en  \n",
              "4684                                      Not provided.       en  \n",
              "1731   KEYWORDS\\nPandemic Influenza Disaster<br>prep...       en  \n",
              "4742   Cryptosporidium parvum is recognized as one o...       en  \n",
              "4521   , Brazil, in the period of Background: The<br...       en  \n",
              "...                                                 ...      ...  \n",
              "967    Many new infectious diseases in humans have<b...       en  \n",
              "6043   The Middle East respiratory syndrome<br>coron...       en  \n",
              "6879   The current novel coronavirus outbreak<br>app...       en  \n",
              "6775                                      Not provided.       en  \n",
              "3295                                      Not provided.       en  \n",
              "\n",
              "[1454 rows x 9 columns]"
            ]
          },
          "execution_count": 7,
          "metadata": {},
          "output_type": "execute_result"
        }
      ],
      "source": [
        "df"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "bg0kqgDgDGKk"
      },
      "source": [
        "<div dir=rtl>\n",
        "<font color='yellow'>\n",
        "توکنایز کردن (Tokenization) یکی از مراحل اولیه پردازش زبان طبیعی (NLP) است و به معنای شکستن یک متن به واحدهای کوچکتر (توکن‌ها) است. این واحدهای کوچکتر معمولاً شامل کلمات، عبارات، جملات یا حتی کاراکترها می‌باشند، بسته به نوع توکنایز کردن و کاربرد آن.\n",
        "با استفاده از مدل‌های spaCy،توکن‌ها به کلمات و نشانه‌ها تقسیم می‌شوند که می‌تواند برای تحلیل‌های بعدی استفاده شود.\n",
        "</div>"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "tNk-2A46YiYO"
      },
      "source": [
        "<div dir=rtl>\n",
        "<font color='yellow'>\n",
        "Lemmatization یک فرآیند پردازش متن است که به ازای هر کلمه، شکل اصلی آن را استخراج می‌کند. در این فرآیند، کلمات به شکل استاندارد یا ریشه‌ی کلی خود بازنویسی می‌شوند. به عبارت دیگر، Lemmatization به ما کمک می‌کند تا از کلمات در قالب استاندارد و یکتا استفاده کنیم، بدون توجه به شکل‌های مختلف و تغییرات گرامری ممکن.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "کاربرد اصلی Lemmatization در پردازش متن و پردازش زبان طبیعی است. با استفاده از لمات‌های استاندارد، می‌توانیم تحلیل متن، خوشه‌بندی، جستجو و دسته‌بندی موثرتری انجام دهیم. همچنین، این فرآیند می‌تواند بهبود مدل‌های پردازش متن و مدل‌های یادگیری ماشین کمک کند، زیرا باعث کاهش ابهامات و تفاوت‌های گرامری در داده‌ها می‌شود.\n",
        "\n",
        "</div>"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "yFcR1g0mdUY2"
      },
      "source": [
        "<div dir=rtl>\n",
        "<font color='yellow'>\n",
        "حذف Stopwords و علائم نشانه‌گذاری (Punctuation) دو مرحله مهم در پیش‌پردازش داده‌های متنی هستند. این مراحل به بهبود عملکرد مدل‌های پردازش زبان طبیعی (NLP) کمک می‌کنند.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "stopwords:کلماتی هستند که به تنهایی اطلاعات خاصی ارائه نمی‌دهند و برای درک کلی متن ضروری نیستند. این کلمات شامل کلماتی مانند \"و\"، \"به\"، \"از\"، \"است\" و غیره هستند\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "کاربرد حذف Stopwords:\n",
        "- **کاهش حجم داده:** با حذف کلمات غیرمفید، حجم داده کاهش می‌یابد که منجر به بهبود کارایی و سرعت پردازش می‌شود.\n",
        "- **بهبود دقت مدل‌ها:** حذف کلمات غیرمفید کمک می‌کند تا مدل‌های NLP بر روی کلمات و مفاهیم مهم‌تر تمرکز کنند، که می‌تواند دقت مدل را افزایش دهد.\n",
        "- **کاهش نویز:** Stopwords می‌توانند به عنوان نویز در داده‌ها عمل کنند و مدل‌ها را گمراه کنند. حذف آن‌ها به کاهش این نویز کمک می‌کند.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "حذف علائم نشانه‌گذاری (Punctuation)\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "علائم نشانه‌گذاری شامل کاراکترهایی مانند نقطه، ویرگول، علامت سوال و غیره هستند. این کاراکترها معمولاً برای تجزیه و تحلیل معنایی متن ضروری نیستند.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        " کاربرد حذف علائم نشانه‌گذاری:\n",
        "- **ساده‌سازی متن:** حذف علائم نشانه‌گذاری باعث ساده‌تر شدن متن و کاهش پیچیدگی آن می‌شود.\n",
        "- **استخراج بهتر ویژگی‌ها:** بسیاری از مدل‌های NLP به جایگزینی و یا حذف علائم نشانه‌گذاری نیاز دارند تا بتوانند ویژگی‌های مهم‌تر متن را استخراج کنند.\n",
        "- **بهبود دقت مدل‌ها:** همانند حذف Stopwords، حذف علائم نشانه‌گذاری نیز به کاهش نویز و افزایش دقت مدل کمک می‌کند.\n",
        "</div>"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 8,
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "id": "FMaV9mjGotls",
        "outputId": "c2b03ba7-1213-4093-e360-996473e0fa12"
      },
      "outputs": [
        {
          "name": "stderr",
          "output_type": "stream",
          "text": [
            "[nltk_data] Downloading package stopwords to /home/sina/nltk_data...\n",
            "[nltk_data]   Package stopwords is already up-to-date!\n",
            "[nltk_data] Downloading package punkt to /home/sina/nltk_data...\n",
            "[nltk_data]   Package punkt is already up-to-date!\n"
          ]
        },
        {
          "data": {
            "text/plain": [
              "True"
            ]
          },
          "execution_count": 8,
          "metadata": {},
          "output_type": "execute_result"
        }
      ],
      "source": [
        "import nltk\n",
        "\n",
        "# دانلود مجموعه stopwords\n",
        "nltk.download('stopwords')\n",
        "nltk.download('punkt')"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "m8WMQYbcgCda"
      },
      "source": [
        "<div dir=rtl>\n",
        "<font color='yellow'>\n",
        "کد زیر فرآیند پیش‌پردازش متون در یک DataFrame را انجام می‌دهد. این فرآیند شامل توکنایز کردن، Lemmatization، حذف Stopwords و حذف علائم نشانه‌گذاری است. در نهایت، متون پردازش شده در یک ستون جدید ذخیره می‌شوند. در ادامه به توضیح جزئیات هر قسمت از کد می‌پردازیم:\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "- وارد کردن کتابخانه‌های لازم: `stopwords` از `NLTK`، `re` برای عملیات مربوط به عبارات باقاعده، و `word_tokenize` برای توکنایز کردن.\n",
        "- بارگذاری مدل بزرگ انگلیسی علمی `spaCy` (`en_core_sci_lg`) برای استفاده از Lemmatization. اجزای `tagger` و `ner` غیرفعال شده‌اند تا سرعت پردازش افزایش یابد. حداکثر طول ورودی برای مدل به 3,000,000 کاراکتر افزایش یافته است.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "لیست Stopwords انگلیسی از `NLTK` بارگذاری شده و به مجموعه‌ای تبدیل می‌شود تا دسترسی به آن سریع‌تر باشد.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        " تابع `tokenize_and_lemmatize`، متن ورودی را توکنایز کرده و برای هر توکن Lemmatization انجام می‌دهد. خروجی این تابع لیستی از(شکل‌های پایه) توکن‌ها است.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        " تابع `remove_stopwords`، توکن‌هایی که در مجموعه Stopwords هستند را از لیست توکن‌ها حذف می‌کند.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        " تابع `remove_punctuation`، علائم نشانه‌گذاری را از توکن‌ها حذف می‌کند.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "سپس، برای هر متن در ستون `body_text`، تابع `tokenize_and_lemmatize` اعمال شده و نتیجه در ستون جدید `tokens` ذخیره می‌شود.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "توکن‌های ذخیره شده در ستون `tokens`نیز بررسی شده و  Stopwords حذف می‌شوند.\n",
        "سپس\n",
        "علائم نشانه‌گذاری از توکن‌های موجود در ستون `tokens` حذف می‌شوند.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "در نهایت، توکن‌های پردازش شده با استفاده از فاصله به یک رشته ترکیب شده و نتیجه در ستون جدید `processed_text` ذخیره می‌شود.\n",
        "</div>"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 9,
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "id": "18hUZU31m4qM",
        "outputId": "3803c9fd-1cd9-4e63-b623-f6930bab13af"
      },
      "outputs": [
        {
          "name": "stderr",
          "output_type": "stream",
          "text": [
            "/home/sina/Desktop/dm_proj_3/venv/lib/python3.10/site-packages/spacy/language.py:2195: FutureWarning: Possible set union at position 6328\n",
            "  deserializers[\"tokenizer\"] = lambda p: self.tokenizer.from_disk(  # type: ignore[union-attr]\n",
            "/home/sina/Desktop/dm_proj_3/venv/lib/python3.10/site-packages/spacy/pipeline/lemmatizer.py:211: UserWarning: [W108] The rule-based lemmatizer did not find POS annotation for one or more tokens. Check that your pipeline includes components that assign token.pos, typically 'tagger'+'attribute_ruler' or 'morphologizer'.\n",
            "  warnings.warn(Warnings.W108)\n"
          ]
        }
      ],
      "source": [
        "from nltk.corpus import stopwords\n",
        "import re\n",
        "from nltk.tokenize import word_tokenize\n",
        "\n",
        "# بارگذاری مدل spaCy برای استفاده از Lemmatization با غیر فعال کردن برخی اجزا\n",
        "parser = spacy.load(\"en_core_sci_lg\", disable=[\"tagger\", \"ner\"])\n",
        "parser.max_length = 3000000\n",
        "\n",
        "# لیست Stopwords انگلیسی از NLTK\n",
        "stop_words = set(stopwords.words('english'))\n",
        "\n",
        "# تابعی برای توکنایز کردن و اعمال Lemmatization بر روی متن\n",
        "def tokenize_and_lemmatize(text):\n",
        "    doc = parser(text)\n",
        "    return [token.lemma_ for token in doc]\n",
        "\n",
        "# تابعی برای حذف Stopwords از لیست توکن‌ها\n",
        "def remove_stopwords(tokens):\n",
        "    return [token for token in tokens if token.lower() not in stop_words]\n",
        "\n",
        "# تابعی برای حذف علائم نشانه‌گذاری از لیست توکن‌ها\n",
        "def remove_punctuation(tokens):\n",
        "    return [re.sub(r'[^\\w\\s]', '', token) for token in tokens if re.sub(r'[^\\w\\s]', '', token)]\n",
        "\n",
        "# اعمال توکنایز کردن و Lemmatization بر روی فیچر body_text\n",
        "df['tokens'] = df['body_text'].apply(tokenize_and_lemmatize)\n",
        "\n",
        "# حذف Stopwords\n",
        "df['tokens'] = df['tokens'].apply(remove_stopwords)\n",
        "\n",
        "# حذف علائم نشانه‌گذاری\n",
        "df['tokens'] = df['tokens'].apply(remove_punctuation)\n",
        "\n",
        "# ترکیب توکن‌ها به یک رشته و ذخیره نتیجه در یک ستون جدید به نام processed_text\n",
        "df['processed_text'] = df['tokens'].apply(lambda tokens: ' '.join(tokens))"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 10,
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/",
          "height": 999
        },
        "id": "BI4ALHkhxuHF",
        "outputId": "e56c1fe2-48eb-4899-b5cc-929afc813c06"
      },
      "outputs": [
        {
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              "      <td>fefd6cdcddcb00d1ba2ef1a0d3bba9f312010a1d</td>\n",
              "      <td>10.1111/j.1524-4733.2008.00379.x</td>\n",
              "      <td></td>\n",
              "      <td>China is the biggest country in the world that...</td>\n",
              "      <td>Li, Youing.  Sun, Xin.  Wang, Li</td>\n",
              "      <td>Evidence-Based Medicine in China</td>\n",
              "      <td>Value in Health</td>\n",
              "      <td>Not provided.</td>\n",
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              "      <td>10.1007/s13238-010-0029-7</td>\n",
              "      <td></td>\n",
              "      <td>✉ Correspondence: zlshi@wh.iov.cn Bat, the onl...</td>\n",
              "      <td>Shi, Zhengli</td>\n",
              "      <td>Bat and virus</td>\n",
              "      <td>Protein &amp; Cell</td>\n",
              "      <td>Not provided.</td>\n",
              "      <td>en</td>\n",
              "      <td>[correspondence, zlshiwhiovcn, bat, flying, ma...</td>\n",
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              "      <td>10.1016/j.ccc.2019.06.001</td>\n",
              "      <td>KEYWORDS\\nPandemic Influenza Disaster prepared...</td>\n",
              "      <td>Outbreaks of infectious disease pose unique ch...</td>\n",
              "      <td>Maves, Ryan C..  Jamros, Christina M..  Smith...</td>\n",
              "      <td>Intensive Care Unit Preparedness During&lt;br&gt;Pa...</td>\n",
              "      <td>Crit Care Clin</td>\n",
              "      <td>KEYWORDS\\nPandemic Influenza Disaster&lt;br&gt;prep...</td>\n",
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              "      <td>Diarrhoeal diseases of infectious aethiology r...</td>\n",
              "      <td>Klein, Pavel.  Kleinová, Tereza.  Volek,&lt;br&gt;Z...</td>\n",
              "      <td>Effect of Cryptosporidium parvum infection on...</td>\n",
              "      <td>Veterinary Parasitology</td>\n",
              "      <td>Cryptosporidium parvum is recognized as one o...</td>\n",
              "      <td>en</td>\n",
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              "      <td>10.1111/irv.12518</td>\n",
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              "      <td>The inclusion criteria for asymptomatic adults...</td>\n",
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              "      <td>...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>967</th>\n",
              "      <td>e021d75c9a2c8f02f80ccfbad4133b15d1777576</td>\n",
              "      <td>10.1038/sj.eye.6701885</td>\n",
              "      <td>Many new infectious diseases in humans have be...</td>\n",
              "      <td>Severe acute respiratory syndrome (SARS) is th...</td>\n",
              "      <td>Chan, W-M.  Liu, D T L.  Chan, P K S.  Chong,...</td>\n",
              "      <td>Precautions in ophthalmic practice in a&lt;br&gt;ho...</td>\n",
              "      <td>Eye (Lond)</td>\n",
              "      <td>Many new infectious diseases in humans have&lt;b...</td>\n",
              "      <td>en</td>\n",
              "      <td>[severe, acute, respiratory, syndrome, sars, m...</td>\n",
              "      <td>severe acute respiratory syndrome sars modern ...</td>\n",
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              "    <tr>\n",
              "      <th>6043</th>\n",
              "      <td>24beb94c313a07be6b0c745a6ca8a3d810618506</td>\n",
              "      <td></td>\n",
              "      <td>The Middle East respiratory syndrome coronavir...</td>\n",
              "      <td>The Middle East respiratory syndrome (MERS) is...</td>\n",
              "      <td>Ozharovskaia, T. A..  Zubkova, O. V.. &lt;br&gt;Dol...</td>\n",
              "      <td>Immunogenicity of Different Forms of Middle&lt;b...</td>\n",
              "      <td>Acta Naturae</td>\n",
              "      <td>The Middle East respiratory syndrome&lt;br&gt;coron...</td>\n",
              "      <td>en</td>\n",
              "      <td>[middle, east, respiratory, syndrome, mers, ac...</td>\n",
              "      <td>middle east respiratory syndrome mers acute in...</td>\n",
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              "    <tr>\n",
              "      <th>6879</th>\n",
              "      <td>94475eaa419b11d7edf53c2fe4e423acef0ce881</td>\n",
              "      <td>10.12688/wellcomeopenres.15718.1</td>\n",
              "      <td>The current novel coronavirus outbreak appears...</td>\n",
              "      <td>The ongoing outbreak of novel Coronavirus appe...</td>\n",
              "      <td>Abbott, Sam.  Hellewell, Joel.  Munday, James...</td>\n",
              "      <td>The transmissibility of novel Coronavirus in&lt;...</td>\n",
              "      <td>Wellcome Open Res</td>\n",
              "      <td>The current novel coronavirus outbreak&lt;br&gt;app...</td>\n",
              "      <td>en</td>\n",
              "      <td>[ongoing, outbreak, novel, coronavirus, appear...</td>\n",
              "      <td>ongoing outbreak novel coronavirus appears ori...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>6775</th>\n",
              "      <td>a6ab8b27158a48683b4fa6d081614cde9087cc5e</td>\n",
              "      <td>10.1016/j.bja.2020.05.002</td>\n",
              "      <td></td>\n",
              "      <td>Editor -The critical shortage of medical suppl...</td>\n",
              "      <td>Lang, Angela L..  Shaw, Kendrick M..  Lozano,...</td>\n",
              "      <td>Effectiveness of a negative-pressure patient&lt;...</td>\n",
              "      <td>Br. j. anaesth</td>\n",
              "      <td>Not provided.</td>\n",
              "      <td>en</td>\n",
              "      <td>[editor, the, critical, shortage, medical, sup...</td>\n",
              "      <td>editor the critical shortage medical supplies ...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>3295</th>\n",
              "      <td>a3ef5e2ffb31783af550c32f7512c0330ab9bc93</td>\n",
              "      <td>10.3201/eid1602.090780</td>\n",
              "      <td></td>\n",
              "      <td>To determine the epidemiologic and clinical fe...</td>\n",
              "      <td>Field, Hume.  Schaaf, Kylie.  Kung, Nina.  Si...</td>\n",
              "      <td>Hendra Virus Outbreak with Novel Clinical&lt;br&gt;...</td>\n",
              "      <td>Emerg Infect Dis</td>\n",
              "      <td>Not provided.</td>\n",
              "      <td>en</td>\n",
              "      <td>[determine, epidemiologic, clinical, features,...</td>\n",
              "      <td>determine epidemiologic clinical features 2008...</td>\n",
              "    </tr>\n",
              "  </tbody>\n",
              "</table>\n",
              "<p>1454 rows × 11 columns</p>\n",
              "</div>"
            ],
            "text/plain": [
              "                                      paper_id  \\\n",
              "6252  fefd6cdcddcb00d1ba2ef1a0d3bba9f312010a1d   \n",
              "4684  2a3d080d5dcf6771db002366691f35e5d6f0e493   \n",
              "1731  2de657aabab331e75657bfc1443542fd345b6f26   \n",
              "4742  bc22758234283f024f16e2dbe660bc909b512b92   \n",
              "4521  a204aafa38365dbcc0a26af3ca2c6d3313d7fab2   \n",
              "...                                        ...   \n",
              "967   e021d75c9a2c8f02f80ccfbad4133b15d1777576   \n",
              "6043  24beb94c313a07be6b0c745a6ca8a3d810618506   \n",
              "6879  94475eaa419b11d7edf53c2fe4e423acef0ce881   \n",
              "6775  a6ab8b27158a48683b4fa6d081614cde9087cc5e   \n",
              "3295  a3ef5e2ffb31783af550c32f7512c0330ab9bc93   \n",
              "\n",
              "                                   doi  \\\n",
              "6252  10.1111/j.1524-4733.2008.00379.x   \n",
              "4684         10.1007/s13238-010-0029-7   \n",
              "1731         10.1016/j.ccc.2019.06.001   \n",
              "4742      10.1016/j.vetpar.2007.11.020   \n",
              "4521                 10.1111/irv.12518   \n",
              "...                                ...   \n",
              "967             10.1038/sj.eye.6701885   \n",
              "6043                                     \n",
              "6879  10.12688/wellcomeopenres.15718.1   \n",
              "6775         10.1016/j.bja.2020.05.002   \n",
              "3295            10.3201/eid1602.090780   \n",
              "\n",
              "                                               abstract  \\\n",
              "6252                                                      \n",
              "4684                                                      \n",
              "1731  KEYWORDS\\nPandemic Influenza Disaster prepared...   \n",
              "4742  Cryptosporidium parvum is recognized as one of...   \n",
              "4521  , Brazil, in the period of Background: The res...   \n",
              "...                                                 ...   \n",
              "967   Many new infectious diseases in humans have be...   \n",
              "6043  The Middle East respiratory syndrome coronavir...   \n",
              "6879  The current novel coronavirus outbreak appears...   \n",
              "6775                                                      \n",
              "3295                                                      \n",
              "\n",
              "                                              body_text  \\\n",
              "6252  China is the biggest country in the world that...   \n",
              "4684  ✉ Correspondence: zlshi@wh.iov.cn Bat, the onl...   \n",
              "1731  Outbreaks of infectious disease pose unique ch...   \n",
              "4742  Diarrhoeal diseases of infectious aethiology r...   \n",
              "4521  The inclusion criteria for asymptomatic adults...   \n",
              "...                                                 ...   \n",
              "967   Severe acute respiratory syndrome (SARS) is th...   \n",
              "6043  The Middle East respiratory syndrome (MERS) is...   \n",
              "6879  The ongoing outbreak of novel Coronavirus appe...   \n",
              "6775  Editor -The critical shortage of medical suppl...   \n",
              "3295  To determine the epidemiologic and clinical fe...   \n",
              "\n",
              "                                                authors  \\\n",
              "6252                   Li, Youing.  Sun, Xin.  Wang, Li   \n",
              "4684                                       Shi, Zhengli   \n",
              "1731   Maves, Ryan C..  Jamros, Christina M..  Smith...   \n",
              "4742   Klein, Pavel.  Kleinová, Tereza.  Volek,<br>Z...   \n",
              "4521   Moreira, Luciana Peniche.  Watanabe, Aripuana...   \n",
              "...                                                 ...   \n",
              "967    Chan, W-M.  Liu, D T L.  Chan, P K S.  Chong,...   \n",
              "6043   Ozharovskaia, T. A..  Zubkova, O. V.. <br>Dol...   \n",
              "6879   Abbott, Sam.  Hellewell, Joel.  Munday, James...   \n",
              "6775   Lang, Angela L..  Shaw, Kendrick M..  Lozano,...   \n",
              "3295   Field, Hume.  Schaaf, Kylie.  Kung, Nina.  Si...   \n",
              "\n",
              "                                                  title  \\\n",
              "6252                   Evidence-Based Medicine in China   \n",
              "4684                                      Bat and virus   \n",
              "1731   Intensive Care Unit Preparedness During<br>Pa...   \n",
              "4742   Effect of Cryptosporidium parvum infection on...   \n",
              "4521   Respiratory syncytial virus evaluation among<...   \n",
              "...                                                 ...   \n",
              "967    Precautions in ophthalmic practice in a<br>ho...   \n",
              "6043   Immunogenicity of Different Forms of Middle<b...   \n",
              "6879   The transmissibility of novel Coronavirus in<...   \n",
              "6775   Effectiveness of a negative-pressure patient<...   \n",
              "3295   Hendra Virus Outbreak with Novel Clinical<br>...   \n",
              "\n",
              "                             journal  \\\n",
              "6252                 Value in Health   \n",
              "4684                  Protein & Cell   \n",
              "1731                  Crit Care Clin   \n",
              "4742         Veterinary Parasitology   \n",
              "4521  Influenza Other Respir Viruses   \n",
              "...                              ...   \n",
              "967                       Eye (Lond)   \n",
              "6043                    Acta Naturae   \n",
              "6879               Wellcome Open Res   \n",
              "6775                  Br. j. anaesth   \n",
              "3295                Emerg Infect Dis   \n",
              "\n",
              "                                       abstract_summary language  \\\n",
              "6252                                      Not provided.       en   \n",
              "4684                                      Not provided.       en   \n",
              "1731   KEYWORDS\\nPandemic Influenza Disaster<br>prep...       en   \n",
              "4742   Cryptosporidium parvum is recognized as one o...       en   \n",
              "4521   , Brazil, in the period of Background: The<br...       en   \n",
              "...                                                 ...      ...   \n",
              "967    Many new infectious diseases in humans have<b...       en   \n",
              "6043   The Middle East respiratory syndrome<br>coron...       en   \n",
              "6879   The current novel coronavirus outbreak<br>app...       en   \n",
              "6775                                      Not provided.       en   \n",
              "3295                                      Not provided.       en   \n",
              "\n",
              "                                                 tokens  \\\n",
              "6252  [china, biggest, country, world, 13, billion, ...   \n",
              "4684  [correspondence, zlshiwhiovcn, bat, flying, ma...   \n",
              "1731  [outbreaks, infectious, disease, pose, unique,...   \n",
              "4742  [diarrhoeal, diseases, infectious, aethiology,...   \n",
              "4521  [inclusion, criteria, asymptomatic, adults, ab...   \n",
              "...                                                 ...   \n",
              "967   [severe, acute, respiratory, syndrome, sars, m...   \n",
              "6043  [middle, east, respiratory, syndrome, mers, ac...   \n",
              "6879  [ongoing, outbreak, novel, coronavirus, appear...   \n",
              "6775  [editor, the, critical, shortage, medical, sup...   \n",
              "3295  [determine, epidemiologic, clinical, features,...   \n",
              "\n",
              "                                         processed_text  \n",
              "6252  china biggest country world 13 billion populat...  \n",
              "4684  correspondence zlshiwhiovcn bat flying mammal ...  \n",
              "1731  outbreaks infectious disease pose unique chall...  \n",
              "4742  diarrhoeal diseases infectious aethiology repr...  \n",
              "4521  inclusion criteria asymptomatic adults absence...  \n",
              "...                                                 ...  \n",
              "967   severe acute respiratory syndrome sars modern ...  \n",
              "6043  middle east respiratory syndrome mers acute in...  \n",
              "6879  ongoing outbreak novel coronavirus appears ori...  \n",
              "6775  editor the critical shortage medical supplies ...  \n",
              "3295  determine epidemiologic clinical features 2008...  \n",
              "\n",
              "[1454 rows x 11 columns]"
            ]
          },
          "execution_count": 10,
          "metadata": {},
          "output_type": "execute_result"
        }
      ],
      "source": [
        "df"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "-Ks9shj8UMGm"
      },
      "source": [
        "<font face=\"B Mitra\">\n",
        "<div dir=rtl>\n",
        "<font size=6>\n",
        "<b> استخراج ویژگی </b>\n",
        "<br>\n",
        "<p align=\"justify\">\n",
        "<font size=5>\n",
        "اکنون که متن بدنهٔ مقاله‌ها را از قبل پردازش کرده‌ایم، زمان تبدیل آن‌ها به قالبی است که توسط الگوریتم‌های ما قابل استفاده باشد. برای این منظور از tf-idf استفاده خواهیم کرد. tf_idf  یک الگوریتم بسیار رایج برای تبدیل متن به نمایش معنی دار اعداد است که اهمیت هر کلمه را در متن موردنظر نشان میدهد. <br>\n",
        "درمورد عملکرد این روش جستجو کنید.\n",
        " برای متن پیش پردازش شده هر مقاله، با استفاده از این روش یک بازنمایی برداری با حداکثر 4096 ویژگی ایجاد کنید.\n",
        "</p>\n",
        "</font>\n",
        "</div>\n",
        "</font>"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "radZAGXzxbkb"
      },
      "source": [
        "<div dir=rtl>\n",
        "\n",
        "<font color='yellow'>\n",
        "ماتریس TF-IDF (مخفف Term Frequency-Inverse Document Frequency) یک روش محاسبهٔ وزن و اهمیت واژه‌ها در متن‌ها است. این ماتریس برای تحلیل متون و برداشت اطلاعات مفید از آن‌ها استفاده می‌شود. هدف اصلی TF-IDF، تشخیص واژه‌های مهم در یک متن است.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "محاسبهٔ ماتریس TF-IDF برای یک مجموعهٔ اسناد شامل دو بخش اصلی است: تعداد تکرار واژه‌ها در هر سند (Term Frequency) و وزن واژه‌ها بر اساس فراوانی ظهور آن‌ها در مجموعهٔ اسناد (Inverse Document Frequency).\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "مراحل محاسبهٔ ماتریس TF-IDF به شرح زیر است:\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "1. تعداد تکرار واژه‌ها (Term Frequency - TF):\n",
        "   - برای هر سند در مجموعهٔ اسناد، تعداد تکرار هر واژه را محاسبه می‌کنیم. این میزان تکرار می‌تواند به صورت ساده (تعداد تکرار واژه در سند) یا نرمال شده (تعداد تکرار واژه تقسیم بر کل تعداد واژه‌های سند) باشد. هدف از نرمال‌سازی، رفع تأثیر طول سند بر تعداد تکرار واژه‌ها است.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "2. وزن واژه‌ها بر اساس فراوانی ظهور آن‌ها در مجموعهٔ اسناد (Inverse Document Frequency - IDF):\n",
        "   - محاسبهٔ تعداد سندهایی که واژه در آن‌ها ظاهر می‌شود (Document Frequency).\n",
        "   - محاسبهٔ IDF بر اساس نسبت تعداد کل سندها به تعداد سندهایی که واژه در آن‌ها ظاهر می‌شود. به صورت ریاضی: IDF = log(N / DF)، که N تعداد کل سندها و DF تعداد سندهایی است که واژه در آن‌ها ظاهر می‌شود.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "3. محاسبهٔ مقدار TF-IDF:\n",
        "   - در این مرحله، مقدار TF را در مقدار IDF ضرب می‌کنیم تا وزن نهایی واژه‌ها در هر سند را بدست آوریم. این کار باعث می‌شود که واژه‌هایی که در تعداد زیادی از سندها تکرار می‌شوند و در همان زمان در تعداد کمی از سندها ظاهر می‌شوند، وزن بالاتری دریافت کنند.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "در نتیجه، ماتریس TF-IDF یک ماتریس دو بعدی است که در آن ستون‌ها نمایانگر واژه‌ها و سطرها نمایاین ماتریس نشان می‌دهد که هر واژه در هر سند چه میزان اهمیتی دارد. با داشتن ماتریس TF-IDF، می‌توانیم واژه‌های مهم را شناسایی کنیم و از آن‌ها برای تحلیل متون و استخراج اطلاعات مفید استفاده کنیم.\n",
        "</font>\n",
        "</div>"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 11,
      "metadata": {
        "id": "bnzpP2cW7Q2z"
      },
      "outputs": [],
      "source": [
        "from sklearn.feature_extraction.text import TfidfVectorizer\n",
        "\n",
        "# ایجاد شیء TF-IDF با حداکثر 4096 ویژگی\n",
        "tfidf_vectorizer = TfidfVectorizer(max_features=4096)\n",
        "\n",
        "# اعمال TF-IDF بر روی متن پردازش شده\n",
        "tfidf_matrix = tfidf_vectorizer.fit_transform(df['processed_text'])\n",
        "\n",
        "# تبدیل ماتریس TF-IDF به یک DataFrame\n",
        "tfidf_df = pd.DataFrame(tfidf_matrix.toarray(), columns=tfidf_vectorizer.get_feature_names_out())\n",
        "\n",
        "# افزودن شناسه مقاله (در صورت وجود) به DataFrame جدید\n",
        "if 'article_id' in df.columns:\n",
        "    tfidf_df['article_id'] = df['article_id']"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 12,
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/",
          "height": 423
        },
        "id": "hYtktQecyGpk",
        "outputId": "46f2c474-a0c6-45c1-9f7d-1af2dac77986"
      },
      "outputs": [
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              "      <td>0.0</td>\n",
              "      <td>0.0</td>\n",
              "      <td>0.000000</td>\n",
              "      <td>0.000000</td>\n",
              "      <td>0.00000</td>\n",
              "      <td>0.000000</td>\n",
              "      <td>0.0</td>\n",
              "      <td>...</td>\n",
              "      <td>0.0</td>\n",
              "      <td>0.0</td>\n",
              "      <td>0.0</td>\n",
              "      <td>0.013104</td>\n",
              "      <td>0.0</td>\n",
              "      <td>0.000000</td>\n",
              "      <td>0.00000</td>\n",
              "      <td>0.0</td>\n",
              "      <td>0.00000</td>\n",
              "      <td>0.000000</td>\n",
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              "    <tr>\n",
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              "      <td>0.0</td>\n",
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              "      <td>0.0</td>\n",
              "      <td>0.0</td>\n",
              "      <td>0.0</td>\n",
              "      <td>0.010851</td>\n",
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              "      <td>0.00000</td>\n",
              "      <td>0.000000</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>4</th>\n",
              "      <td>0.0</td>\n",
              "      <td>0.064294</td>\n",
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              "      <td>0.0</td>\n",
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              "      <td>0.000000</td>\n",
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              "      <td>0.02385</td>\n",
              "      <td>0.000000</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>...</th>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
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              "    <tr>\n",
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              "    <tr>\n",
              "      <th>1450</th>\n",
              "      <td>0.0</td>\n",
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              "    <tr>\n",
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              "      <td>0.0</td>\n",
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              "    <tr>\n",
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              "    <tr>\n",
              "      <th>1453</th>\n",
              "      <td>0.0</td>\n",
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              "      <td>0.000000</td>\n",
              "    </tr>\n",
              "  </tbody>\n",
              "</table>\n",
              "<p>1454 rows × 4096 columns</p>\n",
              "</div>"
            ],
            "text/plain": [
              "      000      0001  001  002  003       005        01       02        03  \\\n",
              "0     0.0  0.000000  0.0  0.0  0.0  0.000000  0.000000  0.00000  0.000000   \n",
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              "4     0.0  0.064294  0.0  0.0  0.0  0.000000  0.000000  0.00000  0.000000   \n",
              "...   ...       ...  ...  ...  ...       ...       ...      ...       ...   \n",
              "1449  0.0  0.000000  0.0  0.0  0.0  0.000000  0.000000  0.00000  0.000000   \n",
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              "1453  0.0  0.000000  0.0  0.0  0.0  0.000000  0.000000  0.00000  0.000000   \n",
              "\n",
              "       04  ...  zhang  zikv  zone  zoonotic   µl        µm       à1  μgml  \\\n",
              "0     0.0  ...    0.0   0.0   0.0  0.000000  0.0  0.000000  0.00000   0.0   \n",
              "1     0.0  ...    0.0   0.0   0.0  0.020887  0.0  0.000000  0.00000   0.0   \n",
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              "3     0.0  ...    0.0   0.0   0.0  0.010851  0.0  0.000000  0.03177   0.0   \n",
              "4     0.0  ...    0.0   0.0   0.0  0.000000  0.0  0.000000  0.00000   0.0   \n",
              "...   ...  ...    ...   ...   ...       ...  ...       ...      ...   ...   \n",
              "1449  0.0  ...    0.0   0.0   0.0  0.000000  0.0  0.000000  0.00000   0.0   \n",
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              "1451  0.0  ...    0.0   0.0   0.0  0.000000  0.0  0.000000  0.00000   0.0   \n",
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              "\n",
              "           μl        μm  \n",
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              "...       ...       ...  \n",
              "1449  0.00000  0.000000  \n",
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              "1453  0.00000  0.000000  \n",
              "\n",
              "[1454 rows x 4096 columns]"
            ]
          },
          "execution_count": 12,
          "metadata": {},
          "output_type": "execute_result"
        }
      ],
      "source": [
        "tfidf_df"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "zkE2ydTrUMGm"
      },
      "source": [
        "<font face=\"B Mitra\"><div dir=rtl>\n",
        "<font size=6>\n",
        "<b> PCA </b>\n",
        "<br>\n",
        "<p align=\"justify\">\n",
        "<font size=5>\n",
        "با توجه به ابعاد بالای هر بردار ویژگی، با استفاده از روش PCA با حفظ 95 درصد واریانس کاهش بعد دهید.\n",
        "</p>\n",
        "</font>\n",
        "</div>"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "7nEwL2mE0QbJ"
      },
      "source": [
        "<div dir=rtl>\n",
        "\n",
        "<font color='yellow'>\n",
        "این کد برای اعمال تحلیل ترکیب اصلی (PCA) بر روی داده‌های TF-IDF استفاده می‌شود. هدف اصلی آن این است که با استفاده از PCA، بعد داده‌ها را کاهش داده و حداقل 95 درصد از واریانس اولیه را در داده‌ها حفظ کند.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "در ابتدا، یک شیء PCA با پارامتر `n_components=0.95` ایجاد می‌شود. این بدان معنی است که PCA تا زمانی که تعداد اجزای اصلی (Principal Components) لازم برای حفظ 95 درصد واریانس را بدست آورد، بعد داده‌ها را کاهش می‌دهد.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "سپس، PCA روی داده‌های `tfidf_df` اعمال می‌شود و نتیجه به صورت تبدیل شده‌ای از داده‌های اصلی TF-IDF در `tfidf_pca` ذخیره می‌شود.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "سطر بعدی، یک DataFrame جدید به نام `tfidf_pca_df` ایجاد می‌کند که شامل داده‌های تبدیل شده PCA است. نام ستون‌های DataFrame جدید براساس اجزای اصلی تعیین می‌شود.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "در نهایت، اگر ستون \"article_id\" در `tfidf_df` وجود داشته باشد، آن را به DataFrame جدید `tfidf_pca_df` اضافه می‌کند. این کار به شما امکان می‌دهد تا شناسه مقاله مرتبط با هر سطر از داده‌های PCA را نگه دارید، در غیر این صورت این بخش رد می‌شود.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "در کل، این کد بعد از اعمال PCA بر روی داده‌های TF-IDF، نتیجه را در یک DataFrame جدید ذخیره می‌کند که شامل داده‌های کاهش یافته بعد و شناسه مقاله (در صورت وجود) است.\n",
        "</font>\n",
        "</div>"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 13,
      "metadata": {
        "id": "Nn7maPOiEen9"
      },
      "outputs": [],
      "source": [
        "# اعمال PCA برای کاهش بعد و حفظ 95 درصد واریانس\n",
        "pca = PCA(n_components=0.95)\n",
        "tfidf_pca = pca.fit_transform(tfidf_df.drop(columns=['article_id'], errors='ignore'))\n",
        "\n",
        "# تبدیل نتایج PCA به DataFrame\n",
        "pca_columns = [f'PC{i+1}' for i in range(tfidf_pca.shape[1])]\n",
        "tfidf_pca_df = pd.DataFrame(tfidf_pca, columns=pca_columns)\n",
        "\n",
        "# افزودن شناسه مقاله (در صورت وجود) به DataFrame جدید\n",
        "if 'article_id' in tfidf_df.columns:\n",
        "    tfidf_pca_df['article_id'] = tfidf_df['article_id']"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 14,
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/",
          "height": 443
        },
        "id": "NpnSbkzLziLf",
        "outputId": "85df79c6-8f2b-4c1f-f8fd-d72f5e7baf93"
      },
      "outputs": [
        {
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              "      <th></th>\n",
              "      <th>PC1</th>\n",
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              "      <th>PC951</th>\n",
              "      <th>PC952</th>\n",
              "      <th>PC953</th>\n",
              "      <th>PC954</th>\n",
              "      <th>PC955</th>\n",
              "      <th>PC956</th>\n",
              "      <th>PC957</th>\n",
              "      <th>PC958</th>\n",
              "      <th>PC959</th>\n",
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              "  </thead>\n",
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              "      <td>0.002575</td>\n",
              "      <td>0.015602</td>\n",
              "      <td>-0.015437</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>3</th>\n",
              "      <td>-0.065622</td>\n",
              "      <td>0.019449</td>\n",
              "      <td>0.054963</td>\n",
              "      <td>0.006037</td>\n",
              "      <td>-0.031733</td>\n",
              "      <td>-0.038565</td>\n",
              "      <td>-0.128199</td>\n",
              "      <td>0.149893</td>\n",
              "      <td>-0.055611</td>\n",
              "      <td>-0.002084</td>\n",
              "      <td>...</td>\n",
              "      <td>-0.018114</td>\n",
              "      <td>-0.010139</td>\n",
              "      <td>0.025610</td>\n",
              "      <td>0.009239</td>\n",
              "      <td>0.026927</td>\n",
              "      <td>0.008300</td>\n",
              "      <td>0.013542</td>\n",
              "      <td>-0.006308</td>\n",
              "      <td>-0.019278</td>\n",
              "      <td>-0.019197</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>4</th>\n",
              "      <td>0.078273</td>\n",
              "      <td>-0.116391</td>\n",
              "      <td>0.048610</td>\n",
              "      <td>0.019842</td>\n",
              "      <td>-0.245833</td>\n",
              "      <td>-0.015016</td>\n",
              "      <td>0.065274</td>\n",
              "      <td>0.071805</td>\n",
              "      <td>-0.006330</td>\n",
              "      <td>-0.150230</td>\n",
              "      <td>...</td>\n",
              "      <td>0.001311</td>\n",
              "      <td>0.011509</td>\n",
              "      <td>0.013127</td>\n",
              "      <td>0.001453</td>\n",
              "      <td>0.002497</td>\n",
              "      <td>-0.022562</td>\n",
              "      <td>0.001636</td>\n",
              "      <td>-0.000331</td>\n",
              "      <td>-0.008913</td>\n",
              "      <td>-0.015033</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>...</th>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1449</th>\n",
              "      <td>0.216166</td>\n",
              "      <td>-0.115107</td>\n",
              "      <td>0.100820</td>\n",
              "      <td>-0.048560</td>\n",
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              "      <td>-0.003196</td>\n",
              "      <td>0.060412</td>\n",
              "      <td>0.006417</td>\n",
              "      <td>-0.032015</td>\n",
              "      <td>0.315736</td>\n",
              "      <td>...</td>\n",
              "      <td>0.001657</td>\n",
              "      <td>-0.006855</td>\n",
              "      <td>-0.018528</td>\n",
              "      <td>-0.018441</td>\n",
              "      <td>0.022852</td>\n",
              "      <td>0.003965</td>\n",
              "      <td>0.005031</td>\n",
              "      <td>-0.009335</td>\n",
              "      <td>-0.002795</td>\n",
              "      <td>-0.000721</td>\n",
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              "    <tr>\n",
              "      <th>1450</th>\n",
              "      <td>-0.161563</td>\n",
              "      <td>-0.081903</td>\n",
              "      <td>-0.180353</td>\n",
              "      <td>-0.014879</td>\n",
              "      <td>0.017919</td>\n",
              "      <td>-0.030956</td>\n",
              "      <td>0.057535</td>\n",
              "      <td>0.219554</td>\n",
              "      <td>-0.067498</td>\n",
              "      <td>0.277966</td>\n",
              "      <td>...</td>\n",
              "      <td>-0.006462</td>\n",
              "      <td>-0.005349</td>\n",
              "      <td>-0.008725</td>\n",
              "      <td>0.015207</td>\n",
              "      <td>0.011005</td>\n",
              "      <td>0.007859</td>\n",
              "      <td>0.010024</td>\n",
              "      <td>-0.022676</td>\n",
              "      <td>-0.010384</td>\n",
              "      <td>0.004823</td>\n",
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              "    <tr>\n",
              "      <th>1451</th>\n",
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              "      <td>-0.026326</td>\n",
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              "      <td>-0.032357</td>\n",
              "      <td>0.013690</td>\n",
              "      <td>-0.078774</td>\n",
              "      <td>0.026658</td>\n",
              "      <td>-0.158840</td>\n",
              "      <td>0.014747</td>\n",
              "      <td>...</td>\n",
              "      <td>0.023749</td>\n",
              "      <td>-0.001172</td>\n",
              "      <td>-0.018661</td>\n",
              "      <td>-0.022077</td>\n",
              "      <td>-0.007993</td>\n",
              "      <td>-0.007495</td>\n",
              "      <td>-0.019063</td>\n",
              "      <td>0.017982</td>\n",
              "      <td>-0.003490</td>\n",
              "      <td>-0.022558</td>\n",
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              "    <tr>\n",
              "      <th>1452</th>\n",
              "      <td>0.067811</td>\n",
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              "      <td>-0.009813</td>\n",
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              "      <td>0.041840</td>\n",
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              "      <td>0.061009</td>\n",
              "      <td>-0.062142</td>\n",
              "      <td>0.055143</td>\n",
              "      <td>...</td>\n",
              "      <td>0.000533</td>\n",
              "      <td>0.020168</td>\n",
              "      <td>0.011859</td>\n",
              "      <td>0.007951</td>\n",
              "      <td>0.014574</td>\n",
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              "      <td>0.003552</td>\n",
              "      <td>-0.004192</td>\n",
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              "    <tr>\n",
              "      <th>1453</th>\n",
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              "      <td>0.000374</td>\n",
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              "  </tbody>\n",
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              "<p>1454 rows × 959 columns</p>\n",
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            "text/plain": [
              "           PC1       PC2       PC3       PC4       PC5       PC6       PC7  \\\n",
              "0     0.119723  0.065268  0.079984 -0.236828  0.094082 -0.050585  0.021057   \n",
              "1    -0.250730  0.197872  0.307347  0.072249 -0.025709  0.060989  0.115094   \n",
              "2     0.308483 -0.111703  0.184105 -0.105187  0.046082 -0.082734  0.114551   \n",
              "3    -0.065622  0.019449  0.054963  0.006037 -0.031733 -0.038565 -0.128199   \n",
              "4     0.078273 -0.116391  0.048610  0.019842 -0.245833 -0.015016  0.065274   \n",
              "...        ...       ...       ...       ...       ...       ...       ...   \n",
              "1449  0.216166 -0.115107  0.100820 -0.048560  0.024996 -0.003196  0.060412   \n",
              "1450 -0.161563 -0.081903 -0.180353 -0.014879  0.017919 -0.030956  0.057535   \n",
              "1451  0.078718  0.087668 -0.026326 -0.115879 -0.032357  0.013690 -0.078774   \n",
              "1452  0.067811 -0.015062 -0.009813 -0.087383  0.027344  0.041840 -0.130139   \n",
              "1453  0.050070 -0.029314  0.015125 -0.059414 -0.082425 -0.001246 -0.015835   \n",
              "\n",
              "           PC8       PC9      PC10  ...     PC950     PC951     PC952  \\\n",
              "0    -0.003241  0.217338  0.023047  ... -0.003834 -0.010412 -0.015008   \n",
              "1    -0.066474 -0.098095  0.084825  ... -0.011196 -0.025324  0.001211   \n",
              "2    -0.052597  0.140994  0.199613  ... -0.013641 -0.000595  0.005860   \n",
              "3     0.149893 -0.055611 -0.002084  ... -0.018114 -0.010139  0.025610   \n",
              "4     0.071805 -0.006330 -0.150230  ...  0.001311  0.011509  0.013127   \n",
              "...        ...       ...       ...  ...       ...       ...       ...   \n",
              "1449  0.006417 -0.032015  0.315736  ...  0.001657 -0.006855 -0.018528   \n",
              "1450  0.219554 -0.067498  0.277966  ... -0.006462 -0.005349 -0.008725   \n",
              "1451  0.026658 -0.158840  0.014747  ...  0.023749 -0.001172 -0.018661   \n",
              "1452  0.061009 -0.062142  0.055143  ...  0.000533  0.020168  0.011859   \n",
              "1453  0.093750 -0.073875  0.060959  ...  0.002283  0.002604  0.000125   \n",
              "\n",
              "         PC953     PC954     PC955     PC956     PC957     PC958     PC959  \n",
              "0    -0.014178  0.009260 -0.007399  0.005691  0.019139 -0.013434  0.003987  \n",
              "1    -0.005614 -0.018240  0.008457  0.005622 -0.015000  0.001057 -0.003837  \n",
              "2     0.007949  0.003431  0.016995  0.003550  0.002575  0.015602 -0.015437  \n",
              "3     0.009239  0.026927  0.008300  0.013542 -0.006308 -0.019278 -0.019197  \n",
              "4     0.001453  0.002497 -0.022562  0.001636 -0.000331 -0.008913 -0.015033  \n",
              "...        ...       ...       ...       ...       ...       ...       ...  \n",
              "1449 -0.018441  0.022852  0.003965  0.005031 -0.009335 -0.002795 -0.000721  \n",
              "1450  0.015207  0.011005  0.007859  0.010024 -0.022676 -0.010384  0.004823  \n",
              "1451 -0.022077 -0.007993 -0.007495 -0.019063  0.017982 -0.003490 -0.022558  \n",
              "1452  0.007951  0.014574  0.007063  0.007196 -0.012238  0.003552 -0.004192  \n",
              "1453 -0.012672  0.003668 -0.000319  0.001057  0.006436  0.002983  0.000374  \n",
              "\n",
              "[1454 rows x 959 columns]"
            ]
          },
          "execution_count": 14,
          "metadata": {},
          "output_type": "execute_result"
        }
      ],
      "source": [
        "tfidf_pca_df"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "JWtyVDVwBrAA"
      },
      "source": [
        "<font face=\"B Mitra\">\n",
        "<div dir=rtl>\n",
        "<font size=6>\n",
        "<b> خوشه بندی </b>\n",
        "<br>\n",
        "<p align=\"justify\">\n",
        "<font size=5>\n",
        "خوشه بندی مقالات تحقیقاتی مشابه با هم می تواند جستجوی انتشارات مرتبط را ساده کند.  در اینجا از روش K-Means برای خوشه بندی استفاده میکنیم.<br>\n",
        " با استفاده از روش Elbow Method  از بین تعداد خوشه های داده شده، میتوانید بهترین تعداد خوشه را بیابید.\n",
        "<br>\n",
        "تا 30 خوشه این موضوع را مورد بررسی قرار دهید و پس از یافتن تعداد خوشه مناسب، با استفاده از روش K-Means خوشه بندی لازم را برای بردار ویژگی\n",
        "بدست آماده از مرحلهٔ قبل به کار بگیرید.\n",
        "<br><b> بخش امتیازی:</b> میتوانید با به کارگیری روش های دیگر خوشه بندی نظیر خوشه بندی سلسه مراتبی یا DBSCAN نتایج را با استفاده از یک معیار ارزیابی مناسب  مقایسه کنید.\n",
        "</p>\n",
        "</font>\n",
        "</div>"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "9nYd0PMn9nYL"
      },
      "source": [
        "<div dir=rtl>\n",
        "\n",
        "<font color='yellow'>\n",
        "این کد با استفاده از روش Elbow، تعداد بهینه خوشه‌ها را برای داده‌ها پیدا می‌کند. نمودار Elbow نشان می‌دهد که معیار اعوجاج (distortion) با افزایش تعداد خوشه‌ها چگونه تغییر می‌کند. نقطه‌ای که تغییر معیار اعوجاج به شدت کاهش می‌یابد (شبیه آرنج) به عنوان تعداد بهینه خوشه‌ها در نظر گرفته می‌شود.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "تعریف لیست distortions و بردار K:\n",
        "<br>\n",
        "distortions برای ذخیره معیار اعوجاج (inertia) که معیار خوبی برای ارزیابی کیفیت خوشه‌بندی است، تعریف می‌شود.\n",
        "K برداری از 1 تا 30 برای تعداد خوشه‌های مختلف است که الگوریتم K-Means با هر یک از این تعداد خوشه‌ها اجرا خواهد شد.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "اجرای الگوریتم K-Means برای تعداد خوشه‌های مختلف:\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "حلقه for بر روی بردار K اجرا می‌شود و برای هر مقدار k، یک مدل K-Means با تعداد خوشه‌های k ایجاد می‌شود.\n",
        "مدل K-Means بر روی داده‌های tfidf_pca_df که ستون article_id در آن حذف شده، آموزش داده می‌شود.\n",
        "مقدار معیار اعوجاج (inertia) مدل آموزش‌دیده با استفاده از kmeanModel.inertia_ استخراج و به لیست distortions اضافه می‌شود.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "ترسیم نمودار Elbow:\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "نمودار K در مقابل distortions ترسیم می‌شود.\n",
        "محورهای x و y برچسب‌گذاری می‌شوند.\n",
        "عنوان نمودار تنظیم می‌شود.\n",
        "نمودار نمایش داده می‌شود.\n",
        "<br>\n",
        "</div>"
      ]
    },
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        "outputId": "9bd8ac89-1209-4b95-f3c4-d69d8479823a"
      },
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              " </g>\n",
              " <defs>\n",
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              "</svg>\n"
            ],
            "text/plain": [
              "<Figure size 1000x500 with 1 Axes>"
            ]
          },
          "metadata": {},
          "output_type": "display_data"
        }
      ],
      "source": [
        "from sklearn.cluster import KMeans\n",
        "\n",
        "### apply elbow method to find the optimal number of clusters from 1 to 30\n",
        "\n",
        "distortions = []\n",
        "K = range(1,30)\n",
        "for k in K:\n",
        "    kmeanModel = KMeans(n_clusters=k)\n",
        "    kmeanModel.fit(tfidf_pca_df.drop(columns=['article_id'], errors='ignore'))\n",
        "    distortions.append(kmeanModel.inertia_)\n",
        "\n",
        "# Plot the elbow\n",
        "plt.figure(figsize=(10,5))\n",
        "plt.plot(K, distortions, 'bx-')\n",
        "plt.xlabel('k')\n",
        "plt.ylabel('Distortion')\n",
        "plt.title('The Elbow Method showing the optimal k')\n",
        "plt.show()"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "e7uWmSGt-VL2"
      },
      "source": [
        "<div dir=rtl>\n",
        "\n",
        "<font color='yellow'>\n",
        "این کد داده‌ها را به 13 خوشه تقسیم می‌کند و برچسب خوشه‌ها را به DataFrame اضافه می‌کند. این کار  اجازه می‌دهد تا ببینیم هر نمونه به کدام خوشه تعلق دارد و از این اطلاعات برای تحلیل‌های بعدی استفاده کنیم. به طور کلی، این فرآیند می‌تواند برای تحلیل خوشه‌ای، تجزیه و تحلیل اکتشافی داده‌ها، و شناسایی الگوها و گروه‌های مشابه در داده‌ها مفید باشد.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "انتخاب تعداد خوشه‌ها:\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "بر اساس نتایج روش Elbow، تعداد خوشه‌ها 13 انتخاب شده است.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "ایجاد مدل K-Means:\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "مدل K-Means با تعداد خوشه‌های مشخص (13) و مقدار random_state برای اطمینان از تکرارپذیری نتایج، ایجاد می‌شود.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "آموزش مدل K-Means:\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "مدل K-Means با استفاده از داده‌های موجود در tfidf_pca_df آموزش داده می‌شود. ستون article_id در صورت وجود حذف می‌شود تا فقط داده‌های ویژگی عددی برای خوشه‌بندی استفاده شوند.\n",
        "تابع fit مدل K-Means را با داده‌های tfidf_pca_df آموزش می‌دهد.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "افزودن برچسب خوشه‌ها به DataFrame:\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "پس از آموزش مدل، برچسب‌های خوشه برای هر نمونه با استفاده از kmeans.labels_ استخراج و به عنوان یک ستون جدید به نام cluster به DataFrame tfidf_pca_df اضافه می‌شوند.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "نمایش DataFrame به‌روز شده:\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "DataFrame tfidf_pca_df که اکنون شامل برچسب خوشه‌ها است، نمایش داده می‌شود.\n",
        "<br>\n",
        "</div>"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 16,
      "metadata": {
        "id": "OabymK3uWWqB",
        "outputId": "a0cfa94f-8a3b-49ff-e83d-793de7f38bab"
      },
      "outputs": [
        {
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              "  <thead>\n",
              "    <tr style=\"text-align: right;\">\n",
              "      <th></th>\n",
              "      <th>PC1</th>\n",
              "      <th>PC2</th>\n",
              "      <th>PC3</th>\n",
              "      <th>PC4</th>\n",
              "      <th>PC5</th>\n",
              "      <th>PC6</th>\n",
              "      <th>PC7</th>\n",
              "      <th>PC8</th>\n",
              "      <th>PC9</th>\n",
              "      <th>PC10</th>\n",
              "      <th>...</th>\n",
              "      <th>PC951</th>\n",
              "      <th>PC952</th>\n",
              "      <th>PC953</th>\n",
              "      <th>PC954</th>\n",
              "      <th>PC955</th>\n",
              "      <th>PC956</th>\n",
              "      <th>PC957</th>\n",
              "      <th>PC958</th>\n",
              "      <th>PC959</th>\n",
              "      <th>cluster</th>\n",
              "    </tr>\n",
              "  </thead>\n",
              "  <tbody>\n",
              "    <tr>\n",
              "      <th>0</th>\n",
              "      <td>0.119723</td>\n",
              "      <td>0.065268</td>\n",
              "      <td>0.079984</td>\n",
              "      <td>-0.236828</td>\n",
              "      <td>0.094082</td>\n",
              "      <td>-0.050585</td>\n",
              "      <td>0.021057</td>\n",
              "      <td>-0.003241</td>\n",
              "      <td>0.217338</td>\n",
              "      <td>0.023047</td>\n",
              "      <td>...</td>\n",
              "      <td>-0.010412</td>\n",
              "      <td>-0.015008</td>\n",
              "      <td>-0.014178</td>\n",
              "      <td>0.009260</td>\n",
              "      <td>-0.007399</td>\n",
              "      <td>0.005691</td>\n",
              "      <td>0.019139</td>\n",
              "      <td>-0.013434</td>\n",
              "      <td>0.003987</td>\n",
              "      <td>11</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1</th>\n",
              "      <td>-0.250730</td>\n",
              "      <td>0.197872</td>\n",
              "      <td>0.307347</td>\n",
              "      <td>0.072249</td>\n",
              "      <td>-0.025709</td>\n",
              "      <td>0.060989</td>\n",
              "      <td>0.115094</td>\n",
              "      <td>-0.066474</td>\n",
              "      <td>-0.098095</td>\n",
              "      <td>0.084825</td>\n",
              "      <td>...</td>\n",
              "      <td>-0.025324</td>\n",
              "      <td>0.001211</td>\n",
              "      <td>-0.005614</td>\n",
              "      <td>-0.018240</td>\n",
              "      <td>0.008457</td>\n",
              "      <td>0.005622</td>\n",
              "      <td>-0.015000</td>\n",
              "      <td>0.001057</td>\n",
              "      <td>-0.003837</td>\n",
              "      <td>10</td>\n",
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              "    <tr>\n",
              "      <th>2</th>\n",
              "      <td>0.308483</td>\n",
              "      <td>-0.111703</td>\n",
              "      <td>0.184105</td>\n",
              "      <td>-0.105187</td>\n",
              "      <td>0.046082</td>\n",
              "      <td>-0.082734</td>\n",
              "      <td>0.114551</td>\n",
              "      <td>-0.052597</td>\n",
              "      <td>0.140994</td>\n",
              "      <td>0.199613</td>\n",
              "      <td>...</td>\n",
              "      <td>-0.000595</td>\n",
              "      <td>0.005860</td>\n",
              "      <td>0.007949</td>\n",
              "      <td>0.003431</td>\n",
              "      <td>0.016995</td>\n",
              "      <td>0.003550</td>\n",
              "      <td>0.002575</td>\n",
              "      <td>0.015602</td>\n",
              "      <td>-0.015437</td>\n",
              "      <td>11</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>3</th>\n",
              "      <td>-0.065622</td>\n",
              "      <td>0.019449</td>\n",
              "      <td>0.054963</td>\n",
              "      <td>0.006037</td>\n",
              "      <td>-0.031733</td>\n",
              "      <td>-0.038565</td>\n",
              "      <td>-0.128199</td>\n",
              "      <td>0.149893</td>\n",
              "      <td>-0.055611</td>\n",
              "      <td>-0.002084</td>\n",
              "      <td>...</td>\n",
              "      <td>-0.010139</td>\n",
              "      <td>0.025610</td>\n",
              "      <td>0.009239</td>\n",
              "      <td>0.026927</td>\n",
              "      <td>0.008300</td>\n",
              "      <td>0.013542</td>\n",
              "      <td>-0.006308</td>\n",
              "      <td>-0.019278</td>\n",
              "      <td>-0.019197</td>\n",
              "      <td>3</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>4</th>\n",
              "      <td>0.078273</td>\n",
              "      <td>-0.116391</td>\n",
              "      <td>0.048610</td>\n",
              "      <td>0.019842</td>\n",
              "      <td>-0.245833</td>\n",
              "      <td>-0.015016</td>\n",
              "      <td>0.065274</td>\n",
              "      <td>0.071805</td>\n",
              "      <td>-0.006330</td>\n",
              "      <td>-0.150230</td>\n",
              "      <td>...</td>\n",
              "      <td>0.011509</td>\n",
              "      <td>0.013127</td>\n",
              "      <td>0.001453</td>\n",
              "      <td>0.002497</td>\n",
              "      <td>-0.022562</td>\n",
              "      <td>0.001636</td>\n",
              "      <td>-0.000331</td>\n",
              "      <td>-0.008913</td>\n",
              "      <td>-0.015033</td>\n",
              "      <td>9</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>...</th>\n",
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              "      <td>...</td>\n",
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              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
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              "    <tr>\n",
              "      <th>1449</th>\n",
              "      <td>0.216166</td>\n",
              "      <td>-0.115107</td>\n",
              "      <td>0.100820</td>\n",
              "      <td>-0.048560</td>\n",
              "      <td>0.024996</td>\n",
              "      <td>-0.003196</td>\n",
              "      <td>0.060412</td>\n",
              "      <td>0.006417</td>\n",
              "      <td>-0.032015</td>\n",
              "      <td>0.315736</td>\n",
              "      <td>...</td>\n",
              "      <td>-0.006855</td>\n",
              "      <td>-0.018528</td>\n",
              "      <td>-0.018441</td>\n",
              "      <td>0.022852</td>\n",
              "      <td>0.003965</td>\n",
              "      <td>0.005031</td>\n",
              "      <td>-0.009335</td>\n",
              "      <td>-0.002795</td>\n",
              "      <td>-0.000721</td>\n",
              "      <td>5</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1450</th>\n",
              "      <td>-0.161563</td>\n",
              "      <td>-0.081903</td>\n",
              "      <td>-0.180353</td>\n",
              "      <td>-0.014879</td>\n",
              "      <td>0.017919</td>\n",
              "      <td>-0.030956</td>\n",
              "      <td>0.057535</td>\n",
              "      <td>0.219554</td>\n",
              "      <td>-0.067498</td>\n",
              "      <td>0.277966</td>\n",
              "      <td>...</td>\n",
              "      <td>-0.005349</td>\n",
              "      <td>-0.008725</td>\n",
              "      <td>0.015207</td>\n",
              "      <td>0.011005</td>\n",
              "      <td>0.007859</td>\n",
              "      <td>0.010024</td>\n",
              "      <td>-0.022676</td>\n",
              "      <td>-0.010384</td>\n",
              "      <td>0.004823</td>\n",
              "      <td>2</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1451</th>\n",
              "      <td>0.078718</td>\n",
              "      <td>0.087668</td>\n",
              "      <td>-0.026326</td>\n",
              "      <td>-0.115879</td>\n",
              "      <td>-0.032357</td>\n",
              "      <td>0.013690</td>\n",
              "      <td>-0.078774</td>\n",
              "      <td>0.026658</td>\n",
              "      <td>-0.158840</td>\n",
              "      <td>0.014747</td>\n",
              "      <td>...</td>\n",
              "      <td>-0.001172</td>\n",
              "      <td>-0.018661</td>\n",
              "      <td>-0.022077</td>\n",
              "      <td>-0.007993</td>\n",
              "      <td>-0.007495</td>\n",
              "      <td>-0.019063</td>\n",
              "      <td>0.017982</td>\n",
              "      <td>-0.003490</td>\n",
              "      <td>-0.022558</td>\n",
              "      <td>12</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1452</th>\n",
              "      <td>0.067811</td>\n",
              "      <td>-0.015062</td>\n",
              "      <td>-0.009813</td>\n",
              "      <td>-0.087383</td>\n",
              "      <td>0.027344</td>\n",
              "      <td>0.041840</td>\n",
              "      <td>-0.130139</td>\n",
              "      <td>0.061009</td>\n",
              "      <td>-0.062142</td>\n",
              "      <td>0.055143</td>\n",
              "      <td>...</td>\n",
              "      <td>0.020168</td>\n",
              "      <td>0.011859</td>\n",
              "      <td>0.007951</td>\n",
              "      <td>0.014574</td>\n",
              "      <td>0.007063</td>\n",
              "      <td>0.007196</td>\n",
              "      <td>-0.012238</td>\n",
              "      <td>0.003552</td>\n",
              "      <td>-0.004192</td>\n",
              "      <td>0</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1453</th>\n",
              "      <td>0.050070</td>\n",
              "      <td>-0.029314</td>\n",
              "      <td>0.015125</td>\n",
              "      <td>-0.059414</td>\n",
              "      <td>-0.082425</td>\n",
              "      <td>-0.001246</td>\n",
              "      <td>-0.015835</td>\n",
              "      <td>0.093750</td>\n",
              "      <td>-0.073875</td>\n",
              "      <td>0.060959</td>\n",
              "      <td>...</td>\n",
              "      <td>0.002604</td>\n",
              "      <td>0.000125</td>\n",
              "      <td>-0.012672</td>\n",
              "      <td>0.003668</td>\n",
              "      <td>-0.000319</td>\n",
              "      <td>0.001057</td>\n",
              "      <td>0.006436</td>\n",
              "      <td>0.002983</td>\n",
              "      <td>0.000374</td>\n",
              "      <td>3</td>\n",
              "    </tr>\n",
              "  </tbody>\n",
              "</table>\n",
              "<p>1454 rows × 960 columns</p>\n",
              "</div>"
            ],
            "text/plain": [
              "           PC1       PC2       PC3       PC4       PC5       PC6       PC7  \\\n",
              "0     0.119723  0.065268  0.079984 -0.236828  0.094082 -0.050585  0.021057   \n",
              "1    -0.250730  0.197872  0.307347  0.072249 -0.025709  0.060989  0.115094   \n",
              "2     0.308483 -0.111703  0.184105 -0.105187  0.046082 -0.082734  0.114551   \n",
              "3    -0.065622  0.019449  0.054963  0.006037 -0.031733 -0.038565 -0.128199   \n",
              "4     0.078273 -0.116391  0.048610  0.019842 -0.245833 -0.015016  0.065274   \n",
              "...        ...       ...       ...       ...       ...       ...       ...   \n",
              "1449  0.216166 -0.115107  0.100820 -0.048560  0.024996 -0.003196  0.060412   \n",
              "1450 -0.161563 -0.081903 -0.180353 -0.014879  0.017919 -0.030956  0.057535   \n",
              "1451  0.078718  0.087668 -0.026326 -0.115879 -0.032357  0.013690 -0.078774   \n",
              "1452  0.067811 -0.015062 -0.009813 -0.087383  0.027344  0.041840 -0.130139   \n",
              "1453  0.050070 -0.029314  0.015125 -0.059414 -0.082425 -0.001246 -0.015835   \n",
              "\n",
              "           PC8       PC9      PC10  ...     PC951     PC952     PC953  \\\n",
              "0    -0.003241  0.217338  0.023047  ... -0.010412 -0.015008 -0.014178   \n",
              "1    -0.066474 -0.098095  0.084825  ... -0.025324  0.001211 -0.005614   \n",
              "2    -0.052597  0.140994  0.199613  ... -0.000595  0.005860  0.007949   \n",
              "3     0.149893 -0.055611 -0.002084  ... -0.010139  0.025610  0.009239   \n",
              "4     0.071805 -0.006330 -0.150230  ...  0.011509  0.013127  0.001453   \n",
              "...        ...       ...       ...  ...       ...       ...       ...   \n",
              "1449  0.006417 -0.032015  0.315736  ... -0.006855 -0.018528 -0.018441   \n",
              "1450  0.219554 -0.067498  0.277966  ... -0.005349 -0.008725  0.015207   \n",
              "1451  0.026658 -0.158840  0.014747  ... -0.001172 -0.018661 -0.022077   \n",
              "1452  0.061009 -0.062142  0.055143  ...  0.020168  0.011859  0.007951   \n",
              "1453  0.093750 -0.073875  0.060959  ...  0.002604  0.000125 -0.012672   \n",
              "\n",
              "         PC954     PC955     PC956     PC957     PC958     PC959  cluster  \n",
              "0     0.009260 -0.007399  0.005691  0.019139 -0.013434  0.003987       11  \n",
              "1    -0.018240  0.008457  0.005622 -0.015000  0.001057 -0.003837       10  \n",
              "2     0.003431  0.016995  0.003550  0.002575  0.015602 -0.015437       11  \n",
              "3     0.026927  0.008300  0.013542 -0.006308 -0.019278 -0.019197        3  \n",
              "4     0.002497 -0.022562  0.001636 -0.000331 -0.008913 -0.015033        9  \n",
              "...        ...       ...       ...       ...       ...       ...      ...  \n",
              "1449  0.022852  0.003965  0.005031 -0.009335 -0.002795 -0.000721        5  \n",
              "1450  0.011005  0.007859  0.010024 -0.022676 -0.010384  0.004823        2  \n",
              "1451 -0.007993 -0.007495 -0.019063  0.017982 -0.003490 -0.022558       12  \n",
              "1452  0.014574  0.007063  0.007196 -0.012238  0.003552 -0.004192        0  \n",
              "1453  0.003668 -0.000319  0.001057  0.006436  0.002983  0.000374        3  \n",
              "\n",
              "[1454 rows x 960 columns]"
            ]
          },
          "execution_count": 16,
          "metadata": {},
          "output_type": "execute_result"
        }
      ],
      "source": [
        "# best number of clusters is 13 regarding the elbow method above\n",
        "\n",
        "kmeans = KMeans(n_clusters=13, random_state=42)\n",
        "kmeans.fit(tfidf_pca_df.drop(columns=['article_id'], errors='ignore'))\n",
        "\n",
        "# adding the cluster labels to the PCA DataFrame\n",
        "tfidf_pca_df['cluster'] = kmeans.labels_\n",
        "\n",
        "tfidf_pca_df"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 17,
      "metadata": {
        "id": "YsBegnHSWWqC"
      },
      "outputs": [],
      "source": [
        "tfidf_df['cluster'] = kmeans.labels_"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 26,
      "metadata": {},
      "outputs": [
        {
          "data": {
            "text/html": [
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              "<table border=\"1\" class=\"dataframe\">\n",
              "  <thead>\n",
              "    <tr style=\"text-align: right;\">\n",
              "      <th></th>\n",
              "      <th>PC1</th>\n",
              "      <th>PC2</th>\n",
              "      <th>PC3</th>\n",
              "      <th>PC4</th>\n",
              "      <th>PC5</th>\n",
              "      <th>PC6</th>\n",
              "      <th>PC7</th>\n",
              "      <th>PC8</th>\n",
              "      <th>PC9</th>\n",
              "      <th>PC10</th>\n",
              "      <th>...</th>\n",
              "      <th>PC952</th>\n",
              "      <th>PC953</th>\n",
              "      <th>PC954</th>\n",
              "      <th>PC955</th>\n",
              "      <th>PC956</th>\n",
              "      <th>PC957</th>\n",
              "      <th>PC958</th>\n",
              "      <th>PC959</th>\n",
              "      <th>cluster</th>\n",
              "      <th>dbscan_cluster</th>\n",
              "    </tr>\n",
              "  </thead>\n",
              "  <tbody>\n",
              "    <tr>\n",
              "      <th>0</th>\n",
              "      <td>0.119723</td>\n",
              "      <td>0.065268</td>\n",
              "      <td>0.079984</td>\n",
              "      <td>-0.236828</td>\n",
              "      <td>0.094082</td>\n",
              "      <td>-0.050585</td>\n",
              "      <td>0.021057</td>\n",
              "      <td>-0.003241</td>\n",
              "      <td>0.217338</td>\n",
              "      <td>0.023047</td>\n",
              "      <td>...</td>\n",
              "      <td>-0.015008</td>\n",
              "      <td>-0.014178</td>\n",
              "      <td>0.009260</td>\n",
              "      <td>-0.007399</td>\n",
              "      <td>0.005691</td>\n",
              "      <td>0.019139</td>\n",
              "      <td>-0.013434</td>\n",
              "      <td>0.003987</td>\n",
              "      <td>11</td>\n",
              "      <td>-1</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1</th>\n",
              "      <td>-0.250730</td>\n",
              "      <td>0.197872</td>\n",
              "      <td>0.307347</td>\n",
              "      <td>0.072249</td>\n",
              "      <td>-0.025709</td>\n",
              "      <td>0.060989</td>\n",
              "      <td>0.115094</td>\n",
              "      <td>-0.066474</td>\n",
              "      <td>-0.098095</td>\n",
              "      <td>0.084825</td>\n",
              "      <td>...</td>\n",
              "      <td>0.001211</td>\n",
              "      <td>-0.005614</td>\n",
              "      <td>-0.018240</td>\n",
              "      <td>0.008457</td>\n",
              "      <td>0.005622</td>\n",
              "      <td>-0.015000</td>\n",
              "      <td>0.001057</td>\n",
              "      <td>-0.003837</td>\n",
              "      <td>10</td>\n",
              "      <td>-1</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>2</th>\n",
              "      <td>0.308483</td>\n",
              "      <td>-0.111703</td>\n",
              "      <td>0.184105</td>\n",
              "      <td>-0.105187</td>\n",
              "      <td>0.046082</td>\n",
              "      <td>-0.082734</td>\n",
              "      <td>0.114551</td>\n",
              "      <td>-0.052597</td>\n",
              "      <td>0.140994</td>\n",
              "      <td>0.199613</td>\n",
              "      <td>...</td>\n",
              "      <td>0.005860</td>\n",
              "      <td>0.007949</td>\n",
              "      <td>0.003431</td>\n",
              "      <td>0.016995</td>\n",
              "      <td>0.003550</td>\n",
              "      <td>0.002575</td>\n",
              "      <td>0.015602</td>\n",
              "      <td>-0.015437</td>\n",
              "      <td>11</td>\n",
              "      <td>-1</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>3</th>\n",
              "      <td>-0.065622</td>\n",
              "      <td>0.019449</td>\n",
              "      <td>0.054963</td>\n",
              "      <td>0.006037</td>\n",
              "      <td>-0.031733</td>\n",
              "      <td>-0.038565</td>\n",
              "      <td>-0.128199</td>\n",
              "      <td>0.149893</td>\n",
              "      <td>-0.055611</td>\n",
              "      <td>-0.002084</td>\n",
              "      <td>...</td>\n",
              "      <td>0.025610</td>\n",
              "      <td>0.009239</td>\n",
              "      <td>0.026927</td>\n",
              "      <td>0.008300</td>\n",
              "      <td>0.013542</td>\n",
              "      <td>-0.006308</td>\n",
              "      <td>-0.019278</td>\n",
              "      <td>-0.019197</td>\n",
              "      <td>3</td>\n",
              "      <td>-1</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>4</th>\n",
              "      <td>0.078273</td>\n",
              "      <td>-0.116391</td>\n",
              "      <td>0.048610</td>\n",
              "      <td>0.019842</td>\n",
              "      <td>-0.245833</td>\n",
              "      <td>-0.015016</td>\n",
              "      <td>0.065274</td>\n",
              "      <td>0.071805</td>\n",
              "      <td>-0.006330</td>\n",
              "      <td>-0.150230</td>\n",
              "      <td>...</td>\n",
              "      <td>0.013127</td>\n",
              "      <td>0.001453</td>\n",
              "      <td>0.002497</td>\n",
              "      <td>-0.022562</td>\n",
              "      <td>0.001636</td>\n",
              "      <td>-0.000331</td>\n",
              "      <td>-0.008913</td>\n",
              "      <td>-0.015033</td>\n",
              "      <td>9</td>\n",
              "      <td>-1</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>...</th>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
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              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
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              "    <tr>\n",
              "      <th>1449</th>\n",
              "      <td>0.216166</td>\n",
              "      <td>-0.115107</td>\n",
              "      <td>0.100820</td>\n",
              "      <td>-0.048560</td>\n",
              "      <td>0.024996</td>\n",
              "      <td>-0.003196</td>\n",
              "      <td>0.060412</td>\n",
              "      <td>0.006417</td>\n",
              "      <td>-0.032015</td>\n",
              "      <td>0.315736</td>\n",
              "      <td>...</td>\n",
              "      <td>-0.018528</td>\n",
              "      <td>-0.018441</td>\n",
              "      <td>0.022852</td>\n",
              "      <td>0.003965</td>\n",
              "      <td>0.005031</td>\n",
              "      <td>-0.009335</td>\n",
              "      <td>-0.002795</td>\n",
              "      <td>-0.000721</td>\n",
              "      <td>5</td>\n",
              "      <td>-1</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1450</th>\n",
              "      <td>-0.161563</td>\n",
              "      <td>-0.081903</td>\n",
              "      <td>-0.180353</td>\n",
              "      <td>-0.014879</td>\n",
              "      <td>0.017919</td>\n",
              "      <td>-0.030956</td>\n",
              "      <td>0.057535</td>\n",
              "      <td>0.219554</td>\n",
              "      <td>-0.067498</td>\n",
              "      <td>0.277966</td>\n",
              "      <td>...</td>\n",
              "      <td>-0.008725</td>\n",
              "      <td>0.015207</td>\n",
              "      <td>0.011005</td>\n",
              "      <td>0.007859</td>\n",
              "      <td>0.010024</td>\n",
              "      <td>-0.022676</td>\n",
              "      <td>-0.010384</td>\n",
              "      <td>0.004823</td>\n",
              "      <td>2</td>\n",
              "      <td>-1</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1451</th>\n",
              "      <td>0.078718</td>\n",
              "      <td>0.087668</td>\n",
              "      <td>-0.026326</td>\n",
              "      <td>-0.115879</td>\n",
              "      <td>-0.032357</td>\n",
              "      <td>0.013690</td>\n",
              "      <td>-0.078774</td>\n",
              "      <td>0.026658</td>\n",
              "      <td>-0.158840</td>\n",
              "      <td>0.014747</td>\n",
              "      <td>...</td>\n",
              "      <td>-0.018661</td>\n",
              "      <td>-0.022077</td>\n",
              "      <td>-0.007993</td>\n",
              "      <td>-0.007495</td>\n",
              "      <td>-0.019063</td>\n",
              "      <td>0.017982</td>\n",
              "      <td>-0.003490</td>\n",
              "      <td>-0.022558</td>\n",
              "      <td>12</td>\n",
              "      <td>-1</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1452</th>\n",
              "      <td>0.067811</td>\n",
              "      <td>-0.015062</td>\n",
              "      <td>-0.009813</td>\n",
              "      <td>-0.087383</td>\n",
              "      <td>0.027344</td>\n",
              "      <td>0.041840</td>\n",
              "      <td>-0.130139</td>\n",
              "      <td>0.061009</td>\n",
              "      <td>-0.062142</td>\n",
              "      <td>0.055143</td>\n",
              "      <td>...</td>\n",
              "      <td>0.011859</td>\n",
              "      <td>0.007951</td>\n",
              "      <td>0.014574</td>\n",
              "      <td>0.007063</td>\n",
              "      <td>0.007196</td>\n",
              "      <td>-0.012238</td>\n",
              "      <td>0.003552</td>\n",
              "      <td>-0.004192</td>\n",
              "      <td>0</td>\n",
              "      <td>-1</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1453</th>\n",
              "      <td>0.050070</td>\n",
              "      <td>-0.029314</td>\n",
              "      <td>0.015125</td>\n",
              "      <td>-0.059414</td>\n",
              "      <td>-0.082425</td>\n",
              "      <td>-0.001246</td>\n",
              "      <td>-0.015835</td>\n",
              "      <td>0.093750</td>\n",
              "      <td>-0.073875</td>\n",
              "      <td>0.060959</td>\n",
              "      <td>...</td>\n",
              "      <td>0.000125</td>\n",
              "      <td>-0.012672</td>\n",
              "      <td>0.003668</td>\n",
              "      <td>-0.000319</td>\n",
              "      <td>0.001057</td>\n",
              "      <td>0.006436</td>\n",
              "      <td>0.002983</td>\n",
              "      <td>0.000374</td>\n",
              "      <td>3</td>\n",
              "      <td>-1</td>\n",
              "    </tr>\n",
              "  </tbody>\n",
              "</table>\n",
              "<p>1454 rows × 961 columns</p>\n",
              "</div>"
            ],
            "text/plain": [
              "           PC1       PC2       PC3       PC4       PC5       PC6       PC7  \\\n",
              "0     0.119723  0.065268  0.079984 -0.236828  0.094082 -0.050585  0.021057   \n",
              "1    -0.250730  0.197872  0.307347  0.072249 -0.025709  0.060989  0.115094   \n",
              "2     0.308483 -0.111703  0.184105 -0.105187  0.046082 -0.082734  0.114551   \n",
              "3    -0.065622  0.019449  0.054963  0.006037 -0.031733 -0.038565 -0.128199   \n",
              "4     0.078273 -0.116391  0.048610  0.019842 -0.245833 -0.015016  0.065274   \n",
              "...        ...       ...       ...       ...       ...       ...       ...   \n",
              "1449  0.216166 -0.115107  0.100820 -0.048560  0.024996 -0.003196  0.060412   \n",
              "1450 -0.161563 -0.081903 -0.180353 -0.014879  0.017919 -0.030956  0.057535   \n",
              "1451  0.078718  0.087668 -0.026326 -0.115879 -0.032357  0.013690 -0.078774   \n",
              "1452  0.067811 -0.015062 -0.009813 -0.087383  0.027344  0.041840 -0.130139   \n",
              "1453  0.050070 -0.029314  0.015125 -0.059414 -0.082425 -0.001246 -0.015835   \n",
              "\n",
              "           PC8       PC9      PC10  ...     PC952     PC953     PC954  \\\n",
              "0    -0.003241  0.217338  0.023047  ... -0.015008 -0.014178  0.009260   \n",
              "1    -0.066474 -0.098095  0.084825  ...  0.001211 -0.005614 -0.018240   \n",
              "2    -0.052597  0.140994  0.199613  ...  0.005860  0.007949  0.003431   \n",
              "3     0.149893 -0.055611 -0.002084  ...  0.025610  0.009239  0.026927   \n",
              "4     0.071805 -0.006330 -0.150230  ...  0.013127  0.001453  0.002497   \n",
              "...        ...       ...       ...  ...       ...       ...       ...   \n",
              "1449  0.006417 -0.032015  0.315736  ... -0.018528 -0.018441  0.022852   \n",
              "1450  0.219554 -0.067498  0.277966  ... -0.008725  0.015207  0.011005   \n",
              "1451  0.026658 -0.158840  0.014747  ... -0.018661 -0.022077 -0.007993   \n",
              "1452  0.061009 -0.062142  0.055143  ...  0.011859  0.007951  0.014574   \n",
              "1453  0.093750 -0.073875  0.060959  ...  0.000125 -0.012672  0.003668   \n",
              "\n",
              "         PC955     PC956     PC957     PC958     PC959  cluster  \\\n",
              "0    -0.007399  0.005691  0.019139 -0.013434  0.003987       11   \n",
              "1     0.008457  0.005622 -0.015000  0.001057 -0.003837       10   \n",
              "2     0.016995  0.003550  0.002575  0.015602 -0.015437       11   \n",
              "3     0.008300  0.013542 -0.006308 -0.019278 -0.019197        3   \n",
              "4    -0.022562  0.001636 -0.000331 -0.008913 -0.015033        9   \n",
              "...        ...       ...       ...       ...       ...      ...   \n",
              "1449  0.003965  0.005031 -0.009335 -0.002795 -0.000721        5   \n",
              "1450  0.007859  0.010024 -0.022676 -0.010384  0.004823        2   \n",
              "1451 -0.007495 -0.019063  0.017982 -0.003490 -0.022558       12   \n",
              "1452  0.007063  0.007196 -0.012238  0.003552 -0.004192        0   \n",
              "1453 -0.000319  0.001057  0.006436  0.002983  0.000374        3   \n",
              "\n",
              "      dbscan_cluster  \n",
              "0                 -1  \n",
              "1                 -1  \n",
              "2                 -1  \n",
              "3                 -1  \n",
              "4                 -1  \n",
              "...              ...  \n",
              "1449              -1  \n",
              "1450              -1  \n",
              "1451              -1  \n",
              "1452              -1  \n",
              "1453              -1  \n",
              "\n",
              "[1454 rows x 961 columns]"
            ]
          },
          "execution_count": 26,
          "metadata": {},
          "output_type": "execute_result"
        }
      ],
      "source": [
        "# use dbscan for clustering\n",
        "\n",
        "from sklearn.cluster import DBSCAN\n",
        "\n",
        "dbscan = DBSCAN(eps=0.5, min_samples=5)\n",
        "\n",
        "dbscan_clusters = dbscan.fit_predict(tfidf_pca_df.drop(columns=['article_id'], errors='ignore'))\n",
        "\n",
        "# add the cluster labels to the DataFrame\n",
        "\n",
        "tfidf_pca_df['dbscan_cluster'] = dbscan_clusters\n",
        "\n",
        "tfidf_pca_df"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {},
      "source": [
        "<div dir=rtl>\n",
        "\n",
        "<font color='yellow'>\n",
        "در این قسمت نیز با استفاده از dbscan و eps = 0.5 برای قسمت امتیازی خوشه بندی را انجام می‌دهیم و نتایج خوشه بندی آنرا را با نام ستون dbscan_cluster به دیتاست خود اضافه می کنیم \n",
        "<br>\n",
        "</div>"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 27,
      "metadata": {},
      "outputs": [
        {
          "data": {
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              "<div>\n",
              "<style scoped>\n",
              "    .dataframe tbody tr th:only-of-type {\n",
              "        vertical-align: middle;\n",
              "    }\n",
              "\n",
              "    .dataframe tbody tr th {\n",
              "        vertical-align: top;\n",
              "    }\n",
              "\n",
              "    .dataframe thead th {\n",
              "        text-align: right;\n",
              "    }\n",
              "</style>\n",
              "<table border=\"1\" class=\"dataframe\">\n",
              "  <thead>\n",
              "    <tr style=\"text-align: right;\">\n",
              "      <th></th>\n",
              "      <th>PC1</th>\n",
              "      <th>PC2</th>\n",
              "      <th>PC3</th>\n",
              "      <th>PC4</th>\n",
              "      <th>PC5</th>\n",
              "      <th>PC6</th>\n",
              "      <th>PC7</th>\n",
              "      <th>PC8</th>\n",
              "      <th>PC9</th>\n",
              "      <th>PC10</th>\n",
              "      <th>...</th>\n",
              "      <th>PC953</th>\n",
              "      <th>PC954</th>\n",
              "      <th>PC955</th>\n",
              "      <th>PC956</th>\n",
              "      <th>PC957</th>\n",
              "      <th>PC958</th>\n",
              "      <th>PC959</th>\n",
              "      <th>cluster</th>\n",
              "      <th>dbscan_cluster</th>\n",
              "      <th>agg_cluster</th>\n",
              "    </tr>\n",
              "  </thead>\n",
              "  <tbody>\n",
              "    <tr>\n",
              "      <th>0</th>\n",
              "      <td>0.119723</td>\n",
              "      <td>0.065268</td>\n",
              "      <td>0.079984</td>\n",
              "      <td>-0.236828</td>\n",
              "      <td>0.094082</td>\n",
              "      <td>-0.050585</td>\n",
              "      <td>0.021057</td>\n",
              "      <td>-0.003241</td>\n",
              "      <td>0.217338</td>\n",
              "      <td>0.023047</td>\n",
              "      <td>...</td>\n",
              "      <td>-0.014178</td>\n",
              "      <td>0.009260</td>\n",
              "      <td>-0.007399</td>\n",
              "      <td>0.005691</td>\n",
              "      <td>0.019139</td>\n",
              "      <td>-0.013434</td>\n",
              "      <td>0.003987</td>\n",
              "      <td>11</td>\n",
              "      <td>-1</td>\n",
              "      <td>8</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1</th>\n",
              "      <td>-0.250730</td>\n",
              "      <td>0.197872</td>\n",
              "      <td>0.307347</td>\n",
              "      <td>0.072249</td>\n",
              "      <td>-0.025709</td>\n",
              "      <td>0.060989</td>\n",
              "      <td>0.115094</td>\n",
              "      <td>-0.066474</td>\n",
              "      <td>-0.098095</td>\n",
              "      <td>0.084825</td>\n",
              "      <td>...</td>\n",
              "      <td>-0.005614</td>\n",
              "      <td>-0.018240</td>\n",
              "      <td>0.008457</td>\n",
              "      <td>0.005622</td>\n",
              "      <td>-0.015000</td>\n",
              "      <td>0.001057</td>\n",
              "      <td>-0.003837</td>\n",
              "      <td>10</td>\n",
              "      <td>-1</td>\n",
              "      <td>6</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>2</th>\n",
              "      <td>0.308483</td>\n",
              "      <td>-0.111703</td>\n",
              "      <td>0.184105</td>\n",
              "      <td>-0.105187</td>\n",
              "      <td>0.046082</td>\n",
              "      <td>-0.082734</td>\n",
              "      <td>0.114551</td>\n",
              "      <td>-0.052597</td>\n",
              "      <td>0.140994</td>\n",
              "      <td>0.199613</td>\n",
              "      <td>...</td>\n",
              "      <td>0.007949</td>\n",
              "      <td>0.003431</td>\n",
              "      <td>0.016995</td>\n",
              "      <td>0.003550</td>\n",
              "      <td>0.002575</td>\n",
              "      <td>0.015602</td>\n",
              "      <td>-0.015437</td>\n",
              "      <td>11</td>\n",
              "      <td>-1</td>\n",
              "      <td>8</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>3</th>\n",
              "      <td>-0.065622</td>\n",
              "      <td>0.019449</td>\n",
              "      <td>0.054963</td>\n",
              "      <td>0.006037</td>\n",
              "      <td>-0.031733</td>\n",
              "      <td>-0.038565</td>\n",
              "      <td>-0.128199</td>\n",
              "      <td>0.149893</td>\n",
              "      <td>-0.055611</td>\n",
              "      <td>-0.002084</td>\n",
              "      <td>...</td>\n",
              "      <td>0.009239</td>\n",
              "      <td>0.026927</td>\n",
              "      <td>0.008300</td>\n",
              "      <td>0.013542</td>\n",
              "      <td>-0.006308</td>\n",
              "      <td>-0.019278</td>\n",
              "      <td>-0.019197</td>\n",
              "      <td>3</td>\n",
              "      <td>-1</td>\n",
              "      <td>3</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>4</th>\n",
              "      <td>0.078273</td>\n",
              "      <td>-0.116391</td>\n",
              "      <td>0.048610</td>\n",
              "      <td>0.019842</td>\n",
              "      <td>-0.245833</td>\n",
              "      <td>-0.015016</td>\n",
              "      <td>0.065274</td>\n",
              "      <td>0.071805</td>\n",
              "      <td>-0.006330</td>\n",
              "      <td>-0.150230</td>\n",
              "      <td>...</td>\n",
              "      <td>0.001453</td>\n",
              "      <td>0.002497</td>\n",
              "      <td>-0.022562</td>\n",
              "      <td>0.001636</td>\n",
              "      <td>-0.000331</td>\n",
              "      <td>-0.008913</td>\n",
              "      <td>-0.015033</td>\n",
              "      <td>9</td>\n",
              "      <td>-1</td>\n",
              "      <td>5</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>...</th>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1449</th>\n",
              "      <td>0.216166</td>\n",
              "      <td>-0.115107</td>\n",
              "      <td>0.100820</td>\n",
              "      <td>-0.048560</td>\n",
              "      <td>0.024996</td>\n",
              "      <td>-0.003196</td>\n",
              "      <td>0.060412</td>\n",
              "      <td>0.006417</td>\n",
              "      <td>-0.032015</td>\n",
              "      <td>0.315736</td>\n",
              "      <td>...</td>\n",
              "      <td>-0.018441</td>\n",
              "      <td>0.022852</td>\n",
              "      <td>0.003965</td>\n",
              "      <td>0.005031</td>\n",
              "      <td>-0.009335</td>\n",
              "      <td>-0.002795</td>\n",
              "      <td>-0.000721</td>\n",
              "      <td>5</td>\n",
              "      <td>-1</td>\n",
              "      <td>1</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1450</th>\n",
              "      <td>-0.161563</td>\n",
              "      <td>-0.081903</td>\n",
              "      <td>-0.180353</td>\n",
              "      <td>-0.014879</td>\n",
              "      <td>0.017919</td>\n",
              "      <td>-0.030956</td>\n",
              "      <td>0.057535</td>\n",
              "      <td>0.219554</td>\n",
              "      <td>-0.067498</td>\n",
              "      <td>0.277966</td>\n",
              "      <td>...</td>\n",
              "      <td>0.015207</td>\n",
              "      <td>0.011005</td>\n",
              "      <td>0.007859</td>\n",
              "      <td>0.010024</td>\n",
              "      <td>-0.022676</td>\n",
              "      <td>-0.010384</td>\n",
              "      <td>0.004823</td>\n",
              "      <td>2</td>\n",
              "      <td>-1</td>\n",
              "      <td>12</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1451</th>\n",
              "      <td>0.078718</td>\n",
              "      <td>0.087668</td>\n",
              "      <td>-0.026326</td>\n",
              "      <td>-0.115879</td>\n",
              "      <td>-0.032357</td>\n",
              "      <td>0.013690</td>\n",
              "      <td>-0.078774</td>\n",
              "      <td>0.026658</td>\n",
              "      <td>-0.158840</td>\n",
              "      <td>0.014747</td>\n",
              "      <td>...</td>\n",
              "      <td>-0.022077</td>\n",
              "      <td>-0.007993</td>\n",
              "      <td>-0.007495</td>\n",
              "      <td>-0.019063</td>\n",
              "      <td>0.017982</td>\n",
              "      <td>-0.003490</td>\n",
              "      <td>-0.022558</td>\n",
              "      <td>12</td>\n",
              "      <td>-1</td>\n",
              "      <td>7</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1452</th>\n",
              "      <td>0.067811</td>\n",
              "      <td>-0.015062</td>\n",
              "      <td>-0.009813</td>\n",
              "      <td>-0.087383</td>\n",
              "      <td>0.027344</td>\n",
              "      <td>0.041840</td>\n",
              "      <td>-0.130139</td>\n",
              "      <td>0.061009</td>\n",
              "      <td>-0.062142</td>\n",
              "      <td>0.055143</td>\n",
              "      <td>...</td>\n",
              "      <td>0.007951</td>\n",
              "      <td>0.014574</td>\n",
              "      <td>0.007063</td>\n",
              "      <td>0.007196</td>\n",
              "      <td>-0.012238</td>\n",
              "      <td>0.003552</td>\n",
              "      <td>-0.004192</td>\n",
              "      <td>0</td>\n",
              "      <td>-1</td>\n",
              "      <td>11</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1453</th>\n",
              "      <td>0.050070</td>\n",
              "      <td>-0.029314</td>\n",
              "      <td>0.015125</td>\n",
              "      <td>-0.059414</td>\n",
              "      <td>-0.082425</td>\n",
              "      <td>-0.001246</td>\n",
              "      <td>-0.015835</td>\n",
              "      <td>0.093750</td>\n",
              "      <td>-0.073875</td>\n",
              "      <td>0.060959</td>\n",
              "      <td>...</td>\n",
              "      <td>-0.012672</td>\n",
              "      <td>0.003668</td>\n",
              "      <td>-0.000319</td>\n",
              "      <td>0.001057</td>\n",
              "      <td>0.006436</td>\n",
              "      <td>0.002983</td>\n",
              "      <td>0.000374</td>\n",
              "      <td>3</td>\n",
              "      <td>-1</td>\n",
              "      <td>3</td>\n",
              "    </tr>\n",
              "  </tbody>\n",
              "</table>\n",
              "<p>1454 rows × 962 columns</p>\n",
              "</div>"
            ],
            "text/plain": [
              "           PC1       PC2       PC3       PC4       PC5       PC6       PC7  \\\n",
              "0     0.119723  0.065268  0.079984 -0.236828  0.094082 -0.050585  0.021057   \n",
              "1    -0.250730  0.197872  0.307347  0.072249 -0.025709  0.060989  0.115094   \n",
              "2     0.308483 -0.111703  0.184105 -0.105187  0.046082 -0.082734  0.114551   \n",
              "3    -0.065622  0.019449  0.054963  0.006037 -0.031733 -0.038565 -0.128199   \n",
              "4     0.078273 -0.116391  0.048610  0.019842 -0.245833 -0.015016  0.065274   \n",
              "...        ...       ...       ...       ...       ...       ...       ...   \n",
              "1449  0.216166 -0.115107  0.100820 -0.048560  0.024996 -0.003196  0.060412   \n",
              "1450 -0.161563 -0.081903 -0.180353 -0.014879  0.017919 -0.030956  0.057535   \n",
              "1451  0.078718  0.087668 -0.026326 -0.115879 -0.032357  0.013690 -0.078774   \n",
              "1452  0.067811 -0.015062 -0.009813 -0.087383  0.027344  0.041840 -0.130139   \n",
              "1453  0.050070 -0.029314  0.015125 -0.059414 -0.082425 -0.001246 -0.015835   \n",
              "\n",
              "           PC8       PC9      PC10  ...     PC953     PC954     PC955  \\\n",
              "0    -0.003241  0.217338  0.023047  ... -0.014178  0.009260 -0.007399   \n",
              "1    -0.066474 -0.098095  0.084825  ... -0.005614 -0.018240  0.008457   \n",
              "2    -0.052597  0.140994  0.199613  ...  0.007949  0.003431  0.016995   \n",
              "3     0.149893 -0.055611 -0.002084  ...  0.009239  0.026927  0.008300   \n",
              "4     0.071805 -0.006330 -0.150230  ...  0.001453  0.002497 -0.022562   \n",
              "...        ...       ...       ...  ...       ...       ...       ...   \n",
              "1449  0.006417 -0.032015  0.315736  ... -0.018441  0.022852  0.003965   \n",
              "1450  0.219554 -0.067498  0.277966  ...  0.015207  0.011005  0.007859   \n",
              "1451  0.026658 -0.158840  0.014747  ... -0.022077 -0.007993 -0.007495   \n",
              "1452  0.061009 -0.062142  0.055143  ...  0.007951  0.014574  0.007063   \n",
              "1453  0.093750 -0.073875  0.060959  ... -0.012672  0.003668 -0.000319   \n",
              "\n",
              "         PC956     PC957     PC958     PC959  cluster  dbscan_cluster  \\\n",
              "0     0.005691  0.019139 -0.013434  0.003987       11              -1   \n",
              "1     0.005622 -0.015000  0.001057 -0.003837       10              -1   \n",
              "2     0.003550  0.002575  0.015602 -0.015437       11              -1   \n",
              "3     0.013542 -0.006308 -0.019278 -0.019197        3              -1   \n",
              "4     0.001636 -0.000331 -0.008913 -0.015033        9              -1   \n",
              "...        ...       ...       ...       ...      ...             ...   \n",
              "1449  0.005031 -0.009335 -0.002795 -0.000721        5              -1   \n",
              "1450  0.010024 -0.022676 -0.010384  0.004823        2              -1   \n",
              "1451 -0.019063  0.017982 -0.003490 -0.022558       12              -1   \n",
              "1452  0.007196 -0.012238  0.003552 -0.004192        0              -1   \n",
              "1453  0.001057  0.006436  0.002983  0.000374        3              -1   \n",
              "\n",
              "      agg_cluster  \n",
              "0               8  \n",
              "1               6  \n",
              "2               8  \n",
              "3               3  \n",
              "4               5  \n",
              "...           ...  \n",
              "1449            1  \n",
              "1450           12  \n",
              "1451            7  \n",
              "1452           11  \n",
              "1453            3  \n",
              "\n",
              "[1454 rows x 962 columns]"
            ]
          },
          "execution_count": 27,
          "metadata": {},
          "output_type": "execute_result"
        }
      ],
      "source": [
        "# apply hierarchical clustering\n",
        "\n",
        "from sklearn.cluster import AgglomerativeClustering\n",
        "\n",
        "agg = AgglomerativeClustering(n_clusters=13)\n",
        "\n",
        "agg_clusters = agg.fit_predict(tfidf_pca_df.drop(columns=['article_id'], errors='ignore'))\n",
        "\n",
        "# add the cluster labels to the DataFrame\n",
        "\n",
        "tfidf_pca_df['agg_cluster'] = agg_clusters\n",
        "\n",
        "tfidf_pca_df"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {},
      "source": [
        "<div dir=rtl>\n",
        "\n",
        "<font color='yellow'>\n",
        "همچنین در این قسمت نیز برای قسمت امتیازی خوشه بندی را با استفاده از روش hirearchical انجام می‌دهیم و نتایج آن را با تحت عنوان agg_cluster به دیتاست خود اضافه ‌میکنیم\n",
        "<br>\n",
        "</div>"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 28,
      "metadata": {},
      "outputs": [
        {
          "name": "stdout",
          "output_type": "stream",
          "text": [
            "0.024149668289760104\n",
            "0.4253596713645237\n",
            "0.4253596713645237\n",
            "-----------------\n",
            "14.173608808168405\n",
            "3794.808773482538\n",
            "3794.808773482538\n",
            "-----------------\n",
            "0.8084838258601819\n",
            "0.9698080129568574\n",
            "0.9698080129568571\n"
          ]
        }
      ],
      "source": [
        "# compare using silhouette score\n",
        "\n",
        "from sklearn.metrics import silhouette_score\n",
        "\n",
        "print(silhouette_score(tfidf_pca_df.drop(columns=['article_id'], errors='ignore'), dbscan_clusters))\n",
        "\n",
        "print(silhouette_score(tfidf_pca_df.drop(columns=['article_id'], errors='ignore'), kmeans.labels_))\n",
        "\n",
        "print(silhouette_score(tfidf_pca_df.drop(columns=['article_id'], errors='ignore'), agg_clusters))\n",
        "\n",
        "print('-----------------')\n",
        "\n",
        "# compare using calinski harabasz score\n",
        "\n",
        "print(metrics.calinski_harabasz_score(tfidf_pca_df.drop(columns=['article_id'], errors='ignore'), dbscan_clusters))\n",
        "\n",
        "print(metrics.calinski_harabasz_score(tfidf_pca_df.drop(columns=['article_id'], errors='ignore'), kmeans.labels_))\n",
        "\n",
        "print(metrics.calinski_harabasz_score(tfidf_pca_df.drop(columns=['article_id'], errors='ignore'), agg_clusters))\n",
        "\n",
        "print('-----------------')\n",
        "\n",
        "# compare using davies bouldin score\n",
        "\n",
        "print(metrics.davies_bouldin_score(tfidf_pca_df.drop(columns=['article_id'], errors='ignore'), dbscan_clusters))\n",
        "\n",
        "print(metrics.davies_bouldin_score(tfidf_pca_df.drop(columns=['article_id'], errors='ignore'), kmeans.labels_))\n",
        "\n",
        "print(metrics.davies_bouldin_score(tfidf_pca_df.drop(columns=['article_id'], errors='ignore'), agg_clusters))\n"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {},
      "source": [
        "<div dir=rtl>\n",
        "\n",
        "<font color='yellow'>\n",
        "در این قسمت نیز نتایج ۳ خوشه بندی را با استفاده از ۳ معیار silhouette و calinski_harabasz و davies_bouldin مقایسه میکنیم.\n",
        "\n",
        "نمره سیلوئت\n",
        "نمره سیلوئت میزان شباهت یک شیء به خوشه خودش را در مقایسه با سایر خوشه‌ها اندازه‌گیری می‌کند. این نمره در بازه -1 تا 1 قرار دارد و مقدار بالاتر نشان‌دهنده خوشه‌های بهتر تعریف شده است.\n",
        "\n",
        "\n",
        "\n",
        "نمره کالینسکی-هاراباز\n",
        "نمره کالینسکی-هاراباز که به عنوان معیار نسبت واریانس نیز شناخته می‌شود، تراکم و جدایی خوشه‌ها را ارزیابی می‌کند. نمره بالاتر نشان‌دهنده خوشه‌های بهتر تعریف شده است.\n",
        "\n",
        "\n",
        "\n",
        "\n",
        "نمره دیویس-بولدین\n",
        "نمره دیویس-بولدین میانگین نسبت شباهت هر خوشه با خوشه‌ای که بیشترین شباهت را دارد اندازه‌گیری می‌کند. نمره پایین‌تر نشان‌دهنده خوشه‌بندی بهتر است.\n",
        "\n",
        "\n",
        "تحلیل مقایسه‌ای\n",
        "نمره سیلوئت:\n",
        "\n",
        "KMeans و خوشه‌بندی تجمعی دارای نمره سیلوئت برابر با 0.4254 هستند که نشان‌دهنده خوشه‌های خوب تعریف شده است.\n",
        "نمره DBSCAN برابر با 0.0241 است که نشان‌دهنده تعریف ضعیف خوشه‌ها است، که ممکن است به حساسیت آن به نویز و داده‌های پرت مرتبط باشد.\n",
        "\n",
        "\n",
        "نمره کالینسکی-هاراباز:\n",
        "\n",
        "KMeans و خوشه‌بندی تجمعی هر دو نمره بالایی برابر با 3794.81 دارند که نشان‌دهنده تراکم و جدایی خوب خوشه‌ها است.\n",
        "نمره DBSCAN برابر با 14.17 است که عملکرد ضعیف‌تری در تشکیل خوشه‌های خوب تعریف شده نشان می‌دهد.\n",
        "\n",
        "\n",
        "نمره دیویس-بولدین:\n",
        "\n",
        "DBSCAN کمترین نمره دیویس-بولدین برابر با 0.8085 را دارد که نشان‌دهنده خوشه‌های فشرده‌تر و متمایزتر است.\n",
        "KMeans و خوشه‌بندی تجمعی نمره‌های برابر با 0.9698 دارند که بالاتر است و نشان‌دهنده خوشه‌های نسبتاً کمتر فشرده است.\n",
        "\n",
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        "\n",
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        "<font face=\"B Mitra\">\n",
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        "<font size=6>\n",
        "<b> t-SNE </b>\n",
        "<br>\n",
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        "<font size=5>\n",
        "t_SNE یک روش نظارت نشده غیر خطی است که برای اکتشاف و بصری‌سازی داده‌ها مورد استفاده قرار می‌گیرد.\n",
        "PCA یک روش کاهش ابعاد خطی است که در تلاش برای بیشینه کردن واریانس و حفظ فاصله‌های زیاد دوتایی‌ها از یکدیگر است. این امر می‌تواند منجر به بصری‌سازی ضعیف به ویژه هنگام کار با ساختارهای غیرخطی می‌شود. t-SNE  با حفظ فاصله‌های کم دوتایی‌ها یا شباهت محلی از PCA متمایز می‌شود. به بیان ساده‌تر، t-SNE به کاربر درکی از اینکه داده‌ها چگونه در فضای ابعاد بالا سازمان‌دهی شده‌اند را ارائه می‌کند. <br>\n",
        "با استفاده از t-SNE می توانیم بردار ویژگی هایی با ابعاد بالا را به 2 بعد کاهش دهیم.\n",
        "در این مجموعه داده در 2 بعد می توان توزیع مقالات را با استفاده از scatterplot نمایش داد. <br>\n",
        "برای تفکیک بصری موضوعات مختلف در نمودار بالا، با استفاده از خوشه هایی که در KMeans یافتید ، برای رنگ آمیزی خوشه های مختلف در مصورسازی خود میتوانید استفاده کنید.\n",
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        "عملکرد t-SNE بر پایه اصل دو مرحله‌ای است. در مرحله اول، t-SNE از یک ماتریس شباهت بین نمونه‌های ورودی استفاده می‌کند و احتمالات شرطی محاوره‌ها را برای هر زوج نمونه محاسبه می‌کند. این احتمالات شرطی نشان می‌دهند که چقدر احتمال دارد دو نمونه با هم در نمایش پایانی نزدیک به هم قرار بگیرند. سپس در مرحله دوم، با استفاده از یک تابع هزینه، t-SNE سعی می‌کند تا نمایشی تک بعدی یا دوبعدی را بسازد که نزدیک به احتمالات شرطی محاوره‌ها باشد."
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      "source": [
        "# Visualizing the clusters using t-SNE\n",
        "\n",
        "tsne = TSNE(n_components=2, random_state=42)\n",
        "\n",
        "# fit and transform the PCA DataFrame\n",
        "\n",
        "tfidf_pca_tsne = tsne.fit_transform(tfidf_pca_df.drop(columns=['article_id'], errors='ignore'))\n",
        "\n",
        "# create a DataFrame for the t-SNE results\n",
        "\n",
        "tsne_df = pd.DataFrame(tfidf_pca_tsne, columns=['x', 'y'])\n",
        "\n",
        "# add the cluster labels to the t-SNE DataFrame\n",
        "\n",
        "tsne_df['cluster'] = tfidf_pca_df['cluster']\n",
        "\n",
        "# plot the t-SNE results\n",
        "\n",
        "plt.figure(figsize=(10, 10))\n",
        "\n",
        "sns.scatterplot(x='x', y='y', hue='cluster', data=tsne_df, palette='tab10', legend='full')\n",
        "\n",
        "plt.title('t-SNE Visualization of Clusters')\n",
        "\n",
        "plt.show()"
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        "<font face=\"B Mitra\">\n",
        "<div dir=rtl>\n",
        "<font size=6>\n",
        "<b> مدلسازی موضوعی (Topic Modeling)</b>\n",
        "<br>\n",
        "<p align=\"justify\">\n",
        "<font size=5>\n",
        "اکنون سعی خواهیم کرد موضوعات کلیدی در هر خوشه را پیدا کنیم.\n",
        "<br>\n",
        " K-means مقالات را خوشه بندی کرد اما موضوعات را برچسب گذاری نکرد. از طریق مدل‌سازی موضوع، متوجه خواهیم شد که مهمترین اصطلاحات برای هر خوشه چیست. این کار با دادن کلمات کلیدی برای شناسایی سریع مضامین خوشه، معنای بیشتری به خوشه می بخشد.<br>\n",
        "برای مدلسازی موضوعی از الگوریتم های مختلفی نظیر NMF,LSA,LDA میتوان استفاده کرد.\n",
        "<br>\n",
        "تعداد موضوعاتی که از خوشه ها قصد دارید استخراج کنید، را به دلخواه انتخاب کنید.\n",
        "<br>\n",
        "با استفاده از روش (Latent Dirichlet allocation)LDA موضوعات مناسب را به تعداد موردنظر برای هر خوشه بیابید.\n",
        "سپس کلمات کلیدی هر موضوع برای خوشه موردنظر را چاپ کنید.\n",
        "<br><b> بخش امتیازی:</b> مدلسازی موضوعی با روشی غیر از LDA انجام دهید و موضوعات خوشه ها را در هردو روش با هم مقایسه کنید.\n",
        "\n",
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        "\n",
        "<font color='yellow'>\n",
        "توضیحات:\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "تحلیل یا «آنالیز تشخیصی خطی» (Linear Discriminant Analysis - LDA) یک روش آماری برای کاهش ابعاد یک مسئله و تشخیص دسته‌ها بوسیله بیشینه‌سازی نسبت «پراکندگی بین گروه‌ها» (Scatters between groups) به «درون گروه‌ها» (Scatters within groups) است.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "هدف از انجام آنالیز تشخیص خطی، پیدا کردن یک «تصویر» (Projection) یا «تبدیل» (Transformation) است\n",
        "، روی مجموعه داده\n",
        "A\n",
        " بطوری که بتواند نسبت «پراکندگی بین گروه‌ها» (Between Class) را به «پراکندگی درون گروه‌ها» (Within Class) داده‌های تبدیل شده، حداکثر کند.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "LDA یک مدل تولیدی (generative model) است که فرض می‌کند هر سند از ترکیبی از موضوعات مختلف تشکیل شده و هر موضوع نیز از توزیع خاصی از کلمات به وجود آمده است. هدف LDA این است که با توجه به کلمات موجود در اسناد، این موضوعات پنهان را کشف کند.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "فرآیند مدل‌سازی با LDA\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "LDA فرآیند تولیدی اسناد را به صورت زیر مدل می‌کند:\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "1. انتخاب توزیع موضوعات برای سند: برای هر سند، یک توزیع موضوعی از توزیع دیریکله انتخاب می‌شود.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "2. انتخاب موضوع برای هر کلمه: برای هر کلمه در سند، یک موضوع با توجه به توزیع موضوعی سند انتخاب می‌شود.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "3. انتخاب کلمه از موضوع: سپس یک کلمه از توزیع کلمات مربوط به موضوع انتخاب شده، انتخاب می‌شود.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "LDA از یک الگوریتم تکراری (iterative) برای به‌روزرسانی توزیع‌های موضوعات و کلمات استفاده می‌کند. دو روش رایج برای انجام این به‌روزرسانی‌ها عبارتند از:\n",
        "\n",
        "1. نمونه‌گیری گیبز (Gibbs Sampling): یک روش مونت‌کارلو مبتنی بر زنجیره مارکوف است که برای نمونه‌گیری از توزیع‌های احتمالی پیچیده استفاده می‌شود. این روش در LDA برای نمونه‌گیری از توزیع‌های موضوعات و کلمات استفاده می‌شود.\n",
        "2. بهینه‌سازی واریانسی (Variational Inference): این روش از بهینه‌سازی واریانسی برای تقریب توزیع‌های پشتی (posterior distributions) استفاده می‌کند.\n",
        "</div>\n"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "c_m9oKdE_fSm"
      },
      "source": [
        "<div dir=rtl>\n",
        "\n",
        "<font color='yellow'>\n",
        "توضیحات کد:\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "کد در یک حلقه for از 0 تا 4 (جمعا 5 خوشه) اجرا می‌شود.\n",
        "در هر تکرار از حلقه، عدد خوشه فعلی (0 تا 4) نمایش داده می‌شود.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "فیلتر کردن DataFrame برای خوشه فعلی:\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "cluster_df شامل سطرهایی از tfidf_df است که به خوشه جاری تعلق دارند. ستون cluster حذف می‌شود تا فقط داده‌های ویژگی‌های TF-IDF باقی بمانند.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "ایجاد و آموزش مدل LDA:\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "یک مدل LDA با 15 موضوع (تعداد موضوعات برابر با n_components=15) ایجاد می‌شود.\n",
        "مدل LDA با داده‌های cluster_df آموزش داده می‌شود (fit می‌شود).\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "نمایش موضوعات برای هر خوشه:\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "در هر خوشه، موضوعات کشف شده توسط مدل LDA نمایش داده می‌شوند.\n",
        "برای هر موضوع، 10 کلمه برتر (که با توجه به وزن‌هایشان مرتب شده‌اند) نمایش داده می‌شود. این کلمات بر اساس ویژگی‌های TF-IDF استخراج شده‌اند.\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "نمایش نتایج:\n",
        "<br>\n",
        "<font color='yellow'>\n",
        "کلمات برتر هر موضوع به صورت لیست نمایش داده می‌شوند.\n",
        "<br>\n",
        "</div>"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 19,
      "metadata": {
        "id": "By4_qAM_C_p0",
        "outputId": "5f6adc87-4692-4b3c-96dd-428af53ccf96"
      },
      "outputs": [
        {
          "name": "stdout",
          "output_type": "stream",
          "text": [
            "Cluster 0\n",
            "Topic 0:\n",
            "['toxic', 'hpi', 'cytotoxic', 'organ', 'disruption', 'compound', 'surfactant', 'fisher', 'smallpox', 'namely']\n",
            "Topic 1:\n",
            "['registered', 'compound', '2018', 'acquisition', 'manner', 'icg', 'plus', 'termed', 'diseases', 'mrnas']\n",
            "Topic 2:\n",
            "['plaque', 'useful', 'swabs', 'extraction', 'mathematical', 'mononuclear', 'compound', 'illness', 'usually', 'tracer']\n",
            "Topic 3:\n",
            "['toxins', 'file', 'concentrated', 'aerosols', 'aerosol', 'wildtype', 'transmembrane', 'participation', 'airborne', 'particle']\n",
            "Topic 4:\n",
            "['plaque', 'useful', 'swabs', 'extraction', 'mathematical', 'mononuclear', 'compound', 'illness', 'usually', 'tracer']\n",
            "Topic 5:\n",
            "['affinity', 'enzyme', 'growing', 'bind', 'chronic', 'syndromes', 'devices', 'wells', 'namely', 'antiviral']\n",
            "Topic 6:\n",
            "['outcomes', 'examination', 'fecal', 'disruption', 'beijing', 'washing', 'buffer', 'investigations', 'powerful', 'autopsy']\n",
            "Topic 7:\n",
            "['plaque', 'useful', 'swabs', 'extraction', 'mathematical', 'mononuclear', 'compound', 'illness', 'usually', 'tracer']\n",
            "Topic 8:\n",
            "['plaque', 'useful', 'swabs', 'extraction', 'mathematical', 'mononuclear', 'compound', 'illness', 'usually', 'tracer']\n",
            "Topic 9:\n",
            "['isolates', 'pathways', 'room', 'vein', 'donors', 'droplet', 'airflow', 'roles', 'venous', 'air']\n",
            "Topic 10:\n",
            "['diverse', 'typically', 'stored', 'strain', 'carrier', 'aureus', 'isolated', 'nanoparticles', 'persistence', 'carriers']\n",
            "Topic 11:\n",
            "['plaque', 'useful', 'swabs', 'extraction', 'mathematical', 'mononuclear', 'compound', 'illness', 'usually', 'tracer']\n",
            "Topic 12:\n",
            "['plaque', 'useful', 'swabs', 'extraction', 'mathematical', 'mononuclear', 'compound', 'illness', 'usually', 'tracer']\n",
            "Topic 13:\n",
            "['useful', 'user', 'copies', 'tracer', 'cold', 'utilizing', 'effects', 'lacking', 'localization', 'diseases']\n",
            "Topic 14:\n",
            "['mononuclear', 'compound', 'usually', 'commonly', 'tracer', 'illness', 'fisher', 'mask', 'extremely', 'easy']\n",
            "\n",
            "\n",
            "Cluster 1\n",
            "Topic 0:\n",
            "['diseases', 'accurately', 'shorter', 'management', 'placement', 'provided', 'donors', 'pairs', 'cdv', 'habitat']\n",
            "Topic 1:\n",
            "['airflow', 'ubiquitin', 'whether', 'catheter', 'cation', 'occasionally', 'cdv', 'fixed', 'infusion', 'fewer']\n",
            "Topic 2:\n",
            "['variables', 'clarify', 'practical', 'enrolled', 'recommend', 'induction', 'anesthesia', 'values', 'joint', 'features']\n",
            "Topic 3:\n",
            "['wildtype', 'aircraft', 'lacking', 'diseases', 'cattle', 'sporadic', 'utilizing', 'iav', 'calves', 'stay']\n",
            "Topic 4:\n",
            "['ie', 'protective', 'infecting', 'views', 'immediately', 'virulent', 'expressing', 'cell', 'mhv', 'cells']\n",
            "Topic 5:\n",
            "['link', 'situation', 'cohort', 'constitute', 'frame', '2016', 'od', '2017', 'cluster', 'ifnγ']\n",
            "Topic 6:\n",
            "['movement', 'safety', 'experiments', 'raw', 'whether', 'np', 'originally', 'ebv', 'nm', 'ccl5']\n",
            "Topic 7:\n",
            "['febrile', 'probability', 'suitable', 'accurately', 'exposure', 'assuming', 'grid', 'australia', 'hbv', 'hsct']\n",
            "Topic 8:\n",
            "['pathogenicity', 'bacterial', 'infl', 'downstream', 'tubular', 'ratios', 'ifng', 'episodes', 'hiv', 'inflammation']\n",
            "Topic 9:\n",
            "['nasal', 'proposed', 'values', 'substrates', 'crosssectional', 'difficult', 'acceptable', 'breathing', 'surfaces', 'mv']\n",
            "Topic 10:\n",
            "['depletion', 'gel', 'p0001', 'minutes', 'reduction', 'occurs', 'manner', 'closure', 'vaccinia', 'mv']\n",
            "Topic 11:\n",
            "['indicators', 'biosensor', 'failure', 'cattle', 'fall', 'emergence', 'rnase', 'phage', 'ph', 'hcov229e']\n",
            "Topic 12:\n",
            "['rnase', 'motifs', 'closure', 'uptake', 'simulation', 'supernatants', 'electron', 'grid', 'catheter', 'np']\n",
            "Topic 13:\n",
            "['expected', 'purposes', 'devices', '1981', 'resonance', 'operating', 'young', 'correction', 'nurses', 'schools']\n",
            "Topic 14:\n",
            "['rnase', 'motifs', 'closure', 'uptake', 'simulation', 'supernatants', 'electron', 'grid', 'catheter', 'np']\n",
            "\n",
            "\n",
            "Cluster 2\n",
            "Topic 0:\n",
            "['disease', 'ab', 'apoptosis', 'spleen', 'inflammation', 'spinal', 'dairy', 'compatible', 'respond', 'hcv']\n",
            "Topic 1:\n",
            "['powerful', 'contains', 'outbreak', 'tcells', 'room', 'icg', 'controversial', 'downstream', 'surface', 'environment']\n",
            "Topic 2:\n",
            "['hour', 'adverse', 'immunosuppressive', 'plaque', 'qol', 'dominant', 'infrastructure', 'done', 'transformed', 'controversial']\n",
            "Topic 3:\n",
            "['hospitalized', 'values', 'african', 'search', 'rats', 'easy', 'defined', 'nacl', 'time', 'drop']\n",
            "Topic 4:\n",
            "['temperature', 'cavity', 'shed', 'physiological', 'adjuvant', 'supplemental', 'nmr', 'nanoparticles', 'nausea', 'downstream']\n",
            "Topic 5:\n",
            "['003', 'geographic', 'medications', 'knockout', 'deletions', 'education', 'prevention', 'edema', 'retrospectively', 'question']\n",
            "Topic 6:\n",
            "['mhv', 'arabia', 'virulent', 'views', 'patient', 'infecting', 'saturation', 'mentioned', 'transmembrane', 'mers']\n",
            "Topic 7:\n",
            "['hospitalized', 'values', 'african', 'search', 'rats', 'easy', 'defined', 'nacl', 'time', 'drop']\n",
            "Topic 8:\n",
            "['plate', 'decade', '2019', 'effective', 'compliance', 'wt', 'pool', 'spp', 'utilizing', 'transformed']\n",
            "Topic 9:\n",
            "['border', 'ongoing', 'team', 'nanoparticles', 'appendix', 'calves', 'mammals', 'memory', 'personnel', 'follows']\n",
            "Topic 10:\n",
            "['clinicians', 'stable', 'question', 'attack', 'adults', 'hospitalization', 'serological', 'personnel', 'member', 'house']\n",
            "Topic 11:\n",
            "['multivariate', 'round', 'mucosa', 'ubiquitin', 'h3n2', 'cation', 'saudi', 'identical', 'infiltration', 'substrates']\n",
            "Topic 12:\n",
            "['hospitalized', 'values', 'african', 'search', 'rats', 'easy', 'defined', 'nacl', 'time', 'drop']\n",
            "Topic 13:\n",
            "['internal', 'identify', 'scans', 'schwann', 'plan', 'mesh', 'commonly', 'regulation', 'reproduction', 'prepared']\n",
            "Topic 14:\n",
            "['intestine', 'compound', 'member', 'physiological', 'spp', 'killing', 'ebv', 'shed', 'µl', 'hubei']\n",
            "\n",
            "\n",
            "Cluster 3\n",
            "Topic 0:\n",
            "['demand', 'understanding', 'tomography', 'handling', 'physical', 'helpful', 'condition', 'collection', 'hla', 'hrv']\n",
            "Topic 1:\n",
            "['spleen', 'marrow', 'ge', 'chemokines', 'chest', 'ards', 'os', 'adjuvant', 'task', 'h5n1']\n",
            "Topic 2:\n",
            "['tnf', 'tumors', 'lifethreatening', 'iga', 'tcell', 'tb', 'il1', 'igg', 'patterns', 'p001']\n",
            "Topic 3:\n",
            "['animals', 'sampled', 'uses', 'primer', '10', 'amplification', 'detecting', 'dmy', 'al', 'estimation']\n",
            "Topic 4:\n",
            "['fewer', 'plus', 'mhc', 'fixed', 'sarscov', 'cmt', 'cation', 'hazard', 'habitat', 'vulnerable']\n",
            "Topic 5:\n",
            "['lane', 'government', 'immunological', 'igg', 'aqueous', 'pbs', 'fine', 'dmvs', 'sdspage', 'biosensor']\n",
            "Topic 6:\n",
            "['vaccines', 'cd4', 'companies', 'cd8', '3c', 'hct', 'ratios', 'zoonotic', 'fine', 'rt']\n",
            "Topic 7:\n",
            "['peak', 'mr', 'figures', 'crystal', 'biomarker', 'cytotoxicity', 'biomarkers', 'crosssectional', 'tail', 'cancer']\n",
            "Topic 8:\n",
            "['piglets', 'pcr', 'elimination', 'herd', 'vaccination', 'gender', 'isolated', 'iav', 'sequenced', 'strain']\n",
            "Topic 9:\n",
            "['icg', 'evolved', 'spreading', 'devices', 'private', 'plant', 'hypothesized', 'bal', 'plans', 'timing']\n",
            "Topic 10:\n",
            "['postoperative', 'institutional', 'inhibited', 'cities', 'pharmaceutical', 'kidney', 'coronary', 'avian', 'mrnas', 'iav']\n",
            "Topic 11:\n",
            "['ari', 'equations', 'sarscov', 'rbc', 'allele', 'lockdown', 'vital', 'alleles', 'locations', 'rural']\n",
            "Topic 12:\n",
            "['hsv', 'intrinsic', 'ebov', 'experiments', 'either', 'crystal', 'work', 'adherence', 'professional', 'hsp90']\n",
            "Topic 13:\n",
            "['conduction', 'algorithm', 'related', 'primers', 'saturation', 'collaboration', 'journal', 'hormone', 'pig', 'pediatric']\n",
            "Topic 14:\n",
            "['clinical', 'risks', 'calves', 'primary', 'positions', 'virulent', 'sampled', 'rtlamp', 'pc', 'dog']\n",
            "\n",
            "\n",
            "Cluster 4\n",
            "Topic 0:\n",
            "['superior', 'cytometry', 'diagnosed', 'findings', 'correct', 'emissions', 'apparatus', 'substantially', 'mucosal', 'probably']\n",
            "Topic 1:\n",
            "['superior', 'cytometry', 'diagnosed', 'findings', 'correct', 'emissions', 'apparatus', 'substantially', 'mucosal', 'probably']\n",
            "Topic 2:\n",
            "['superior', 'cytometry', 'diagnosed', 'findings', 'correct', 'emissions', 'apparatus', 'substantially', 'mucosal', 'probably']\n",
            "Topic 3:\n",
            "['decreasing', 'affects', 'granted', 'sections', '10000', 'slow', 'australia', 'canada', 'junction', 'index']\n",
            "Topic 4:\n",
            "['microbiological', 'tail', 'elimination', 'four', 'neutral', 'southern', 'igg1', 'antibodies', 'ige', 'positively']\n",
            "Topic 5:\n",
            "['covered', 'gramnegative', 'hmpv', '2020', 'copy', 'permeability', 'authorfunder', 'medium', 'library', 'preparedness']\n",
            "Topic 6:\n",
            "['example', 'complex', 'volunteers', 'nature', 'loop', 'outer', 'pronounced', 'breath', 'solution', 'treatments']\n",
            "Topic 7:\n",
            "['airborne', 'concern', 'purpose', 'subcutaneous', 'anxiety', 'deposition', 'hcv', 'paired', 'sera', 'mask']\n",
            "Topic 8:\n",
            "['superior', 'cytometry', 'diagnosed', 'findings', 'correct', 'emissions', 'apparatus', 'substantially', 'mucosal', 'probably']\n",
            "Topic 9:\n",
            "['probably', 'waste', 'rd', 'polymorphisms', 'inactivated', 'μgml', 'mitochondrial', 'heart', 'gag', 'zoonotic']\n",
            "Topic 10:\n",
            "['gender', 'reading', 'transcribed', 'generation', 'genetics', 'hospitals', 'transcription', 'written', 'mri', 'promote']\n",
            "Topic 11:\n",
            "['contains', 'airflow', 'drop', 'concentration', 'donors', 'condition', 'false', 'aerosol', 'gap', 'toxins']\n",
            "Topic 12:\n",
            "['together', 'neural', 'unrelated', 'eliminate', 'transition', 'injury', 'postoperative', 'intestine', 'members', 'interference']\n",
            "Topic 13:\n",
            "['anterior', 'purification', 'medicine', 'tlr4', 'specified', 'myocardial', 'pure', 'mrnas', 'purchased', 'coinfections']\n",
            "Topic 14:\n",
            "['overlapping', 'steps', 'suppression', 'hybridization', 'verified', 'utilizing', 'integration', 'etc', 'marrow', 'mask']\n",
            "\n",
            "\n"
          ]
        }
      ],
      "source": [
        "# train LDA Model on the tfidf for topic modeling for each cluster\n",
        "\n",
        "for cluster in range(5):\n",
        "    print(f'Cluster {cluster}')\n",
        "    cluster_df = tfidf_df[tfidf_df['cluster'] == cluster].drop(columns=['cluster'], errors='ignore')\n",
        "    lda = LatentDirichletAllocation(n_components=15, random_state=42)\n",
        "    lda.fit(cluster_df)\n",
        "    for i, topic in enumerate(lda.components_):\n",
        "        print(f'Topic {i}:')\n",
        "        print([tfidf_vectorizer.get_feature_names_out()[index] for index in topic.argsort()[-10:]])\n",
        "    print('\\n')"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 29,
      "metadata": {},
      "outputs": [
        {
          "name": "stdout",
          "output_type": "stream",
          "text": [
            "Cluster 0\n",
            "Topic 0:\n",
            "['aerosol', 'wildtype', 'airflow', 'roles', 'venous', 'transmembrane', 'participation', 'airborne', 'particle', 'air']\n",
            "Topic 1:\n",
            "['directed', 'airflow', 'venous', 'vein', 'roles', 'disorders', 'gap', 'building', 'toxins', 'wildtype']\n",
            "Topic 2:\n",
            "['driven', 'filter', 'presents', 'green', 'efficacy', 'filters', 'namely', 'participation', 'file', 'particle']\n",
            "Topic 3:\n",
            "['p53', 'dust', 'room', 'presents', 'move', 'airflow', 'isolates', 'air', 'roles', 'donors']\n",
            "Topic 4:\n",
            "['health', 'filters', 'p53', 'surgery', 'protected', 'presents', 'smallpox', 'file', 'donors', 'wildtype']\n",
            "Topic 5:\n",
            "['half', 'handling', 'persistence', 'environment', 'duration', 'icg', 'carriers', 'mrnas', 'contaminated', 'diseases']\n",
            "Topic 6:\n",
            "['presents', 'transmembrane', 'p53', 'driven', 'efficacy', 'airborne', 'filter', 'donors', 'filters', 'file']\n",
            "Topic 7:\n",
            "['roles', 'wildtype', 'room', 'mrnas', 'aerosols', 'diseases', 'isolates', 'pathways', 'airborne', 'µl']\n",
            "Topic 8:\n",
            "['zikv', 'file', 'laboratories', 'powerful', 'venous', 'clean', 'contains', 'sampling', 'area', 'autopsy']\n",
            "Topic 9:\n",
            "['estimation', 'al', 'protected', 'mask', 'uptake', 'diseases', 'smallpox', 'airborne', 'surgery', 'duration']\n",
            "Topic 10:\n",
            "['uptake', 'area', 'sampling', 'sporadic', 'particle', 'consumption', 'autopsy', 'green', 'transmembrane', 'duration']\n",
            "Topic 11:\n",
            "['clean', 'powerful', 'green', 'icg', 'mrnas', 'area', 'costs', 'droplet', 'autopsy', 'diseases']\n",
            "Topic 12:\n",
            "['suspected', 'particle', 'followup', 'donors', 'handling', 'autopsy', 'sporadic', 'carriers', 'green', 'airborne']\n",
            "Topic 13:\n",
            "['handling', 'roles', 'uptake', 'aerosols', 'carriers', 'aerosol', 'isolates', 'airborne', 'µl', 'duration']\n",
            "Topic 14:\n",
            "['suppression', 'cough', 'duration', 'consumption', 'presents', 'beds', 'venous', 'path', 'droplet', 'costs']\n",
            "\n",
            "\n",
            "Cluster 1\n",
            "Topic 0:\n",
            "['ie', 'protective', 'infecting', 'views', 'immediately', 'virulent', 'expressing', 'cell', 'mhv', 'cells']\n",
            "Topic 1:\n",
            "['nitrogen', 'mhc', 'written', 'cmv', 'physiological', 'cd4', 'fields', 'cd8', 'cells', 'mhv']\n",
            "Topic 2:\n",
            "['hct', 'views', 'hiv', 'cd4', 'ifnγ', 'antiviral', 'two', 'cells', 'ifng', 'ie']\n",
            "Topic 3:\n",
            "['peptide', 'delivered', 'response', 'vaccination', 'vaccine', 'antigen', 'virulent', 'people', 'immediately', 'mhv']\n",
            "Topic 4:\n",
            "['signal', 'inflammation', 'il2', 'ifnγ', 'two', 'mhv', 'luciferase', 'ifng', 'ace2', 'ie']\n",
            "Topic 5:\n",
            "['influences', 'physiological', 'zhang', 'infecting', 'written', 'replicates', 'views', 'mhv', 'virulent', 'ace2']\n",
            "Topic 6:\n",
            "['protective', 'ampk', 'known', 'zhang', 'signal', 'lowest', 'written', 'macrophage', 'mhv', 'autophagy']\n",
            "Topic 7:\n",
            "['namely', 'peptide', 'sirna', 'people', 'delivered', 'ie', 'ace2', 'sir', 'mhv', 'exon']\n",
            "Topic 8:\n",
            "['figs', 'h3n2', 'september', 'sirna', 'virulent', 'sir', 'downstream', 'influences', 'luciferase', 'exon']\n",
            "Topic 9:\n",
            "['hospitals', 'infecting', 'immediately', 'nitrogen', 'cells', 'luciferase', 'cd4', 'cd8', 'autophagy', 'exon']\n",
            "Topic 10:\n",
            "['demonstrating', 'older', 'brain', 'autophagy', 'demyelinating', 'ie', 'ratios', 'cmv', 'mva', 'exon']\n",
            "Topic 11:\n",
            "['protein', 'cd11b', 'adhesion', 'living', 'recently', 'hbov', 'cell', 'phosphate', 'mhv', 'nitrogen']\n",
            "Topic 12:\n",
            "['surfaces', 'published', 'autophagy', 'ie', 'missing', 'sir', 'cd8', 'namely', 'apoptosis', 'luciferase']\n",
            "Topic 13:\n",
            "['expressing', 'tnfa', 'lowest', 'influences', 'il2', 'sir', 'hiv', 'hbov', 'cd8', 'cd4']\n",
            "Topic 14:\n",
            "['rhinovirus', 'lymphocyte', 'mhc', 'ace2', 'cterminal', 'physiological', 'macrophage', 'live', 'hbov', 'nitrogen']\n",
            "\n",
            "\n",
            "Cluster 2\n",
            "Topic 0:\n",
            "['cases', 'virulent', 'views', 'arabia', 'patient', 'mentioned', 'infecting', 'saturation', 'transmembrane', 'mers']\n",
            "Topic 1:\n",
            "['protective', 'expressing', 'animals', 'luciferase', 'glucose', 'rbc', 'views', 'cells', 'fields', 'mhv']\n",
            "Topic 2:\n",
            "['qol', 'patient', 'dominant', 'infrastructure', 'done', 'pathways', 'transformed', 'mentioned', 'controversial', 'plaque']\n",
            "Topic 3:\n",
            "['patient', 'transmembrane', 'mentioned', 'antiviral', 'inhibitor', 'infiltration', 'sampling', 'resection', 'sars', 'substrates']\n",
            "Topic 4:\n",
            "['inhibitor', 'antibodies', 'ubiquitin', 'h3n2', 'transmembrane', 'transformed', 'resection', 'infiltration', 'plaque', 'substrates']\n",
            "Topic 5:\n",
            "['arabia', 'patient', 'cation', 'ubiquitin', 'saturation', 'h3n2', 'identical', 'infiltration', 'mhv', 'substrates']\n",
            "Topic 6:\n",
            "['antibodies', 'mentioned', 'sampled', 'consumption', 'infiltration', 'sequenced', 'rtlamp', 'glucose', 'rbc', 'substrates']\n",
            "Topic 7:\n",
            "['complementary', 'hospitals', 'strain', 'gender', 'evolution', 'phosphorylation', '4b', '4a', 'mentioned', 'sequenced']\n",
            "Topic 8:\n",
            "['education', 'retrospectively', 'edema', 'inform', 'course', 'question', 'respond', 'know', 'mentioned', 'hcv']\n",
            "Topic 9:\n",
            "['antiviral', 'mhv', 'sampling', 'rhinovirus', 'protective', 'saudi', 'ige', 'glucose', 'rbc', 'mentioned']\n",
            "Topic 10:\n",
            "['migration', 'plaque', 'nose', 'health', 'compatible', 'infecting', 'spp', 'zone', 'mhv', 'transmembrane']\n",
            "Topic 11:\n",
            "['downstream', 'icg', 'surveillance', 'consumption', 'emergency', 'surface', 'mentioned', 'environment', 'respond', 'hcv']\n",
            "Topic 12:\n",
            "['surveillance', '4b', 'transformed', 'rtlamp', 'consumption', '4a', 'emergency', 'sequenced', 'respond', 'hcv']\n",
            "Topic 13:\n",
            "['know', 'coronaviruses', 'question', 'hcv', '4a', '4b', 'animals', 'al', 'estimation', 'downstream']\n",
            "Topic 14:\n",
            "['mentioned', 'coronaviruses', 'salmonella', 'prevention', 'edema', 'hubei', 'retrospectively', 'consumption', 'rtlamp', 'question']\n",
            "\n",
            "\n",
            "Cluster 3\n",
            "Topic 0:\n",
            "['assay', 'cats', 'detecting', 'dog', 'rtlamp', 'dmy', 'al', 'estimation', 'pc', 'sampled']\n",
            "Topic 1:\n",
            "['significantly', 'pig', 'february', 'calves', 'feces', 'pediatric', 'cat', 'animals', 'dog', 'cats']\n",
            "Topic 2:\n",
            "['detecting', 'amplification', 'dmy', 'lacking', 'pc', 'feeding', 'cat', 'fine', 'feces', 'cats']\n",
            "Topic 3:\n",
            "['significantly', 'treating', 'calves', 'clinical', 'crosssectional', 'cdv', 'animals', 'canine', 'documented', 'dog']\n",
            "Topic 4:\n",
            "['rt', 'egfr', 'strain', 'dog', 'isolated', 'avian', 'vaccination', 'birds', 'chickens', 'iav']\n",
            "Topic 5:\n",
            "['documented', 'primer', 'assay', 'estimation', 'al', 'pediatric', 'cdv', 'rtlamp', 'dog', 'rt']\n",
            "Topic 6:\n",
            "['hepatocytes', 'cattle', 'calf', 'rtlamp', 'herd', 'covs', 'al', 'estimation', 'rt', 'calves']\n",
            "Topic 7:\n",
            "['february', 'animals', 'interviews', 'dmy', 'diameter', 'rt', 'pig', 'lacking', 'pediatric', 'calves']\n",
            "Topic 8:\n",
            "['proximity', 'piglets', 'estimation', 'al', 'military', 'dmy', 'hepatocytes', 'pcr', 'herd', 'lacking']\n",
            "Topic 9:\n",
            "['tail', 'septic', 'diameter', 'strain', 'dmy', 'isolated', 'sequenced', 'pc', 'calves', 'pcr']\n",
            "Topic 10:\n",
            "['sequenced', 'pediatric', 'sequencing', 'diameter', 'iav', 'february', 'positions', 'lacking', 'elimination', 'sampled']\n",
            "Topic 11:\n",
            "['waste', 'hepatocytes', 'mrsa', 'sensitivity', 'suppression', 'detecting', 'herd', 'rt', 'pcr', 'biosensor']\n",
            "Topic 12:\n",
            "['calves', 'pediatric', 'dog', 'cdv', 'sdspage', 'iav', 'elimination', 'biosensor', 'estimation', 'al']\n",
            "Topic 13:\n",
            "['daily', 'pc', 'real', 'assays', 'rtlamp', 'animals', 'military', 'hepatocytes', 'iav', 'herd']\n",
            "Topic 14:\n",
            "['feces', 'fecal', 'genomic', 'μgml', 'february', 'dmy', 'skills', 'animals', 'pcr', 'birds']\n",
            "\n",
            "\n",
            "Cluster 4\n",
            "Topic 0:\n",
            "['covered', '2020', 'gramnegative', 'hmpv', 'copy', 'permeability', 'authorfunder', 'medium', 'library', 'preparedness']\n",
            "Topic 1:\n",
            "['loci', '2020', 'cities', 'mode', 'nucleus', 'contribution', 'wt', 'enzymes', 'covered', 'cases']\n",
            "Topic 2:\n",
            "['reverse', 'clinical', 'positively', 'symptomatic', 'right', 'pedv', 'certified', 'sarscov', 'patient', 'covered']\n",
            "Topic 3:\n",
            "['mask', 'trauma', 'location', 'china', 'patient', 'sarscov', 'cases', 'hsv1', 'wt', 'cities']\n",
            "Topic 4:\n",
            "['figs', 'april', 'views', 'mask', 'risks', 'sampled', 'sustained', 'zoonotic', 'tested', 'sarscov']\n",
            "Topic 5:\n",
            "['certified', 'pedv', 'cities', 'hsv1', 'vero', 'patient', 'april', 'wt', 'post', '2020']\n",
            "Topic 6:\n",
            "['brazil', 'contribution', 'icg', 'mask', 'ccbyncnd', 'library', 'sarscov', '2020', 'internal', 'beds']\n",
            "Topic 7:\n",
            "['containing', 'cities', '95', 'morphology', 'april', 'ci', 'sarscov', 'covered', 'snps', 'distance']\n",
            "Topic 8:\n",
            "['etc', 'risks', 'loci', 'beds', 'distance', 'cities', 'marrow', 'patient', 'contribution', 'mask']\n",
            "Topic 9:\n",
            "['containing', 'cases', 'junction', 'active', 'loci', 'icg', 'index', '95', 'beds', 'ci']\n",
            "Topic 10:\n",
            "['beds', 'mri', 'infect', 'pe', 'promote', 'infecting', 'brazil', 'fields', 'ihc', 'loci']\n",
            "Topic 11:\n",
            "['ibv', 'city', 'treatments', 'age', 'rate', 'tested', 'morphology', 'contribution', 'cities', 'covered']\n",
            "Topic 12:\n",
            "['contribution', 'symptom', 'strict', 'prophylaxis', 'snps', 'icg', 'enzymes', 'cases', 'distance', 'asymptomatic']\n",
            "Topic 13:\n",
            "['city', 'poorly', 'permeability', 'brazil', 'asymptomatic', 'marrow', 'loci', 'medium', 'enzymes', 'mask']\n",
            "Topic 14:\n",
            "['day', 'positively', 'brazil', 'online', 'paired', 'zoonotic', 'beds', 'april', 'sera', 'interstitial']\n",
            "\n",
            "\n",
            "Cluster 0\n",
            "Topic 0:\n",
            "['roles', 'flexible', 'zikv', 'particle', 'vzv', 'vein', 'participation', 'airflow', 'ml', 'air']\n",
            "Topic 1:\n",
            "['venous', 'roles', 'vein', 'heavy', 'directed', 'disorders', 'gap', 'building', 'toxins', 'wildtype']\n",
            "Topic 2:\n",
            "['round', 'drop', 'aerosol', 'droplet', 'aerosols', 'influences', 'route', 'air', 'airborne', 'transmembrane']\n",
            "Topic 3:\n",
            "['smallpox', 'airflow', 'room', 'p53', 'dust', 'move', 'presents', 'air', 'roles', 'donors']\n",
            "Topic 4:\n",
            "['particle', 'subjected', 'work', 'fisher', 'health', 'participation', 'mask', 'protected', 'smallpox', 'surgery']\n",
            "Topic 5:\n",
            "['health', 'termed', 'transmembrane', 'contaminated', 'pathways', 'environment', 'room', 'icg', 'mrnas', 'diseases']\n",
            "Topic 6:\n",
            "['loaded', 'presents', 'aerosols', 'particle', 'aerosol', 'driven', 'efficacy', 'filter', 'filters', 'file']\n",
            "Topic 7:\n",
            "['aureus', 'transgenic', 'isolated', 'half', 'nanoparticles', 'followup', 'persistence', 'handling', 'contaminated', 'carriers']\n",
            "Topic 8:\n",
            "['zikv', 'investigations', 'gap', 'contains', 'laboratories', 'clean', 'powerful', 'sampling', 'area', 'autopsy']\n",
            "Topic 9:\n",
            "['window', 'plus', 'source', 'areas', 'estimation', 'air', 'al', 'concentrated', 'uptake', 'duration']\n",
            "Topic 10:\n",
            "['handling', 'respectively', 'drop', 'larvae', 'μl', 'mouse', 'aerosol', 'cough', 'costs', 'droplet']\n",
            "Topic 11:\n",
            "['detecting', 'estimation', 'al', 'virulent', 'suspected', 'sporadic', 'namely', 'green', 'participation', 'particle']\n",
            "Topic 12:\n",
            "['economic', 'concentrated', 'sought', 'air', 'bed', 'disorders', 'path', 'beds', 'venous', 'airborne']\n",
            "Topic 13:\n",
            "['aerosol', 'presents', 'aerosols', 'roles', 'air', 'participation', 'pathways', 'isolates', 'particle', 'µl']\n",
            "Topic 14:\n",
            "['matched', 'rat', 'venous', 'contains', 'rise', 'surface', 'transmembrane', 'indices', 'suppression', 'consumption']\n",
            "\n",
            "\n",
            "Cluster 1\n",
            "Topic 0:\n",
            "['missing', 'cancer', 'apoptosis', 'phosphate', 'cultural', 'fields', 'nitrogen', 'expressing', 'cell', 'cells']\n",
            "Topic 1:\n",
            "['live', 'infecting', 'mhc', 'zhang', 'cells', 'virulent', 'known', 'fields', 'written', 'mhv']\n",
            "Topic 2:\n",
            "['hct', 'vs', 'expressing', 'signal', 'antiviral', 'cells', 'ifnγ', 'two', 'ifng', 'ie']\n",
            "Topic 3:\n",
            "['immediately', 'antigens', 'lipids', 'vaccination', 'antigen', 'delivered', 'vaccine', 'peptide', 'namely', 'people']\n",
            "Topic 4:\n",
            "['generation', 'ihc', 'sars', 'luciferase', 'covered', 'recently', 'expressing', 'angiotensin', 'sarscov', 'ace2']\n",
            "Topic 5:\n",
            "['infecting', 'replicates', 'protective', 'virus', 'protein', 'hiv', 'hospitals', 'influences', 'views', 'virulent']\n",
            "Topic 6:\n",
            "['sarscov', 'protein', 'inhibiting', 'views', 'zhang', 'dental', 'pathology', 'degeneration', 'protective', 'autophagy']\n",
            "Topic 7:\n",
            "['expressing', 'mri', 'signs', 'fewer', 'gender', 'delivered', 'rna', 'hbov', 'sirna', 'sir']\n",
            "Topic 8:\n",
            "['lymphocyte', 'protein', 'molecule', 'rehabilitation', 'luciferase', 'vertical', 'ar', 'cells', 'september', 'exon']\n",
            "Topic 9:\n",
            "['ifnλ', 'infecting', 'injury', 'patient', 'cystic', 'il2', 'cytokine', 'response', 'respondents', 'immediately']\n",
            "Topic 10:\n",
            "['spike', 'older', 'japan', 'demonstrating', 'brain', 'lesion', 'demyelinating', 'ratios', 'cmv', 'mva']\n",
            "Topic 11:\n",
            "['fields', 'machinery', 'expressing', 'titers', 'populations', 'product', 'cells', 'tnfa', 'lowest', 'macrophage']\n",
            "Topic 12:\n",
            "['episodes', 'alveolar', 'barrier', 'injuries', 'endoscopic', 'surfaces', 'lowest', 'ards', 'published', 'luciferase']\n",
            "Topic 13:\n",
            "['membranes', 'tb', 'physiological', 'infecting', 'tcell', 'hiv', 'lymphocyte', 'cd4', 'cells', 'cd8']\n",
            "Topic 14:\n",
            "['virulent', 'vast', 'vaccination', 'gender', 'vaccine', 'cells', 'delayed', 'recognized', 'vaccinia', 'mv']\n",
            "\n",
            "\n",
            "Cluster 2\n"
          ]
        },
        {
          "name": "stderr",
          "output_type": "stream",
          "text": [
            "/home/sina/Desktop/dm_proj_3/venv/lib/python3.10/site-packages/sklearn/decomposition/_nmf.py:1759: ConvergenceWarning:\n",
            "\n",
            "Maximum number of iterations 200 reached. Increase it to improve convergence.\n",
            "\n"
          ]
        },
        {
          "name": "stdout",
          "output_type": "stream",
          "text": [
            "Topic 0:\n",
            "['rise', 'infecting', '2014', 'arabia', 'cases', 'nose', 'health', 'saturation', 'transmembrane', 'mers']\n",
            "Topic 1:\n",
            "['inflammation', 'spleen', 'spinal', 'dairy', 'transfusion', 'infecting', 'luciferase', 'compatible', 'mhv', 'mers']\n",
            "Topic 2:\n",
            "['utilizing', 'dominant', 'infrastructure', 'done', 'mentioned', 'mers', 'pathways', 'transformed', 'controversial', 'plaque']\n",
            "Topic 3:\n",
            "['ill', 'migration', 'spp', 'coronary', 'virulent', 'otherwise', 'coronavirus', 'mers', 'sars', 'transmembrane']\n",
            "Topic 4:\n",
            "['antibodies', 'inhibitor', 'mers', 'cation', 'identical', 'ubiquitin', 'h3n2', 'resection', 'infiltration', 'substrates']\n",
            "Topic 5:\n",
            "['saturation', 'cdc', 'mediators', '2015', 'junction', 'independently', 'kong', 'horses', 'patient', 'mers']\n",
            "Topic 6:\n",
            "['assay', 'risks', 'views', 'rv', 'virulent', 'figs', 'µl', 'cells', 'hubei', 'mers']\n",
            "Topic 7:\n",
            "['gender', 'human', 'huh7', 'strain', 'evolution', 'phosphorylation', '4b', '4a', 'sequenced', 'mers']\n",
            "Topic 8:\n",
            "['restricted', 'fractions', 'fragment', 'fields', 'clone', 'genetics', 'full', 'sars', 'mers', 'course']\n",
            "Topic 9:\n",
            "['subtypes', 'vaccination', 'protective', 'igg', 'saudi', 'ige', 'glucose', 'rbc', 'mhv', 'mers']\n",
            "Topic 10:\n",
            "['supporting', 'definition', 'cortex', 'post', 'rhinovirus', 'strand', 'antiviral', 'treating', 'theory', 'mers']\n",
            "Topic 11:\n",
            "['arabia', 'sars', 'views', 'saturation', 'surface', 'sampling', 'environment', 'patient', 'mers', 'mentioned']\n",
            "Topic 12:\n",
            "['health', 'trained', 'work', 'numerous', 'infections', 'surveillance', 'emergency', 'respond', 'mers', 'hcv']\n",
            "Topic 13:\n",
            "['neutralization', 'views', '2015', '2014', 'plaque', 'downstream', 'animals', 'al', 'estimation', 'mers']\n",
            "Topic 14:\n",
            "['leukocytes', 'trauma', 'prevention', 'inform', 'know', 'edema', 'retrospectively', 'coronaviruses', 'question', 'mers']\n",
            "\n",
            "\n",
            "Cluster 3\n",
            "Topic 0:\n",
            "['real', 'probe', 'nuclei', 'specimen', 'primer', 'assays', 'detecting', 'amplification', 'dmy', 'pc']\n",
            "Topic 1:\n",
            "['sars', 'primary', 'assays', 'views', 'real', 'assay', 'al', 'estimation', 'rtlamp', 'risks']\n",
            "Topic 2:\n",
            "['ihc', 'shelter', 'sampled', 'isolated', 'sheep', 'feeding', 'fine', 'cat', 'feces', 'cats']\n",
            "Topic 3:\n",
            "['p001', 'bp', 'significantly', 'clinical', 'animals', 'crosssectional', 'cdv', 'canine', 'documented', 'dog']\n",
            "Topic 4:\n",
            "['stored', 'rv', 'egfr', 'avian', 'isolated', 'birds', 'strain', 'vaccination', 'chickens', 'iav']\n",
            "Topic 5:\n",
            "['gender', 'μgml', 'reached', 'nervous', 'assay', 'al', 'estimation', 'primer', 'rtlamp', 'rt']\n",
            "Topic 6:\n",
            "['sdspage', 'interviews', 'sampled', 'animals', 'catheter', 'calf', 'ros', 'diameter', 'covs', 'calves']\n",
            "Topic 7:\n",
            "['piglets', 'populations', 'sequenced', 'sperm', 'interviews', 'sampled', 'downstream', 'strain', 'pig', 'pediatric']\n",
            "Topic 8:\n",
            "['making', 'primer', 'specifically', 'sensitive', 'amplification', 'task', 'microscopic', 'dmy', 'primary', 'lacking']\n",
            "Topic 9:\n",
            "['october', 'needs', 'serious', 'igg1', 'tertiary', 'serotypes', 'sampled', 'positions', 'sequencing', 'elimination']\n",
            "Topic 10:\n",
            "['herd', 'picture', 'sequenced', 'genomic', 'piglets', 'strain', 'populations', 'sampled', 'isolated', 'pcr']\n",
            "Topic 11:\n",
            "['going', 'likewise', 'sensitive', 'cancer', 'waste', 'mrsa', 'suppression', 'sensitivity', 'detecting', 'biosensor']\n",
            "Topic 12:\n",
            "['h7n9', 'pig', 'swab', 'nanoparticles', 'isolate', 'virulent', 'virus', 'proximity', 'h1n1', 'piglets']\n",
            "Topic 13:\n",
            "['pretreatment', 'estimation', 'al', 'far', 'cattle', 'farm', 'daily', 'military', 'hepatocytes', 'herd']\n",
            "Topic 14:\n",
            "['specialized', 'clinical', 'infecting', 'significantly', 'maximum', 'fecal', 'skills', 'february', 'animals', 'birds']\n",
            "\n",
            "\n",
            "Cluster 4\n"
          ]
        },
        {
          "name": "stderr",
          "output_type": "stream",
          "text": [
            "/home/sina/Desktop/dm_proj_3/venv/lib/python3.10/site-packages/sklearn/decomposition/_nmf.py:1759: ConvergenceWarning:\n",
            "\n",
            "Maximum number of iterations 200 reached. Increase it to improve convergence.\n",
            "\n"
          ]
        },
        {
          "name": "stdout",
          "output_type": "stream",
          "text": [
            "Topic 0:\n",
            "['post', 'ccbyncnd', 'gramnegative', 'hmpv', 'copy', 'authorfunder', 'permeability', 'medium', 'library', 'preparedness']\n",
            "Topic 1:\n",
            "['medium', 'mode', 'april', 'covered', 'nucleus', 'library', 'cases', '2020', 'preparedness', 'enzymes']\n",
            "Topic 2:\n",
            "['severely', 'admission', 'models', 'clinical', 'several', 'medium', 'ground', 'preparedness', 'covered', 'patient']\n",
            "Topic 3:\n",
            "['febrile', 'loci', 'providing', 'city', 'cases', 'china', '2020', 'hsv1', 'wt', 'cities']\n",
            "Topic 4:\n",
            "['copy', 'permeability', 'sampled', 'sustained', '2020', 'medium', 'zoonotic', 'library', 'preparedness', 'sarscov']\n",
            "Topic 5:\n",
            "['hmpv', 'permeability', 'ccbyncnd', 'etc', 'medium', 'library', 'sarscov', 'preparedness', 'marrow', 'mask']\n",
            "Topic 6:\n",
            "['library', 'day', 'milk', 'countries', 'preparedness', 'cases', 'strategies', 'contribution', 'ibv', 'covered']\n",
            "Topic 7:\n",
            "['pe', 'cultures', 'counted', 'log', 'damage', 'dynamic', 'preparedness', 'morphology', 'snps', 'distance']\n",
            "Topic 8:\n",
            "['singlestranded', 'strict', '2020', 'intervals', 'pedv', 'certified', 'optical', 'icg', 'preparedness', 'contribution']\n",
            "Topic 9:\n",
            "['2020', '95', 'cases', 'icg', 'index', 'library', 'ci', 'preparedness', 'covered', 'beds']\n",
            "Topic 10:\n",
            "['2020', 'fields', 'poorly', 'index', 'medium', 'infecting', 'containing', 'pe', 'preparedness', 'loci']\n",
            "Topic 11:\n",
            "['age', 'tested', 'post', 'pedv', 'certified', 'dogs', 'morphology', 'medium', 'preparedness', 'covered']\n",
            "Topic 12:\n",
            "['symptom', 'studied', 'bias', 'medium', 'library', 'prophylaxis', 'sarscov', 'preparedness', 'cases', 'asymptomatic']\n",
            "Topic 13:\n",
            "['cells', 'fields', 'mri', 'promote', 'copy', 'hmpv', 'dogs', 'authorfunder', 'ihc', 'preparedness']\n",
            "Topic 14:\n",
            "['authorfunder', 'paired', 'csf', 'location', 'dogs', 'mode', 'sera', 'interstitial', 'medium', 'preparedness']\n",
            "\n",
            "\n"
          ]
        }
      ],
      "source": [
        "# do topic modeling using LSA for each cluster\n",
        "\n",
        "from sklearn.decomposition import TruncatedSVD\n",
        "\n",
        "for cluster in range(5):\n",
        "    print(f'Cluster {cluster}')\n",
        "    cluster_df = tfidf_df[tfidf_df['cluster'] == cluster].drop(columns=['cluster'], errors='ignore')\n",
        "    lsa = TruncatedSVD(n_components=15, random_state=42)\n",
        "    lsa.fit(cluster_df)\n",
        "    for i, topic in enumerate(lsa.components_):\n",
        "        print(f'Topic {i}:')\n",
        "        print([tfidf_vectorizer.get_feature_names_out()[index] for index in topic.argsort()[-10:]])\n",
        "    print('\\n')\n",
        "\n",
        "# do topic modeling using NMF for each cluster\n",
        "\n",
        "from sklearn.decomposition import NMF\n",
        "\n",
        "for cluster in range(5):\n",
        "    print(f'Cluster {cluster}')\n",
        "    cluster_df = tfidf_df[tfidf_df['cluster'] == cluster].drop(columns=['cluster'], errors='ignore')\n",
        "    nmf = NMF(n_components=15, random_state=42)\n",
        "    nmf.fit(cluster_df)\n",
        "    for i, topic in enumerate(nmf.components_):\n",
        "        print(f'Topic {i}:')\n",
        "        print([tfidf_vectorizer.get_feature_names_out()[index] for index in topic.argsort()[-10:]])\n",
        "    print('\\n')"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {},
      "source": [
        "<div dir=rtl>\n",
        "\n",
        "<font color='yellow'>\n",
        "در این قسمت نیز برای قسمت امتیازی با استفاده از ۲ روش NMF و LSA بخش Topic modeling را انجام داده و خروجی هر بخش را مشاهده میکنیم و تفاوت آن‌هارا با یکدیگر شاهد هستیم.\n",
        "<br>\n",
        "</div>"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "pLO8IzbODDry"
      },
      "source": [
        "<font face=\"B Mitra\">\n",
        "<div dir=rtl>\n",
        "<font size=6>\n",
        "<b>  مصورسازی </b>\n",
        "<br>\n",
        "<p align=\"justify\">\n",
        "<font size=4>\n",
        "<b>این بخش شامل نمره نیست و صرفا جهت درک شما از مراحل انجام شده است</b><br>\n",
        "<font size=5>\n",
        "مراحل قبلی برچسب‌های خوشه‌بندی و مجموعه‌ای از مقالات را به دو بعد کاهش داده است. می‌توانیم یک طرح تعاملی از خوشه ها ایجاد کنیم. <br>\n",
        "شما میتوانید با انتخاب هر خوشه از اسلایدر، توزیع هر خوشه را به صورت مجزا مشاهده کنید. همچنین میتوانید با بردن نشانگر روی هریک از نقاط مشخصات کلی آن مقاله را مشاهده کنید.\n",
        "<br>\n",
        "<img src=\"https://drive.google.com/uc?id=14xXSuD-FhmSSJBI0oH-a-DDkgjBtqj4_\" alt=\"Linear Algebra Cover Art\" width=\"800\">\n",
        "</p>\n",
        "</font>\n",
        "</div>"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "M5O_BzL6Z3Nq"
      },
      "source": [
        "<font face=\"B Mitra\">\n",
        "<div dir=rtl>\n",
        "<p align=\"justify\">\n",
        "<font size=5>\n",
        "ورودی تابع زیر، دیتافریم مقالات می‌باشد که می‌بایست شامل ستون‌های زیر باشد:\n",
        "<br>\n",
        "1. <code>tsne-2d-one</code>: مولفهٔ اول t-SNE\n",
        "<br>\n",
        "2. <code>tsne-2d-two</code>: مولفهٔ دوم t-SNE\n",
        "<br>\n",
        "3. <code>y</code>: خوشهٔ هر یک از مقالات\n",
        "</p>\n",
        "</font>\n",
        "</div>"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 20,
      "metadata": {
        "id": "5uAP_hozWWqF"
      },
      "outputs": [],
      "source": [
        "import plotly.express as px\n",
        "import plotly.graph_objects as go\n"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 21,
      "metadata": {
        "id": "FboibFCYLKAW"
      },
      "outputs": [],
      "source": [
        "def interactive_plot(df):\n",
        "    clusters = sorted(df['y'].unique())\n",
        "\n",
        "    # Generate distinct colors for each cluster using Plotly's colors\n",
        "    colors = px.colors.qualitative.Plotly\n",
        "\n",
        "    # Create a scatter plot for each cluster with a unique color\n",
        "    data = []\n",
        "    for i, cluster in enumerate(clusters):\n",
        "        cluster_data = df[df['y'] == cluster]\n",
        "        scatter = go.Scatter(\n",
        "            x=cluster_data['tsne-2d-one'],\n",
        "            y=cluster_data['tsne-2d-two'],\n",
        "            mode='markers',\n",
        "            name=f'Cluster {cluster}',\n",
        "            text=cluster_data['title'],\n",
        "            hoverinfo='text',\n",
        "            marker=dict(size=10, color=colors[i % len(colors)]),  # Assign a unique color\n",
        "            visible=False  # Initially, make all traces invisible\n",
        "        )\n",
        "        data.append(scatter)\n",
        "\n",
        "    # Add a scatter plot for all clusters with different colors\n",
        "    scatter_all = go.Scatter(\n",
        "        x=df['tsne-2d-one'],\n",
        "        y=df['tsne-2d-two'],\n",
        "        mode='markers',\n",
        "        name='All Clusters',\n",
        "        text=df['title'],\n",
        "        hoverinfo='text',\n",
        "        marker=dict(size=10, color=df['y'].map(lambda x: colors[x % len(colors)])),  # Assign colors by cluster\n",
        "        visible=True  # Initially, show all clusters\n",
        "    )\n",
        "    data.append(scatter_all)\n",
        "\n",
        "    x_min = df['tsne-2d-one'].min()\n",
        "    x_max = df['tsne-2d-one'].max()\n",
        "    y_min = df['tsne-2d-two'].min()\n",
        "    y_max = df['tsne-2d-two'].max()\n",
        "\n",
        "    # Initialize the figure\n",
        "    fig = go.Figure(data=data)\n",
        "\n",
        "    # Ensure square aspect ratio\n",
        "    fig.update_layout(\n",
        "        title='Cluster Visualization',\n",
        "        xaxis=dict(title='t-SNE 1', range=[x_min, x_max]),  # Ensure x and y axes are equal\n",
        "        yaxis=dict(title='t-SNE 2', range=[y_min, y_max]),\n",
        "        width=1000,\n",
        "        height=700  # Ensure the figure is square-shaped\n",
        "    )\n",
        "\n",
        "    # Add hover functionality\n",
        "    fig.update_traces(\n",
        "        hoverinfo='text',\n",
        "        marker=dict(opacity=0.7, size=8),\n",
        "    )\n",
        "\n",
        "    # Add interactive slider for cluster selection\n",
        "    steps = []\n",
        "    for i, cluster in enumerate(clusters):\n",
        "        step = dict(\n",
        "            method='update',\n",
        "            args=[{'visible': [False] * len(clusters) + [False]},  # Hide all clusters\n",
        "                {'title': f'Cluster {cluster}'}],\n",
        "            label=f'Cluster {cluster}'\n",
        "        )\n",
        "        # Only make the current cluster visible\n",
        "        step['args'][0]['visible'][i] = True\n",
        "        steps.append(step)\n",
        "\n",
        "    # Add final step for all clusters\n",
        "    steps.append(dict(\n",
        "        method='update',\n",
        "        args=[{'visible': [False] * len(clusters) + [True]},  # Only show the 'all clusters' trace\n",
        "            {'title': 'All Clusters'}],\n",
        "        label='All Clusters'\n",
        "    ))\n",
        "\n",
        "    sliders = [dict(\n",
        "        active=len(steps) - 1,\n",
        "        currentvalue={\"prefix\": \"Cluster: \"},\n",
        "        pad={\"t\": 50},\n",
        "        steps=steps\n",
        "    )]\n",
        "\n",
        "    fig.update_layout(\n",
        "        sliders=sliders\n",
        "    )\n",
        "\n",
        "    # Display the plot\n",
        "    fig.show()"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 22,
      "metadata": {
        "id": "puVxue-WWWqF",
        "outputId": "86e8e7f7-b3eb-42be-fb09-11b374cc06f0"
      },
      "outputs": [
        {
          "data": {
            "text/plain": [
              "0       16.638964\n",
              "1        5.157310\n",
              "2       18.549051\n",
              "3      -16.707073\n",
              "4       26.456594\n",
              "          ...    \n",
              "1449   -11.949781\n",
              "1450   -38.286812\n",
              "1451    52.731823\n",
              "1452   -42.604511\n",
              "1453   -17.900536\n",
              "Name: x, Length: 1454, dtype: float32"
            ]
          },
          "execution_count": 22,
          "metadata": {},
          "output_type": "execute_result"
        }
      ],
      "source": [
        "tsne_df['x']"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 23,
      "metadata": {
        "id": "KX7phW9rWWqG"
      },
      "outputs": [],
      "source": [
        "visulization_df = df.copy()\n",
        "visulization_df['tsne-2d-one'] = tsne_df['x'].values\n",
        "visulization_df['tsne-2d-two'] = tsne_df['y'].values\n",
        "visulization_df['y'] = kmeans.labels_"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 24,
      "metadata": {
        "id": "Fa4bkLd7WWqG",
        "outputId": "a2a5e689-77da-4254-efb1-86ab49412fc8"
      },
      "outputs": [
        {
          "data": {
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              "      <th></th>\n",
              "      <th>paper_id</th>\n",
              "      <th>doi</th>\n",
              "      <th>abstract</th>\n",
              "      <th>body_text</th>\n",
              "      <th>authors</th>\n",
              "      <th>title</th>\n",
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              "      <th>processed_text</th>\n",
              "      <th>tsne-2d-one</th>\n",
              "      <th>tsne-2d-two</th>\n",
              "      <th>y</th>\n",
              "    </tr>\n",
              "  </thead>\n",
              "  <tbody>\n",
              "    <tr>\n",
              "      <th>6252</th>\n",
              "      <td>fefd6cdcddcb00d1ba2ef1a0d3bba9f312010a1d</td>\n",
              "      <td>10.1111/j.1524-4733.2008.00379.x</td>\n",
              "      <td></td>\n",
              "      <td>China is the biggest country in the world that...</td>\n",
              "      <td>Li, Youing.  Sun, Xin.  Wang, Li</td>\n",
              "      <td>Evidence-Based Medicine in China</td>\n",
              "      <td>Value in Health</td>\n",
              "      <td>Not provided.</td>\n",
              "      <td>en</td>\n",
              "      <td>[china, biggest, country, world, 13, billion, ...</td>\n",
              "      <td>china biggest country world 13 billion populat...</td>\n",
              "      <td>16.638964</td>\n",
              "      <td>23.411583</td>\n",
              "      <td>11</td>\n",
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              "    <tr>\n",
              "      <th>4684</th>\n",
              "      <td>2a3d080d5dcf6771db002366691f35e5d6f0e493</td>\n",
              "      <td>10.1007/s13238-010-0029-7</td>\n",
              "      <td></td>\n",
              "      <td>✉ Correspondence: zlshi@wh.iov.cn Bat, the onl...</td>\n",
              "      <td>Shi, Zhengli</td>\n",
              "      <td>Bat and virus</td>\n",
              "      <td>Protein &amp; Cell</td>\n",
              "      <td>Not provided.</td>\n",
              "      <td>en</td>\n",
              "      <td>[correspondence, zlshiwhiovcn, bat, flying, ma...</td>\n",
              "      <td>correspondence zlshiwhiovcn bat flying mammal ...</td>\n",
              "      <td>5.157310</td>\n",
              "      <td>-10.124955</td>\n",
              "      <td>10</td>\n",
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              "    <tr>\n",
              "      <th>1731</th>\n",
              "      <td>2de657aabab331e75657bfc1443542fd345b6f26</td>\n",
              "      <td>10.1016/j.ccc.2019.06.001</td>\n",
              "      <td>KEYWORDS\\nPandemic Influenza Disaster prepared...</td>\n",
              "      <td>Outbreaks of infectious disease pose unique ch...</td>\n",
              "      <td>Maves, Ryan C..  Jamros, Christina M..  Smith...</td>\n",
              "      <td>Intensive Care Unit Preparedness During&lt;br&gt;Pa...</td>\n",
              "      <td>Crit Care Clin</td>\n",
              "      <td>KEYWORDS\\nPandemic Influenza Disaster&lt;br&gt;prep...</td>\n",
              "      <td>en</td>\n",
              "      <td>[outbreaks, infectious, disease, pose, unique,...</td>\n",
              "      <td>outbreaks infectious disease pose unique chall...</td>\n",
              "      <td>18.549051</td>\n",
              "      <td>31.943220</td>\n",
              "      <td>11</td>\n",
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              "    <tr>\n",
              "      <th>4742</th>\n",
              "      <td>bc22758234283f024f16e2dbe660bc909b512b92</td>\n",
              "      <td>10.1016/j.vetpar.2007.11.020</td>\n",
              "      <td>Cryptosporidium parvum is recognized as one of...</td>\n",
              "      <td>Diarrhoeal diseases of infectious aethiology r...</td>\n",
              "      <td>Klein, Pavel.  Kleinová, Tereza.  Volek,&lt;br&gt;Z...</td>\n",
              "      <td>Effect of Cryptosporidium parvum infection on...</td>\n",
              "      <td>Veterinary Parasitology</td>\n",
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              "      <td>en</td>\n",
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              "      <td>10.1111/irv.12518</td>\n",
              "      <td>, Brazil, in the period of Background: The res...</td>\n",
              "      <td>The inclusion criteria for asymptomatic adults...</td>\n",
              "      <td>Moreira, Luciana Peniche.  Watanabe, Aripuana...</td>\n",
              "      <td>Respiratory syncytial virus evaluation among&lt;...</td>\n",
              "      <td>Influenza Other Respir Viruses</td>\n",
              "      <td>, Brazil, in the period of Background: The&lt;br...</td>\n",
              "      <td>en</td>\n",
              "      <td>[inclusion, criteria, asymptomatic, adults, ab...</td>\n",
              "      <td>inclusion criteria asymptomatic adults absence...</td>\n",
              "      <td>26.456594</td>\n",
              "      <td>1.074980</td>\n",
              "      <td>9</td>\n",
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              "      <td>10.1038/sj.eye.6701885</td>\n",
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              "      <td>Severe acute respiratory syndrome (SARS) is th...</td>\n",
              "      <td>Chan, W-M.  Liu, D T L.  Chan, P K S.  Chong,...</td>\n",
              "      <td>Precautions in ophthalmic practice in a&lt;br&gt;ho...</td>\n",
              "      <td>Eye (Lond)</td>\n",
              "      <td>Many new infectious diseases in humans have&lt;b...</td>\n",
              "      <td>en</td>\n",
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              "      <td>severe acute respiratory syndrome sars modern ...</td>\n",
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              "      <td>16.804514</td>\n",
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              "      <td></td>\n",
              "      <td>The Middle East respiratory syndrome coronavir...</td>\n",
              "      <td>The Middle East respiratory syndrome (MERS) is...</td>\n",
              "      <td>Ozharovskaia, T. A..  Zubkova, O. V.. &lt;br&gt;Dol...</td>\n",
              "      <td>Immunogenicity of Different Forms of Middle&lt;b...</td>\n",
              "      <td>Acta Naturae</td>\n",
              "      <td>The Middle East respiratory syndrome&lt;br&gt;coron...</td>\n",
              "      <td>en</td>\n",
              "      <td>[middle, east, respiratory, syndrome, mers, ac...</td>\n",
              "      <td>middle east respiratory syndrome mers acute in...</td>\n",
              "      <td>-38.286812</td>\n",
              "      <td>-19.332333</td>\n",
              "      <td>2</td>\n",
              "    </tr>\n",
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              "      <th>6879</th>\n",
              "      <td>94475eaa419b11d7edf53c2fe4e423acef0ce881</td>\n",
              "      <td>10.12688/wellcomeopenres.15718.1</td>\n",
              "      <td>The current novel coronavirus outbreak appears...</td>\n",
              "      <td>The ongoing outbreak of novel Coronavirus appe...</td>\n",
              "      <td>Abbott, Sam.  Hellewell, Joel.  Munday, James...</td>\n",
              "      <td>The transmissibility of novel Coronavirus in&lt;...</td>\n",
              "      <td>Wellcome Open Res</td>\n",
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              "      <td>en</td>\n",
              "      <td>[ongoing, outbreak, novel, coronavirus, appear...</td>\n",
              "      <td>ongoing outbreak novel coronavirus appears ori...</td>\n",
              "      <td>52.731823</td>\n",
              "      <td>1.140542</td>\n",
              "      <td>12</td>\n",
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              "      <th>6775</th>\n",
              "      <td>a6ab8b27158a48683b4fa6d081614cde9087cc5e</td>\n",
              "      <td>10.1016/j.bja.2020.05.002</td>\n",
              "      <td></td>\n",
              "      <td>Editor -The critical shortage of medical suppl...</td>\n",
              "      <td>Lang, Angela L..  Shaw, Kendrick M..  Lozano,...</td>\n",
              "      <td>Effectiveness of a negative-pressure patient&lt;...</td>\n",
              "      <td>Br. j. anaesth</td>\n",
              "      <td>Not provided.</td>\n",
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              "      <th>3295</th>\n",
              "      <td>a3ef5e2ffb31783af550c32f7512c0330ab9bc93</td>\n",
              "      <td>10.3201/eid1602.090780</td>\n",
              "      <td></td>\n",
              "      <td>To determine the epidemiologic and clinical fe...</td>\n",
              "      <td>Field, Hume.  Schaaf, Kylie.  Kung, Nina.  Si...</td>\n",
              "      <td>Hendra Virus Outbreak with Novel Clinical&lt;br&gt;...</td>\n",
              "      <td>Emerg Infect Dis</td>\n",
              "      <td>Not provided.</td>\n",
              "      <td>en</td>\n",
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              "      <td>determine epidemiologic clinical features 2008...</td>\n",
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            ],
            "text/plain": [
              "                                      paper_id  \\\n",
              "6252  fefd6cdcddcb00d1ba2ef1a0d3bba9f312010a1d   \n",
              "4684  2a3d080d5dcf6771db002366691f35e5d6f0e493   \n",
              "1731  2de657aabab331e75657bfc1443542fd345b6f26   \n",
              "4742  bc22758234283f024f16e2dbe660bc909b512b92   \n",
              "4521  a204aafa38365dbcc0a26af3ca2c6d3313d7fab2   \n",
              "...                                        ...   \n",
              "967   e021d75c9a2c8f02f80ccfbad4133b15d1777576   \n",
              "6043  24beb94c313a07be6b0c745a6ca8a3d810618506   \n",
              "6879  94475eaa419b11d7edf53c2fe4e423acef0ce881   \n",
              "6775  a6ab8b27158a48683b4fa6d081614cde9087cc5e   \n",
              "3295  a3ef5e2ffb31783af550c32f7512c0330ab9bc93   \n",
              "\n",
              "                                   doi  \\\n",
              "6252  10.1111/j.1524-4733.2008.00379.x   \n",
              "4684         10.1007/s13238-010-0029-7   \n",
              "1731         10.1016/j.ccc.2019.06.001   \n",
              "4742      10.1016/j.vetpar.2007.11.020   \n",
              "4521                 10.1111/irv.12518   \n",
              "...                                ...   \n",
              "967             10.1038/sj.eye.6701885   \n",
              "6043                                     \n",
              "6879  10.12688/wellcomeopenres.15718.1   \n",
              "6775         10.1016/j.bja.2020.05.002   \n",
              "3295            10.3201/eid1602.090780   \n",
              "\n",
              "                                               abstract  \\\n",
              "6252                                                      \n",
              "4684                                                      \n",
              "1731  KEYWORDS\\nPandemic Influenza Disaster prepared...   \n",
              "4742  Cryptosporidium parvum is recognized as one of...   \n",
              "4521  , Brazil, in the period of Background: The res...   \n",
              "...                                                 ...   \n",
              "967   Many new infectious diseases in humans have be...   \n",
              "6043  The Middle East respiratory syndrome coronavir...   \n",
              "6879  The current novel coronavirus outbreak appears...   \n",
              "6775                                                      \n",
              "3295                                                      \n",
              "\n",
              "                                              body_text  \\\n",
              "6252  China is the biggest country in the world that...   \n",
              "4684  ✉ Correspondence: zlshi@wh.iov.cn Bat, the onl...   \n",
              "1731  Outbreaks of infectious disease pose unique ch...   \n",
              "4742  Diarrhoeal diseases of infectious aethiology r...   \n",
              "4521  The inclusion criteria for asymptomatic adults...   \n",
              "...                                                 ...   \n",
              "967   Severe acute respiratory syndrome (SARS) is th...   \n",
              "6043  The Middle East respiratory syndrome (MERS) is...   \n",
              "6879  The ongoing outbreak of novel Coronavirus appe...   \n",
              "6775  Editor -The critical shortage of medical suppl...   \n",
              "3295  To determine the epidemiologic and clinical fe...   \n",
              "\n",
              "                                                authors  \\\n",
              "6252                   Li, Youing.  Sun, Xin.  Wang, Li   \n",
              "4684                                       Shi, Zhengli   \n",
              "1731   Maves, Ryan C..  Jamros, Christina M..  Smith...   \n",
              "4742   Klein, Pavel.  Kleinová, Tereza.  Volek,<br>Z...   \n",
              "4521   Moreira, Luciana Peniche.  Watanabe, Aripuana...   \n",
              "...                                                 ...   \n",
              "967    Chan, W-M.  Liu, D T L.  Chan, P K S.  Chong,...   \n",
              "6043   Ozharovskaia, T. A..  Zubkova, O. V.. <br>Dol...   \n",
              "6879   Abbott, Sam.  Hellewell, Joel.  Munday, James...   \n",
              "6775   Lang, Angela L..  Shaw, Kendrick M..  Lozano,...   \n",
              "3295   Field, Hume.  Schaaf, Kylie.  Kung, Nina.  Si...   \n",
              "\n",
              "                                                  title  \\\n",
              "6252                   Evidence-Based Medicine in China   \n",
              "4684                                      Bat and virus   \n",
              "1731   Intensive Care Unit Preparedness During<br>Pa...   \n",
              "4742   Effect of Cryptosporidium parvum infection on...   \n",
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              "...                                                 ...   \n",
              "967    Precautions in ophthalmic practice in a<br>ho...   \n",
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              "\n",
              "                             journal  \\\n",
              "6252                 Value in Health   \n",
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              "1731                  Crit Care Clin   \n",
              "4742         Veterinary Parasitology   \n",
              "4521  Influenza Other Respir Viruses   \n",
              "...                              ...   \n",
              "967                       Eye (Lond)   \n",
              "6043                    Acta Naturae   \n",
              "6879               Wellcome Open Res   \n",
              "6775                  Br. j. anaesth   \n",
              "3295                Emerg Infect Dis   \n",
              "\n",
              "                                       abstract_summary language  \\\n",
              "6252                                      Not provided.       en   \n",
              "4684                                      Not provided.       en   \n",
              "1731   KEYWORDS\\nPandemic Influenza Disaster<br>prep...       en   \n",
              "4742   Cryptosporidium parvum is recognized as one o...       en   \n",
              "4521   , Brazil, in the period of Background: The<br...       en   \n",
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              "6879   The current novel coronavirus outbreak<br>app...       en   \n",
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                    " Risk of transmission of airborne infection<br>during train commute based on mathematical model",
                    " Respiratory and facial protection: a critical<br>review of recent literature",
                    " Directional Airflow and Ventilation in<br>Hospitals: A Case Study of Secondary Airborne Infection",
                    " Transmission routes of respiratory viruses<br>among humans",
                    " Collection, particle sizing and detection of<br>airborne viruses",
                    " Fabrication of an anti-viral air filter with<br>SiO2–Ag nanoparticles and performance evaluation in a<br>continuous airflow condition",
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                    " Chapter 7 Environmental and Safety Issues With<br>Nanoparticles",
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                    " Ischemia-reperfusion Injury of the Lung: Role<br>of Surfactant",
                    " Antiviral activities of ISG20 in<br>positive-strand RNA virus infections",
                    " Oral immunization with LacVax® OmpA induces<br>protective immune response against Shigella flexneri 2a<br>ATCC 12022 in a murine model",
                    " An Overview on the Field of Micro- and<br>Nanotechnologies for Synthetic Peptide-Based Vaccines",
                    " The Innate Antiviral Response in Animals: An<br>Evolutionary Perspective from Flagellates to Humans",
                    " Activation of the Unfolded Protein Response Is<br>Required for Defenses against Bacterial Pore-Forming<br>Toxin In Vivo",
                    " An Assay for Mannan‐Binding<br>Lectin‐Associated Serine Protease 3, MASP‐3",
                    " Glial Cell Lines: An Overview",
                    " Modulation of Airway Responsiveness to<br>Acetylcholine by Nitric Oxide in a Rabbit Model",
                    " IL-13 signaling via IL-13Rα(2) triggers<br>TGF-β(1)-dependent allograft fibrosis",
                    " The Role of Carbohydrates in Infection<br>Strategies of Enteric Pathogens",
                    " Protein degradation systems in viral<br>myocarditis leading to dilated cardiomyopathy",
                    " Stimulation with a class A CpG oligonucleotide<br>enhances resistance to infection with feline viruses<br>from five different families",
                    " Meta-analysis of transcriptomes of SARS-Cov2<br>infected human lung epithelial cells identifies<br>transmembrane serine proteases co-expressed with ACE2 and<br>biological processes related to viral entry, immunity,<br>inflammation and cellular stress",
                    " Can biowarfare agents be defeated with light?",
                    " Antimicrobial and immunomodulatory activity<br>induced by loperamide in mycobacterial infections",
                    " Aminoacyl-tRNA synthetases, therapeutic<br>targets for infectious diseases",
                    " Decoding the enigma of antiviral crisis: Does<br>one target molecule regulate all?",
                    " The antiviral activity of poly-γ-glutamic<br>acid, a polypeptide secreted by Bacillus sp.,<br>through induction of CD14-dependent type I interferon<br>responses",
                    " Identification of cross‐reactive antibodies<br>for the detection of lymphocytes, myeloid cells<br>and haematopoietic precursors in the naked mole<br>rat",
                    " Immunopathogenesis of 2009 pandemic<br>influenza",
                    " Protective effects of the Francisella<br>tularensis ΔpdpC mutant against its virulent parental<br>strain SCHU P9 in Cynomolgus macaques",
                    " 20th ECP",
                    " Development of Vaccine Delivery Vehicles<br>Based on Lactic Acid Bacteria",
                    " Effect of cadmium on the expression levels of<br>interleukin-1α and interleukin-10 cytokines in human lung<br>cells",
                    " Silver Nanoparticles Induce HePG-2 Cells<br>Apoptosis Through ROS-Mediated Signaling Pathways",
                    " Synergistic inhibition of human<br>cytomegalovirus replication by interferon-alpha/beta and<br>interferon-gamma",
                    " Targeted delivery of ribavirin improves<br>outcome of murine viral fulminant hepatitis via<br>enhanced anti‐viral activity",
                    " The Synergistic Interaction of Interferon<br>Types I and II Leads to Marked Reduction in Severe<br>Acute Respiratory Syndrome-Associated<br>Coronavirus Replication and Increase in the Expression of<br>mRNAs for Interferon-Induced Proteins",
                    " Alternative Experimental Models for Studying<br>Influenza Proteins, Host–Virus Interactions and<br>Anti-Influenza Drugs",
                    " Tight Junctions Go Viral!",
                    " The E3 ligase TRIM56 is a host restriction<br>factor of Zika virus and depends on its RNA-binding<br>activity but not miRNA regulation, for antiviral<br>function",
                    " Phage display as a promising approach for<br>vaccine development",
                    " Stem cell-derived mitochondria<br>transplantation: a novel strategy and the challenges for the<br>treatment of tissue injury",
                    " Biomedicines as Adverse Event Inducers",
                    " Glycyrrhizin Exerts Antioxidative Effects in<br>H5N1 Influenza A Virus-Infected Cells and Inhibits<br>Virus Replication and Pro-Inflammatory Gene<br>Expression",
                    " Steroid-induced osteonecrosis of the femoral<br>head reveals enhanced reactive oxygen species and<br>hyperactive osteoclasts",
                    " The Placental Protein Syncytin-1 Impairs<br>Antiviral Responses and Exaggerates Inflammatory<br>Responses to Influenza",
                    " Xanthine Oxidase Inhibition by Febuxostat in<br>Macrophages Suppresses Angiotensin II-Induced Aortic<br>Fibrosis",
                    " Antiviral activities of Schizonepeta<br>tenuifolia Briq. against enterovirus 71 in vitro and in<br>vivo",
                    " Cynanchum wilfordii Polysaccharides<br>Suppress Dextran Sulfate Sodium-Induced Acute Colitis<br>in Mice and the Production of Inflammatory<br>Mediators from Macrophages",
                    " Feline CD 4 molecules expressed on feline<br>non-lymphoid cell lines are not enough for productive<br>infection of highly lymphotropic feline<br>immunodeficiency virus isolates",
                    " Breast Cancer Resistance Protein<br>(BCRP/ABCG2) Inhibits Extra Villous Trophoblast<br>Migration: The Impact of Bacterial and Viral Infection",
                    " Structural requirements for initiation of<br>cross‐reactivity and CNS autoimmunity with a PLP(139–151) mimic<br>peptide derived from murine hepatitis virus",
                    " Respiratory inflammation and infections in<br>high‐performance athletes",
                    " Genetic restriction of murine hepatitis virus<br>type 3 expression in liver and brain: comparative<br>study in BALB/c and C3H mice by immunochemistry and<br>hybridization in situ",
                    " Application of proteomics technology for<br>analyzing the interactions between host cells and<br>intracellular infectious agents",
                    " Nanoparticle-Based Vaccines Against<br>Respiratory Viruses",
                    " Hydrocephalus in Suckling Rats Infected<br>Intracerebrally with Mouse Hepatitis Virus, MHV‐A59",
                    " Setting out on a fantastic voyage to advance<br>nanomedicine",
                    " Digesting Oneself and Digesting Microbes:<br>Autophagy as a Host Response to Viral Infection",
                    " The trafficking of natural killer cells",
                    " Studying Evolutionary Adaptation of MERS-CoV",
                    " Enhancing immunity in viral infections, with<br>special emphasis on COVID-19: A review",
                    " CD8+ T-Cell Priming During a Central Nervous<br>System Infection with Mouse Hepatitis Virus",
                    " Induction of immature dendritic cell<br>apoptosis by foot and mouth disease virus is an integrin<br>receptor mediated event before viral infection",
                    " Exploitation of viral properties for<br>intracellular delivery",
                    " Novel Pharmacologic Approaches for the<br>Treatment of ARDS",
                    " Peptide Vaccine: Progress and Challenges",
                    " Exosomes Derived From Septic Mouse Serum<br>Modulate Immune Responses via Exosome-Associated<br>Cytokines",
                    " Moloney leukemia virus-induced cell surface<br>antigen mimicry by monoclonal antibodies",
                    " Aberrant remyelination of axons after heat<br>injury in the dorsal funiculus of rat spinal cord",
                    " Interferon Lambda Genetics and Biology in<br>Regulation of Viral Control",
                    " Moving Forward: Recent Developments for the<br>Ferret Biomedical Research Model",
                    " The Malabsorption Syndrome and Its Causes and<br>Consequences",
                    " Sorafenib induces autophagy and suppresses<br>activation of human macrophage",
                    " Propagation of respiratory viruses in human<br>airway epithelia reveals persistent virus-specific<br>signatures",
                    " Cisplatin Derivatives as Antiviral Agents",
                    " Immortalization and Characterization of<br>Porcine Macrophages That Had Been Transduced with<br>Lentiviral Vectors Encoding the SV40 Large T Antigen and<br>Porcine Telomerase Reverse Transcriptase",
                    " MyD88 Is Required for Protection from Lethal<br>Infection with a Mouse-Adapted SARS-CoV",
                    " A Vesicular Stomatitis Virus Replicon-Based<br>Bioassay for the Rapid and Sensitive Determination of<br>Multi-Species Type I Interferon",
                    " Zika (PRVABC59) Infection Is Associated with T<br>cell Infiltration and Neurodegeneration in CNS of<br>Immunocompetent Neonatal C57Bl/6 Mice",
                    " The essential role of<br>fructose-1,6-bisphosphatase 2 enzyme in thermal homeostasis upon cold<br>stress",
                    " Emerging biomedical applications of<br>synthetic biology",
                    " DNA Vaccines: Developing New Strategies<br>against Cancer",
                    " CD11b immunophenotyping identifies<br>inflammatory profiles in the mouse and human lungs",
                    " Oral application of cytokines",
                    " SPI-1 is a missing host-range factor required<br>for replication of the attenuated modified<br>vaccinia Ankara (MVA) vaccine vector in human cells",
                    " 8th Course of the European School of<br>Neuroimmunology",
                    " Triggering through CD16 or phorbol esters<br>enhances adhesion of NK cells to laminin via very late<br>antigen 6",
                    " Sculpting the immune response to infection",
                    " Modified vaccinia virus Ankara as antigen<br>delivery system: how can we best use its potential?",
                    " Eukaryotic Initiation Factor 2α - a Downstream<br>Effector of Mammalian Target of Rapamycin - Modulates<br>DNA Repair and Cancer Response to Treatment",
                    " C-X-C Motif Chemokine 10 Contributes to the<br>Development of Neuropathic Pain by Increasing the<br>Permeability of the Blood–Spinal Cord Barrier",
                    " Effector biology during biotrophic invasion<br>of plant cells",
                    " Porcine Innate and Adaptative Immune<br>Responses to Influenza and Coronavirus Infections",
                    " AMP-Activated Kinase Restricts Rift Valley<br>Fever Virus Infection by Inhibiting Fatty Acid<br>Synthesis",
                    " Renin-angiotensin-aldosterone system and<br>COVID-19 infection",
                    " Novel nano therapeutic materials for the<br>effective treatment of rheumatoid arthritis-recent<br>insights",
                    " Mint3/Apba3 depletion ameliorates severe<br>murine influenza pneumonia and macrophage cytokine<br>production in response to the influenza virus",
                    " Coronavirus JHM-Induced Demyelinating<br>Encephalomyelitis in Rats: Influence of Immunity on the Course of<br>Disease",
                    " Anti-high mobility group box-1 monoclonal<br>antibody treatment provides protection against<br>influenza A virus (H1N1)-induced pneumonia in mice",
                    " Management of Adenoviral<br>Keratoconjunctivitis: Challenges and Solutions",
                    " Acute Lung Injury: The Injured Lung<br>Endothelium, Therapeutic Strategies for Barrier<br>Protection, and Vascular Biomarkers",
                    " Maneuvering for advantage: the genetics of<br>mouse susceptibility to virus infection",
                    " Synthetic peptides coupled to the surface of<br>liposomes effectively induce SARS<br>coronavirus-specific cytotoxic T lymphocytes and viral clearance in<br>HLA-A*0201 transgenic mice",
                    " Recent advances in understanding inherited<br>deficiencies in immunity to infections",
                    " Surviving Deadly Lung Infections: Innate Host<br>Tolerance Mechanisms in the Pulmonary System",
                    " The role of ACE2 in pulmonary<br>diseases—relevance for the nephrologist",
                    " Immunohistochemical characterisation of<br>PCV2 associate lesions in lymphoid and<br>non-lymphoid tissues of pigs with natural postweaning<br>multisystemic wasting syndrome (PMWS)",
                    " Add on the next level—the time point of the type I<br>IFN response orchestrates the immune response",
                    " Intracerebral delivery of small interfering<br>RNAs (siRNAs) using adenoviral vector protects<br>mice against lethal peripheral rabies challenge",
                    " Thy-1 depletion and integrin β3<br>upregulation-mediated PI3K-Akt-mTOR pathway activation inhibits<br>lung fibroblast autophagy in<br>lipopolysaccharide-induced pulmonary fibrosis",
                    " From APOBEC to ZAP: Diverse mechanisms used by<br>cellular restriction factors to inhibit virus<br>infections",
                    " Exceptional matters",
                    " Dissecting host cell death programs in the<br>pathogenesis of influenza",
                    " Insights into the Roles of Cyclophilin A During<br>Influenza Virus Infection",
                    " Putative contributions of circadian clock and<br>sleep in the context of SARS-CoV-2 infection",
                    " Murine Coronavirus-Induced Apoptosis in<br>17Cl-1 Cells Involves a Mitochondria-Mediated<br>Pathway and Its Downstream Caspase-8 Activation and<br>Bid Cleavage",
                    " SARS-Coronavirus Open Reading Frame-8b<br>triggers intracellular stress pathways and activates<br>NLRP3 inflammasomes",
                    " Type III Interferons in Hepatitis C Virus<br>Infection",
                    " Advancements in Nucleic Acid Based<br>Therapeutics against Respiratory Viral Infections",
                    " Alisporivir Inhibition of Hepatocyte<br>Cyclophilins Reduces HBV Replication and Hepatitis B<br>Surface Antigen Production",
                    " Cell-type specific requirements for<br>thiol/disulfide exchange during HIV-1 entry and infection",
                    " Memory CD8 T cells mediate severe<br>immunopathology following respiratory syncytial virus<br>infection",
                    " Subject index of Volume 5",
                    " Therapeutic and diagnostic implications of<br>Hsp90 activation",
                    " Discovery and Development of Toll-Like<br>Receptor 4 (TLR4) Antagonists: A New Paradigm for<br>Treating Sepsis and Other Diseases",
                    " The clinical pathology of severe acute<br>respiratory syndrome (SARS): a report from China",
                    " Animal Models of Demyelination",
                    " T(FH) cells accumulate in mucosal tissues of<br>humanized-DRAG mice and are highly permissive to HIV-1",
                    " IFN-γ– and IL-10–expressing virus<br>epitope-specific Foxp3(+) T reg cells in the central nervous<br>system during encephalomyelitis",
                    " CD163(+)CD204(+) tumor-associated<br>macrophages contribute to T cell regulation via<br>interleukin-10 and PD-L1 production in oral squamous cell<br>carcinoma",
                    " Differential and convergent utilization of<br>autophagy components by positive-strand RNA viruses",
                    " Type I Interferons as Regulators of Lung<br>Inflammation",
                    " Combination of IMOD™ and Arbidol to increase<br>their immunomodulatory effects as a novel medicine<br>to prevent and cure influenza and some other<br>infectious diseases",
                    " Potential of carbohydrate‐binding agents as<br>therapeutics against enveloped viruses",
                    " Adoptive Transfer of Infectious Bronchitis<br>Virus Primed αβ T Cells Bearing CD8 Antigen Protects<br>Chicks from Acute Infection",
                    " Tissue distribution of ACE2 protein, the<br>functional receptor for SARS coronavirus. A first step in<br>understanding SARS pathogenesis",
                    " The cyclophilin inhibitor CRV431 inhibits<br>liver HBV DNA and HBsAg in transgenic mice",
                    " Globoid cell leukodystrophy (Krabbe's<br>disease) in a Japanese domestic cat",
                    " Natural Bis-Benzylisoquinoline<br>Alkaloids-Tetrandrine, Fangchinoline, and Cepharanthine, Inhibit<br>Human Coronavirus OC43 Infection of MRC-5 Human Lung<br>Cells",
                    " Mucosal Delivery of RNAi Therapeutics",
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                    " Virus-modified exosomes for targeted RNA<br>delivery; A new approach in nanomedicine",
                    " SENDAI VIRUS",
                    " Toxin-Based Therapeutic Approaches",
                    " Lipopolysaccharide and Tumor Necrosis Factor<br>Alpha Inhibit Interferon Signaling in Hepatocytes<br>by Increasing Ubiquitin-Like Protease 18<br>(USP18) Expression",
                    " Oral Communications Tuesday 15 July<br>Respiratory and pulmonary pharmacology (14.30‐15.30)",
                    " Neuroimmunomodulation: Stress and immune<br>function: The Lovelace Institutes, Albuquerque, New<br>Mexico 7–9 October 1994",
                    " Reaction Cycles of Halogen Species in the<br>Immune Defense: Implications for Human Health and<br>Diseases and the Pathology and Treatment of Covid19",
                    " Tissue Culture Models",
                    " Does the human placenta express the canonical<br>cell entry mediators for SARS-CoV-2?",
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                    " A novel mechanism for immune regulation after<br>human lung transplantation",
                    " DGHM 2011",
                    " The Immunology of Bovine Respiratory Disease:<br>Recent Advancements",
                    " Selective gene silencing by viral delivery of<br>short hairpin RNA",
                    " Comparison of Temporal and Spatial Dynamics of<br>Seasonal H3N2, Pandemic H1N1 and Highly Pathogenic<br>Avian Influenza H5N1 Virus Infections in Ferrets",
                    " Accumulation of natural killer and cytotoxic T<br>large granular lymphocytes in the liver during virus<br>infection",
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                    " Analysis of SARS-CoV-2-controlled autophagy<br>reveals spermidine, MK-2206, and niclosamide as<br>putative antiviral therapeutics"
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                    " DPP4-directed therapeutic strategies for<br>MERS-CoV",
                    " Possible Transfusion-Related Acute Lung<br>Injury Following Convalescent Plasma Transfusion in<br>a Patient With Middle East Respiratory Syndrome",
                    " Epidemiological, demographic, and clinical<br>characteristics of 47 cases of Middle East respiratory syndrome<br>coronavirus disease from Saudi Arabia: a descriptive study",
                    " Saracatinib Inhibits Middle East Respiratory<br>Syndrome-Coronavirus Replication In Vitro",
                    " Inactivation of Middle East respiratory<br>syndrome coronavirus (MERS‐CoV) in plasma products<br>using a riboflavin‐based and ultraviolet<br>light‐based photochemical treatment",
                    " Blocking transmission of Middle East<br>respiratory syndrome coronavirus (MERS-CoV) in llamas by<br>vaccination with a recombinant spike protein",
                    " Reply to Leow",
                    " Multi-Organ Damage in Human Dipeptidyl<br>Peptidase 4 Transgenic Mice Infected with Middle East<br>Respiratory Syndrome-Coronavirus",
                    " Middle East Respiratory Syndrome Coronavirus<br>and the One Health concept",
                    " Emerging threats from zoonotic<br>coronaviruses-from SARS and MERS to 2019-nCoV",
                    " What needs to be done to control the spread of<br>Middle East respiratory syndrome coronavirus?",
                    " Antibody-mediated protection against<br>MERS-CoV in the murine model",
                    " Blockade of the C5a–C5aR axis alleviates lung<br>damage in hDPP4-transgenic mice infected with<br>MERS-CoV",
                    " Efficient Reverse Genetic Systems for Rapid<br>Genetic Manipulation of Emergent and Preemergent<br>Infectious Coronaviruses",
                    " Effectiveness of an education health<br>programme about Middle East respiratory syndrome<br>coronavirus tested during travel consultations",
                    " Middle East Respiratory Syndrome Coronavirus<br>Transmission in Extended Family, Saudi Arabia, 2014",
                    " Middle East respiratory syndrome coronavirus<br>on inanimate surfaces: A risk for health care<br>transmission",
                    " Evolutionary relationship analysis of Middle<br>East respiratory syndrome coronavirus 4a and 4b<br>protein coding sequences",
                    " Better Understanding on MERS Corona Virus<br>Outbreak in Korea",
                    " Editorial Commentary: Critical Contribution<br>of Laboratories to Outbreak Response Support for<br>Middle East Respiratory Syndrome Coronavirus",
                    " Asymptomatic MERS-CoV Infection in Humans<br>Possibly Linked to Infected Dromedaries Imported from<br>Oman to United Arab Emirates, May 2015",
                    " Efficacy of antibody-based therapies against<br>Middle East respiratory syndrome coronavirus<br>(MERS-CoV) in common marmosets",
                    " MERS, SARS and other coronaviruses as causes of<br>pneumonia",
                    " Chapter 14 Middle East Respiratory<br>Syndrome-Coronavirus (MERS-CoV) Infection",
                    " Knowledge, Attitudes and Behaviours of<br>Healthcare Workers in the Kingdom of Saudi Arabia to MERS<br>Coronavirus and Other Emerging Infectious Diseases",
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                    " Effect of Cryptosporidium parvum infection on<br>the absorptive capacity and paracellular<br>permeability of the small intestine in neonatal calves",
                    " Examination for a viral co-factor in<br>postweaning multisystemic wasting syndrome (PMWS)",
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                    " Investigation into the Role of Potentially<br>Contaminated Feed as a Source of the First-Detected<br>Outbreaks of Porcine Epidemic Diarrhea in Canada",
                    " Thermal investigation on whole plants and<br>plant tissues",
                    " Virus detection and identification using<br>random multiplex (RT)-PCR with 3'-locked random<br>primers",
                    " Population Wellness: Keeping Cats Physically<br>and Behaviorally Healthy",
                    " In Vitro Activity of Sodium New Houttuyfonate<br>Alone and in Combination with Oxacillin or<br>Netilmicin against Methicillin-Resistant<br>Staphylococcus aureus",
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                    " Microdevice‐based solid‐phase polymerase<br>chain reaction for rapid detection of pathogenic<br>microorganisms",
                    " Extra-intestinal detection of canine<br>kobuvirus in a puppy from Southern Brazil",
                    " Biosensors in clinical chemistry — 2011 update",
                    " Identification of Human Adenovirus in<br>Respiratory Samples with Luminex Respiratory Virus Panel<br>Fast V2 Assay and Real-Time Polymerase Chain<br>Reaction",
                    " An inactivated influenza D virus vaccine<br>partially protects cattle from respiratory disease<br>caused by homologous challenge",
                    " Feline infectious peritonitis: Role of the<br>feline coronavirus 3c gene in intestinal tropism and<br>pathogenicity based upon isolates from resident and adopted<br>shelter cats",
                    " Advances in MALDI Mass Spectrometry in<br>Clinical Diagnostic Applications",
                    " Construction of a multiplex allele‐specific<br>PCR‐based universal array (ASPUA) and its application to<br>hearing loss screening",
                    " Establishment of a nanoparticle-assisted<br>RT-PCR assay to distinguish field strains and<br>attenuated strains of porcine epidemic diarrhea virus",
                    " Mycobacterium avium ssp. paratuberculosis<br>High Shedding in an Adult Female Alpaca, and its<br>Implications for the Rest of the Herd",
                    " Immune-Mediated Central Nervous System<br>Disease—Current Knowledge and Recommendations",
                    " Development and efficacy of a novel<br>live-attenuated QX-like nephropathogenic infectious<br>bronchitis virus vaccine in China",
                    " Intravenous Fluid Therapy in Calves",
                    " Antibody epitope repertoire analysis enables<br>rapid antigen discovery and multiplex serology",
                    " Detection of Canine Distemper Virus in Blood<br>Samples by Reverse Transcription Loop‐Mediated<br>Isothermal Amplification",
                    " Rotavirus-mediated alteration of gut<br>microbiota and its correlation with physiological<br>characteristics in neonatal calves",
                    " Molecular and serological investigation of<br>2019-nCoV infected patients: implication of multiple<br>shedding routes",
                    " Prevalence of Korean cats with natural feline<br>coronavirus infections",
                    " A quantitative enzyme-linked immunosorbent<br>assay for bovine herpesvirus type 1 (BHV-1) antibody",
                    " Prevalence of porcine circovirus type 3 in pigs<br>in the southeastern Chinese province of Zhejiang",
                    " Experimental Dual Infection of Specific<br>Pathogen‐Free Pigs with Porcine Reproductive and<br>Respiratory Syndrome Virus and Pseudorabies Virus",
                    " A follow-up of Beagle dogs intradermally<br>infected with Leishmania chagasi in the presence or<br>absence of sand fly saliva",
                    " Genome Sequences of Porcine Epidemic Diarrhea<br>Virus: In Vivo and In Vitro Phenotypes",
                    " Haemorrhagic pneumonia in sled dogs caused by<br>Streptococcus equi subsp. zooepidemicus - one fatality and<br>two full recoveries: a case report",
                    " Application of Molecular Diagnostic<br>Techniques for Viral Testing",
                    " Evaluation of a French ELISA for the detection<br>of Salmonella Enteritidis and Salmonella<br>Typhimurium in flocks of laying and breeding hens",
                    " Virulence of current German PEDV strains in<br>suckling pigs and investigation of protective effects<br>of maternally derived antibodies",
                    " Norwalk-like calicivirus genes in farm<br>animals.",
                    " Identification of a novel canine parvovirus<br>type 2c in Taiwan",
                    " Pneumocystis carinii in Germ-Free Rats",
                    " Simple rapid method of rumen cannulation",
                    " Advanced Diagnostic Approaches and Current<br>Management of Proventricular Dilatation Disease",
                    " Current applications and future trends of<br>molecular diagnostics in clinical bacteriology",
                    " Immunohistochemical Staining for Detection<br>of Porcine Epidemic Diarrhea Virus in Tissues",
                    " Development and evaluation of a rapid<br>detection assay for severe fever with thrombocytopenia<br>syndrome virus based on reverse-transcription<br>recombinase polymerase amplification",
                    " Comparison of the immune response to<br>vaccination with pigeon circovirus recombinant capsid<br>protein (PiCV rCP) in pigeons uninfected and<br>subclinically infected with PiCV",
                    " Molecular characterization of<br>Cryptosporidium parvum from two different Japanese<br>prefectures, Okinawa and Hokkaido",
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                    " Molecular-based isothermal tests for field<br>diagnosis of malaria and their potential contribution to<br>malaria elimination",
                    " Rapid Identification of Seven Waterborne<br>Exophiala Species by RCA DNA Padlock Probes",
                    " An Activated GOPS‐poly‐L‐Lysine‐ Coated<br>Glass Surface for the Immobilization of 60mer<br>Oligonucleotides",
                    " Development of qPCR platform with probes for<br>quantifying prevalent and biomedically relevant human gut<br>microbial taxa",
                    " Comparative Evaluation of Three<br>Preprocessing Methods for Extraction and Detection of<br>Influenza A Virus Nucleic Acids from Sputum",
                    " Brain Microbial Populations in HIV/AIDS:<br>α-Proteobacteria Predominate Independent of Host Immune Status",
                    " Detection and differentiation of field and<br>vaccine strains of canine distemper virus using<br>reverse transcription followed by nested real time PCR<br>(RT-nqPCR) and RFLP analysis",
                    " Rapid Detection of Avian Infectious<br>Bronchitis Virus by Reverse Transcriptase-Loop Mediated<br>Isothermal Amplification",
                    " DNA vaccination of poultry: The current status<br>in 2015",
                    " Detection of Plant DNA in the Bronchoalveolar<br>Lavage of Patients with Ventilator-Associated<br>Pneumonia",
                    " Performance of LBSap Vaccine after<br>Intradermal Challenge with L. infantum and Saliva of Lu.<br>longipalpis: Immunogenicity and Parasitological<br>Evaluation",
                    " Evaluation of clinical applicability of<br>reverse transcription-loop-mediated isothermal<br>amplification assay for detection and subtyping of Influenza<br>A viruses",
                    " High detection rate of dog circovirus in<br>diarrheal dogs",
                    " Molecular epidemiology and genetic variation<br>analyses of porcine circovirus type 2 isolated from<br>Yunnan Province in China from 2016-2019",
                    " Seroprevalence of porcine respiratory<br>coronavirus infection in Spanish breeding sows",
                    " Detection of 2019 novel coronavirus<br>(2019-nCoV) by real-time RT-PCR",
                    " Cutaneous Phaeohyphomycosis Caused by<br>Exophiala attenuata in a Domestic Cat",
                    " Differences in the intestinal microbiota<br>between uninfected piglets and piglets infected with<br>porcine epidemic diarrhea virus",
                    " Serological assays for severe acute<br>respiratory syndrome coronavirus 2 (SARS-CoV-2), March<br>2020",
                    " Molecular epidemiology of rubella viruses<br>involved in congenital rubella infections in São Paulo,<br>Brazil, between 1996 and 2009",
                    " Development of real-time PCR assays for<br>detection and quantification of human bocavirus",
                    " Spatial patterns of Bovine Corona Virus and<br>Bovine Respiratory Syncytial Virus in the Swedish<br>beef cattle population",
                    " Development of Real-Time PCR Array for<br>Simultaneous Detection of Eight Human Blood-Borne Viral<br>Pathogens",
                    " Molecular Approaches to Recognize Relevant<br>and Emerging Infectious Diseases in Animals",
                    " Molecular detection and characterisation of<br>feline morbillivirus in domestic cats in Malaysia",
                    " Cocirculation of Four Infectious Bronchitis<br>Virus Lineages in Broiler Chickens in the Eastern<br>Region of Saudi Arabia from 2012 to 2014",
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                    " Utility of an immunocytochemical assay using<br>aqueous humor in the diagnosis of feline infectious<br>peritonitis",
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                    " Dihydromyricetin: A review on identification<br>and quantification methods, biological<br>activities, chemical stability, metabolism and<br>approaches to enhance its bioavailability",
                    " Canine Coronavirus Infection in Turkish Dog<br>Population",
                    " Dilated Cardiomyopathy in Juvenile<br>Portuguese Water Dogs",
                    " Optimal fecal assessment",
                    " Canine Isosporosis – Epidemiology of Field and<br>Experimental Infections",
                    " Clinical Approach to Dermatologic Disease in<br>Exotic Animals",
                    " Development of a rapid recombinase polymerase<br>amplification assay for the detection of Streptococcus<br>pneumoniae in whole blood",
                    " A new visually improved and sensitive loop<br>mediated isothermal amplification (LAMP) for<br>diagnosis of symptomatic falciparum malaria",
                    " Reverse Genetics for Type I Feline Coronavirus<br>Field Isolate To Study the Molecular Pathogenesis of<br>Feline Infectious Peritonitis",
                    " Replacement Management in Cattle | Breeding<br>Standards and Pregnancy Management",
                    " Development of a duplex real-time RT-qPCR<br>assay to monitor genome replication, gene<br>expression and gene insert stability during in vivo<br>replication of a prototype live attenuated canine<br>distemper virus vector encoding SIV gag",
                    " Absolute quantitation of infectious salmon<br>anaemia virus using different real-time reverse<br>transcription PCR chemistries",
                    " Description of the first acute bovine diarrhea<br>virus-2 outbreak in Israel",
                    " Isolation and Characterization of<br>Polymorphic Microsatellite Markers for the Masked Palm<br>Civet (Paguma larvata)",
                    " Progress in the Development of Intrinsically<br>Conducting Polymer Composites as Biosensors",
                    " Effects of feeding pregnant beef cows<br>selenium-enriched alfalfa hay on selenium status and antibody<br>titers in their newborn calves",
                    " Mathematical model to reduce loop mediated<br>isothermal amplification (LAMP) false‐positive<br>diagnosis",
                    " Ultrarapid diagnosis, microscope imaging,<br>genome sequencing, and culture isolation of<br>SARS-CoV-2",
                    " Research progress on human infection with<br>avian influenza H7N9",
                    " Detection of contaminants in water supply: A<br>review on state-of-the-art monitoring technologies<br>and their applications",
                    " EQUINE HERPESVIRUSES 4. CONCURRENT INFECTION<br>IN HORSES WITH STRANGLES AND CONJUNCTIVITIS",
                    " Development and evaluation of real-time PCR<br>assays for the detection of the newly identified KI and<br>WU polyomaviruses",
                    " The Utility of Acute‐Phase Proteins in the<br>Assessment of Treatment Response in Dogs With Bacterial<br>Pneumonia",
                    " Reverse transcription-loop-mediated<br>isothermal amplification for the detection of rodent<br>coronaviruses",
                    " Spread of Canine Influenza A(H3N2) Virus,<br>United States",
                    " Application-oriented mathematical<br>algorithms for group testing",
                    " Post-mortem diagnosis, of cytomegalovirus<br>and varicella zoster virus co-infection by<br>combined histology and tissue molecular biology, in a<br>sudden unexplained infant death",
                    " List of contents",
                    " Housing And Welfare",
                    " Genetic epidemiology of porcine epidemic<br>diarrhoea virus circulating in China in 2012–2017 based<br>on spike gene",
                    " A novel method for the capture-based<br>purification of whole viral native RNA genomes",
                    " Diagnosis of Gallbladder Cancer Using<br>Matrix-Assisted Laser Desorption/Ionization Time-of-Flight<br>Profiling",
                    " Prior infection of pigs with a recent human H3N2<br>influenza virus confers minimal cross‐protection<br>against a European swine H3N2 virus",
                    " A cohort study of the effect of winter dysentery<br>on herd-level milk production",
                    " Porcine epidemic diarrhea virus (PEDV)<br>introduction into a naive Dutch pig population in 2014",
                    " Development and evaluation of an efficient<br>3′-noncoding region based SARS coronavirus (SARS-CoV)<br>RT-PCR assay for detection of SARS-CoV infections",
                    " Successful cross-protective efficacy<br>induced by heat-adapted live attenuated<br>nephropathogenic infectious bronchitis virus derived from a<br>natural recombinant strain",
                    " Bovine coronaviruses from the respiratory<br>tract: Antigenic and genetic diversity",
                    " Hendra Virus Outbreak with Novel Clinical<br>Features, Australia"
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                    " Optimal control of an SIR epidemic through<br>finite-time non-pharmaceutical intervention",
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                    " On predicting the novel COVID-19 human<br>infections by using Infectious Disease modelling method<br>in the Indian State of Tamil Nadu during 2020",
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                    " Bayesian Inference of COVID-19 Spreading<br>Rates in South Africa",
                    " Molecular mechanism of action of repurposed<br>drugs and traditional Chinese medicine used for the<br>treatment of patients infected with COVID-19: A<br>systematic review",
                    " SARS-CoV-2 infection in London, England:<br>Impact of lockdown on community point-prevalence,<br>March-May 2020",
                    " Clinical and historical features associated<br>with severe COVID-19 infection: a systematic<br>review",
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                    " Optimal Pool Size for COVID-19 Group Testing",
                    " Preliminary study to identify severe from<br>moderate cases of COVID-19 using NLR&RDW-SD<br>combination parameter",
                    " Coronametrics: The UK turns the corner",
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                    " COVID-19 Pandemic Prediction for Hungary; a<br>Hybrid Machine Learning Approach",
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                    " Human Mobility Restrictions and the Spread of<br>the Novel Coronavirus (2019-nCoV) in China",
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                    " Early and massive testing saves lives:<br>COVID-19 related infections and deaths in the United<br>States during March of 2020",
                    " Predicting the cumulative number of cases for<br>the COVID-19 epidemic in China from early data",
                    " Efficacy of face mask in preventing<br>respiratory virus transmission: a systematic review and<br>meta-analysis",
                    " Projection of hospitalization by COVID-19 in<br>Brazilfollowing different social distances policies",
                    " A Rapid Review of the Asymptomatic Proportion<br>of PCR-Confirmed SARS-CoV-2 Infections in<br>Community Settings",
                    " Association of County-Level Socioeconomic<br>and Political Characteristics with Engagement in<br>Social Distancing for COVID-19",
                    " Metapopulation modeling of COVID-19<br>advancing into the countryside: an analysis of<br>mitigation strategies for Brazil",
                    " Using predicted imports of 2019-nCoV cases to<br>determine locations that may not be identifying all<br>imported cases",
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                    " Coast-to-coast spread of SARS-CoV-2 in the<br>United States revealed by genomic epidemiology",
                    " A mathematical model for estimating the<br>age-specific transmissibility of a novel coronavirus",
                    " Proactive social distancing mitigates<br>COVID-19 outbreaks within a month across 58 mainland<br>China cities",
                    " An alternative workflow for molecular<br>detection of SARS-CoV-2 - escape from the NA extraction<br>kit-shortage"
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                    " Robot assisted surgery during the COVID-19<br>pandemic, especially for gynecological cancer: a<br>statement of the Society of European Robotic<br>Gynaecological Surgery (SERGS)",
                    " Letter: Strategies for Prevention and Control<br>of 2019 Novel Coronavirus Infection Among<br>Medical Staff",
                    " Infants Born to Mothers With a New Coronavirus<br>(COVID-19)",
                    " A severe case with co-infection of SARS-CoV-2<br>and common respiratory pathogens",
                    " Olfactory Bulb Magnetic Resonance Imaging in<br>SARS-CoV-2-Induced Anosmia: The First Report",
                    " Collaborative Management Strategies for Drug<br>Shortages in Neurocritical Care",
                    " Clinical features, genetics, and outcome of<br>pediatric patients with hemophagocytic<br>lymphohistiocytosis in Korea: report of a nationwide survey from<br>Korea Histiocytosis Working Party",
                    " Collagen Vascular Diseases and Disorders of<br>Connective Tissue",
                    " COVID-19 in people living with human<br>immunodeficiency virus: a case series of 33 patients",
                    " Recommendations for Triage, Prioritization<br>and Treatment of Breast Cancer Patients During the<br>COVID-19 Pandemic",
                    " Specificity, kinetics and longevity of<br>antibody responses to avian influenza A(H7N9) virus<br>infection in humans",
                    " Physicians Abstracts",
                    " Pulmonary Infections",
                    " Chapter 96 Critical Care Viral Infections",
                    " Parasitic Diseases of the Lung",
                    " Opportunistic bacterial, viral and fungal<br>infections of the lung",
                    " Department of Homeland Security national<br>planning scenarios: a spectrum of imaging findings to<br>educate the radiologists",
                    " Biologics in Rhinology – Forthcoming<br>Personalized Concepts: the Future Starts Today",
                    " Treating hypoxemic patients with SARS-COV-2<br>pneumonia: Back to applied physiology",
                    " Comparison of initial high resolution<br>computed tomography features in viral pneumonia<br>between metapneumovirus infection and severe acute<br>respiratory syndrome",
                    " Treatment of Severe Pneumonia due to COVID-19<br>with Peginterferon alfa 2a",
                    " Different location, same results?",
                    " 27th International Congress of the European<br>Association for Endoscopic Surgery (EAES) Sevilla, Spain,<br>12–15 June 2019",
                    " Coronavirus Disease 2019 (COVID-19)<br>Pneumonia in a Hemodialysis Patient",
                    " Interleukin-2 after autologous stem cell<br>transplantation for hematologic malignancy: a phase I/II study",
                    " Diffusion‐weighted MRI abnormalities in an<br>outbreak of Streptococcus agalactiae Serotype III,<br>multilocus sequence type 283 meningitis",
                    " Clinical analysis of ten pregnant women with<br>COVID-19 in Wuhan, China: A retrospective study",
                    " Lung Transplantation and Precision Medicine",
                    " Healthcare-Associated Infections in<br>Pediatrics",
                    " Our Response to COVID-19 as Endocrinologists<br>and Diabetologists",
                    " IgA-Ab response to spike glycoprotein of<br>SARS-CoV-2 in patients with COVID-19: A longitudinal<br>study",
                    " Low-cost, easy-to-build non-invasive<br>pressure support ventilator for under-resourced<br>regions: open source hardware description,<br>performance and feasibility testing",
                    " The prevalence of viral infections in children<br>with cystic fibrosis in a tertiary care center in<br>Saudi Arabia",
                    " Characteristics and outcomes of oral<br>antibiotic treated pulmonary exacerbations in children<br>with cystic fibrosis()",
                    " Management of inflammatory bowel disease<br>patients in the COVID-19 pandemic era: a Brazilian<br>tertiary referral center guidance",
                    " A Marker of Systemic Inflammation or Direct<br>Cardiac Injury: Should Cardiac Troponin Levels be<br>Monitored in COVID-19 Patients?",
                    " Extubation and Changing Endotracheal Tubes",
                    " Gastrointestinal Infection Could Be New Focus<br>for Coronavirus Diagnosis",
                    " COVID-19 in Rheumatic Disease Patients on<br>Immunosuppressive Agents",
                    " Translating Research into Clinical Practice:<br>Functional Recovery Post Total Hip Arthroplasty Using<br>Outcomes Gathered in the Usual Physical Therapy<br>Practice Setting",
                    " Covert COVID-19 complications: Continuing<br>the use of evidence-based drugs to minimize<br>potentially lethal indirect effects of the pandemic in<br>stroke patients",
                    " Neonatal Emergencies",
                    " Poster Session Abstracts",
                    " The Effectiveness of Convalescent Plasma and<br>Hyperimmune Immunoglobulin for the Treatment of Severe<br>Acute Respiratory Infections of Viral Etiology: A<br>Systematic Review and Exploratory Meta-analysis",
                    " Macrolide-based regimens in absence of<br>bacterial co-infection in critically ill H1N1 patients<br>with primary viral pneumonia",
                    " Acute Respiratory Distress Syndrome as an<br>Organ Phenotype of Vascular Microthrombotic<br>Disease: Based on Hemostatic Theory and Endothelial<br>Molecular Pathogenesis",
                    " Imaging features and evolution on CT in 100<br>COVID-19 pneumonia patients in Wuhan, China",
                    " Infection with a respiratory virus before<br>hematopoietic cell transplantation is associated with<br>alloimmune-mediated lung syndromes",
                    " Inhaled and exhaled nitric oxide",
                    " Considerations for the Treatment of<br>Oesophageal Cancer With Radiotherapy During the COVID-19<br>Pandemic",
                    " Encephalitis Associated with COVID-19<br>Infection in an 11 Year-Old Child",
                    " Transmission risk of patients with COVID-19<br>meeting discharge criteria should be interpreted with<br>caution",
                    " Expert recommendations on blood purification<br>treatment protocol for patients with severe COVID-19():<br>Recommendation and consensus",
                    " Management of chickenpox in pregnant women: an<br>Italian perspective",
                    " Index Patient and SARS Outbreak in Hong Kong",
                    " Efficacy and Safety of Lianhuaqingwen<br>Capsules, a repurposed Chinese Herb, in Patients with<br>Coronavirus disease 2019: A multicenter, prospective,<br>randomized controlled trial",
                    " Surgical Stabilization of Rib Fractures<br>during the COVID-19 Pandemic",
                    " The clinical implication of dynamic<br>neutrophil to lymphocyte ratio and D-dimer in COVID-19: A<br>retrospective study in Suzhou China",
                    " Neuroradiological features in COVID-19<br>patients: first evidence in a complex scenario",
                    " Extracorporeal membrane oxygenation for<br>systemic lupus erythematosus (SLE) with severe ARDS",
                    " Coronavirus (COVID-19) Outbreak: What the<br>Department of Radiology Should Know",
                    " Case report: atypical presentation of<br>vancomycin induced DRESS syndrome: a case report and<br>review of the literature",
                    " Antiviral Agents☆",
                    " Data on the stability of darunavir/cobicistat<br>suspension after tablet manipulation",
                    " Outcomes of hematopoietic stem cell<br>transplantation for Hurler's syndrome in Europe: a risk factor<br>analysis for graft failure",
                    " New-onset atrial fibrillation can be falsely<br>associated with increased length of stay in ICU due to<br>immortal time bias",
                    " Intestinal Transplantation in Children: A<br>Review of Immunotherapy Regimens",
                    " 1-Year Pulmonary Function and Health Status in<br>Survivors of Severe Acute Respiratory Syndrome",
                    " Challenges in the interpretation and<br>application of typical imaging features of COVID-19",
                    " Prone to survive and the priority rule in<br>science",
                    " High Prevalence of Concurrent<br>Gastrointestinal Manifestations in Patients with SARS-CoV-2:<br>Early Experience from California",
                    " Arterial hypertension and risk of death in<br>patients with COVID-19 infection: systematic review<br>and meta-analysis",
                    " In reply: Spinal anesthesia for Cesarean<br>delivery in women with COVID-19 infection: questions<br>regarding the cause of hypotension",
                    " Treatment of sepsis in an intensive care unit",
                    " Mycobacterial Sepsis and Multiorgan Failure<br>Syndrome",
                    " Nutrition therapy in critical illness: a<br>review of the literature for clinicians",
                    " Decrease in acute coronary syndrome<br>presentations during the COVID19 pandemic in upstate New York",
                    " Herbal drug BNO 1016 is safe and effective in the<br>treatment of acute viral rhinosinusitis",
                    " Brainstem dysfunction in critically ill<br>patients",
                    " Arrhythmic profile and 24-hour QT interval<br>variability in COVID-19 patients treated with<br>Hydroxychloroquine and azithromycin",
                    " Lipid-lowering therapy and<br>renin-angiotensin-aldosterone system inhibitors in the era of the COVID-19<br>pandemic",
                    " Pneumonia Awareness Year, 2004: Scientific<br>Impact Through Publications in Archivos de<br>Bronconeumología",
                    " German recommendations for critically ill<br>patients with COVID‑19",
                    " Oral Presentations_Tuesday",
                    " High-Frequency Oscillatory Ventilation for<br>Adult Patients With ARDS",
                    " Biomarkers of Pulmonary Diseases",
                    " Bacterial–viral load and the immune response<br>in stable and exacerbated COPD: significance and<br>therapeutic prospects",
                    " Clinical observation and management of<br>COVID-19 patients",
                    " Accuracy of ventilator-associated events for<br>the diagnosis of ventilator-associated lower<br>respiratory tract infections",
                    " Management of Ventilator-associated<br>Pneumonia",
                    " Neutropenic Fever in the Intensive Care Unit",
                    " Experience with ARDS caused by tuberculosis in<br>a respiratory intensive care unit",
                    " Secretory phospholipase A2 pathway in various<br>types of lung injury in neonates and infants: a<br>multicentre translational study",
                    " Utility of adding Pneumocystis jirovecii DNA<br>detection in nasopharyngeal aspirates in<br>immunocompromised adult patients with febrile pneumonia",
                    " Pathophysiological Characteristics and<br>Therapeutic Approaches for Pulmonary Injury and<br>Cardiovascular Complications of Coronavirus Disease 2019",
                    " Biological Agents and Terror Medicine",
                    " Thin-section Computed Tomography Detects<br>Long-term Pulmonary Sequelae 3 Years after Novel<br>Influenza A Virus-associated Pneumonia",
                    " Incidence and clinical characteristics of<br>posttransplant lymphoproliferative disorders: report from a<br>single center",
                    " Psychiatric Findings in Suspected and<br>Confirmed Middle East Respiratory Syndrome Patients<br>Quarantined in Hospital: A Retrospective Chart Analysis",
                    " Allografts in Anterior Cruciate Ligament<br>Reconstruction",
                    " An untreatable dyspnoea: more defendants<br>under investigation",
                    " Bioactive compounds with possible inhibitory<br>activity of Angiotensin-Converting Enzyme-II; a gate<br>to manage and prevent COVID-19",
                    " IFNL4 ss469415590 Variant Is Associated with<br>Treatment Response in Japanese HCV Genotype 1 Infected<br>Individuals Treated with IFN-Including Regimens",
                    " MONDAY: POSTERS",
                    " Temporal profiles of viral load in posterior<br>oropharyngeal saliva samples and serum antibody responses<br>during infection by SARS-CoV-2: an observational<br>cohort study",
                    " Informed Consent for Surgery During COVID-19",
                    " An Approach to a Pulmonary Infiltrate in Solid<br>Organ Transplant Recipients",
                    " E-cigarette, or Vaping, Product<br>Use-associated Lung Injury (EVALI): Acute Lung Illness within<br>Hours of Switching from Traditional to E-cigarettes",
                    " Novel Coronavirus (2019-nCoV) in Disguise",
                    " Association of Cardiovascular Disease with<br>Coronavirus Disease 2019 (COVID-19) Severity: A<br>Meta-Analysis",
                    " Silencing the cytokine storm: the use of<br>intravenous anakinra in haemophagocytic<br>lymphohistiocytosis or macrophage activation syndrome",
                    " Does lopinavir really inhibit SARS-CoV-2?",
                    " BMT Settings, Infection and Infection Control",
                    " SARS: ventilatory and intensive care",
                    " How and why rheumatologists are relevant to<br>COVID-19?",
                    " Myocardial injury is associated with<br>in-hospital mortality of confirmed or suspected COVID-19<br>in Wuhan, China: A single center retrospective<br>cohort study",
                    " COVID-19 and diabetes: The why, the what and the<br>how",
                    " Intestinal transplantation in children:<br>current status",
                    " Treatment of Crimean-Congo Hemorrhagic Fever",
                    " Response to Huang et al. “Herpesviridae<br>reactivation for poor outcome in ARDS patients with ECMO:<br>criminal or witness?”",
                    " Granulomatosis with polyangiitis: clinical<br>course and outcome of 60 patients from a single center<br>in South India",
                    " Deep learning-based multi-view fusion model<br>for screening 2019 novel coronavirus pneumonia: a<br>multicentre study",
                    " Spotted Fever Rickettsiosis in a Wildlife<br>Researcher in Sabah, Malaysia: A Case Study",
                    " Epidemiology of Acute Respiratory Failure in<br>Patients with HM (ICU Only)",
                    " Impact of multiplex molecular assay<br>turn-around-time on antibiotic utilization and clinical<br>management of hospitalized children with acute<br>respiratory tract infections",
                    " Mumps Virus: Modification of the<br>Identify-Isolate-Inform Tool for Frontline Healthcare Providers",
                    " Low C-reactive protein values at admission<br>predict mortality in patients with severe<br>community-acquired pneumonia caused by Streptococcus pneumoniae<br>that require intensive care management",
                    " Aerosol Barrier Hood for Use in the Management<br>of Critically Ill Adults With COVID-19",
                    " Mobile X-rays are highly valuable for<br>critically ill COVID patients",
                    " Exacerbations Etiology and Pathophysiologic<br>Mechanisms",
                    " Cardiac Valves: Another “Disaster-Hit Area”<br>of COVID-19 Patients?",
                    " Miller Fisher syndrome with bilateral vocal<br>cord paralysis: a case report",
                    " Haploidentical Stem Cell Transplantation in<br>Children With Hematological Malignancies Using αβ(+)<br>T-Cell Receptor and CD19(+) Cell Depleted Grafts:<br>High CD56(dim)/CD56(bright) NK Cell Ratio Early<br>Following Transplantation Is Associated With Lower<br>Relapse Incidence and Better Outcome",
                    " Imaging of Pulmonary Infections",
                    " COVID-19 and Tuberculosis: A mathematical<br>model based forecasting in Delhi, India",
                    " Gastroenteritis in Auckland: An aetiological<br>and clinical study",
                    " Acute Respiratory Infections in a Recently<br>Arrived Traveler to Your Part of the World*",
                    " Impact of a modification of the clinical<br>practice guide of the American Academy of Pediatrics in<br>the management of severe acute bronchiolitis in a<br>pediatric intensive care unit",
                    " The Role of Repeat Chest CT Scan in the COVID-19<br>Pandemic",
                    " Cerebral Venous Thrombosis: Atypical<br>Presentation of COVID-19 in the Young",
                    " COVID-19: Gastrointestinal Manifestations<br>and Potential Fecal–Oral Transmission",
                    " Clinical characteristics and outcomes of<br>patients with severe covid-19 with diabetes",
                    " Association of the insulin resistance marker<br>TyG index with the severity and mortality of<br>COVID-19",
                    " No SARS-CoV-2 detected in amniotic fluid in<br>mid-pregnancy",
                    " Imaging of Coronavirus Disease 2019: A Chinese<br>Expert Consensus Statement",
                    " Glucocorticoids (as an Etiologic Factor)",
                    " Current Situation and Perspectives of<br>Clinical Study in Integrative Medicine in China",
                    " Tocilizumab therapy reduced intensive care<br>unit admissions and/or mortality in COVID-19<br>patients",
                    " How do we decide to de-isolate COVID-19<br>patients?",
                    " COVID-19, superinfections and antimicrobial<br>development: What can we expect?",
                    " COVID-19 and diabetes: is metformin a friend or<br>foe?",
                    " Community-Acquired Respiratory<br>Paramyxovirus Infection After Allogeneic Hematopoietic<br>Cell Transplantation: A Single-Center Experience",
                    " SARS Patients and Need for Treatment",
                    " Community-Acquired Pneumonia",
                    " Analysis on the Pathogenesis of Symptomatic<br>Pulmonary Embolism with Human Genomics",
                    " Risk Factors for Death from Influenza<br>A(H1N1)pdm09, State of São Paulo, Brazil, 2009",
                    " What the Intensivists Need to Know About<br>Critically Ill Myeloma Patients",
                    " Radiation Therapy in King County, Washington<br>During the COVID-19 Pandemic: Balancing Patient<br>Care, Transmission Mitigation, and Resident<br>Training",
                    " Colchicine may not be effective in COVID-19<br>infection; it may even be harmful?",
                    " Global Initiative for Chronic Obstructive<br>Lung Disease strategy for the diagnosis,<br>management and prevention of chronic obstructive<br>pulmonary disease: An Asia–Pacific perspective",
                    " Use of the Fluocinolone Acetonide<br>Intravitreal Implant for the Treatment of Noninfectious<br>Posterior Uveitis: 3-Year Results of a Randomized<br>Clinical Trial in a Predominantly Asian Population",
                    " PET imaging of COVID-19: the target and the<br>number",
                    " Dermatologic Emergencies",
                    " Asthma & Allergy SIG: Poster Session 1",
                    " Comment je fais: Prise en charge des patients en<br>Radiologie Interventionnelle Oncologique en période de<br>pandémie au SARS-CoV-2",
                    " The index case of SARS-CoV-2 in Scotland",
                    " Cardiac problem and MERS",
                    " Abstracts for MASCC/ISOO Annual Meeting 2019",
                    " Surfactant replacement therapy in acute<br>respiratory distress syndrome from viral pneumonia",
                    " Subjective neurological symptoms frequently<br>occur in patients with SARS-CoV2 infection",
                    " Chloroquine and hydroxychloroquine in the<br>management of COVID-19: much kerfuffle but little<br>evidence",
                    " Inpatient Care of Patients with COVID-19: A<br>Guide for Hospitalists",
                    " Clinical characteristics of IgG4-RD patients<br>infected with COVID-19 in Hubei, China",
                    " Incidentally Diagnosed COVID-19 Infection in<br>Trauma Patients; a Clinical Experience",
                    " Durable Survival Outcomes in Primary and<br>Secondary Central Nervous System Lymphoma After<br>High-dose Chemotherapy and Autologous Stem Cell<br>Transplantation Using a Thiotepa, Busulfan, and<br>Cyclophosphamide Conditioning Regimen",
                    " Experience in managing an urban massive burn<br>incident: The Hangzhou bus attack on 5 July 2014",
                    " Poster Sessions",
                    " Altered Lipid Metabolism in Recovered SARS<br>Patients Twelve Years after Infection",
                    " COVID-19 pneumonia: different respiratory<br>treatments for different phenotypes?",
                    " Rewriting the rules for care of MDS and AML<br>patients in the time of COVID-19",
                    " CSANZ Position Statement on the Evaluation of<br>Patients Presenting With Suspected Acute Coronary<br>Syndromes During the COVID-19 Pandemic #",
                    " Systematic review of the prevalence of current<br>smoking among hospitalized COVID-19 patients in<br>China: could nicotine be a therapeutic option?",
                    " Chest Computed Tomography Abnormalities and<br>Their Relationship to the Clinical Manifestation of<br>Respiratory Syncytial Virus Infection in a Genetically<br>Confirmed Outbreak",
                    " Epidemiological investigation of the 119th<br>confirmed Middle East Respiratory Syndrome coronavirus<br>case with an indefinite mode of transmission during<br>the Pyeongtaek outbreak in Korea",
                    " Rituximab-Related Pulmonary Toxicity",
                    " Visiting a sauna: does inhaling hot dry air<br>reduce common cold symptoms? A randomised controlled<br>trial",
                    " CORONAVIRUS IN PREGNANCY AND DELIVERY: RAPID<br>REVIEW AND EXPERT CONSENSUS",
                    " Deep learning Enables Accurate Diagnosis of<br>Novel Coronavirus (COVID-19) with CT images",
                    " H1N1 infection and acute respiratory failure:<br>Can we give non-invasive ventilation a chance?",
                    " Importance of SARs-Cov-2 anosmia: From<br>phenomenology to neurobiology",
                    " Cluster of necrotizing enterocolitis in a<br>neonatal intensive care unit: New Mexico, 2007",
                    " Finding Covid-19 from Chest X-rays using Deep<br>Learning on a Small Dataset",
                    " Sporadic cases of adult measles: a research<br>article",
                    " Control of a hospital-wide<br>vancomycin-resistant Enterococci outbreak",
                    " Should ACE Inhibitors and Angiotensin<br>Receptor Blockers Be Withdrawn in the Current Setting of<br>COVID-19 Infection?",
                    " Letter to the Editor in Response to article:<br>“Clinical considerations for patients with diabetes in<br>times of COVID-19 epidemic (Gupta et al.)",
                    " Year in review in intensive care medicine,<br>2004. I. Respiratory failure, infection, and sepsis",
                    " Physiology of the Respiratory Drive in ICU<br>Patients: Implications for Diagnosis and Treatment",
                    " Long-term outcome in acute myelogenous<br>leukemia autografted with mafosfamide-purged marrow<br>in a single institution: adverse events and<br>incidence of secondary myelodysplasia",
                    " Driving Pressure During General Anesthesia<br>for Open Abdominal Surgery (DESIGNATION): study<br>protocol of a randomized clinical trial",
                    " Outcomes of Influenza A(H1N1)pdm09 Virus<br>Infection: Results from Two International Cohort Studies",
                    " Risks and Epidemiology of Infections After<br>Hematopoietic Stem Cell Transplantation",
                    " Retained copper fragments following removal<br>of a copper intrauterine device: Two case reports",
                    " High-Altitude Pulmonary Edema",
                    " Coronavirus Infections in the Central Nervous<br>System and Respiratory Tract Show Distinct Features<br>in Hospitalized Children",
                    " ECR 2014, Part A",
                    " Renal histopathological analysis of 26<br>postmortem findings of patients with COVID-19 in China",
                    " Acute Hyperglycemic Crises with Coronavirus<br>Disease-19: Case Reports",
                    " Multiple organ failure and coma as initial<br>presentation of pheochromocytoma in a patient with multiple<br>endocrine neoplasia (MEN) type II A",
                    " A randomized, controlled trial of triple<br>antiviral therapy as initial treatment of chronic<br>hepatitis C in HIV-infected patients",
                    " Safety and efficacy of different anesthetic<br>regimens for parturients with COVID-19 undergoing<br>Cesarean delivery: a case series of 17 patients",
                    " Postoperative Liver Failure",
                    " Prevention and management of oral infections<br>in cancer patients",
                    " Diagnostic Testing or Empirical Therapy for<br>Patients Hospitalized with Suspected Influenza: What<br>to Do?",
                    " Acute renal impairment in<br>coronavirus-associated severe acute respiratory syndrome",
                    " Pneumonia After Thoracic Surgery",
                    " Radiological and Nuclear Terrorism: The<br>Oncologic Emergency Response",
                    " Corticosteroid use in selected patients with<br>severe Acute Respiratory Distress Syndrome related<br>to Covid-19",
                    " A comparative epidemiologic analysis of SARS<br>in Hong Kong, Beijing and Taiwan",
                    " Interventional Radiology Procedures for<br>COVID-19 Patients: How we Do it",
                    " Clinical features of COVID-19 in elderly<br>patients: A comparison with young and middle-aged<br>patients",
                    " Relevance of enriched expression of<br>SARS-CoV-2 binding receptor ACE2 in gastrointestinal<br>tissue with pathogenesis of digestive symptoms,<br>diabetes-associated mortality, and disease recurrence in COVID-19<br>patients",
                    " Cost‐Effective Antibiotic Prescribing",
                    " The New Challenge of Geriatrics: Saving Frail<br>Older People from the SARS-CoV-2 Pandemic Infection",
                    " Blood safety and the choice of anti‐hemophilic<br>factor concentrate",
                    " The role of helium gas in medicine",
                    " Detectable serum SARS-CoV-2 viral load<br>(RNAaemia) is closely correlated with drastically<br>elevated interleukin 6 (IL-6) level in critically ill<br>COVID-19 patients",
                    " Severe weather warnings predict fracture<br>epidemics",
                    " Respiratory Viral Infections in Solid Organ<br>and Hematopoietic Stem Cell Transplantation",
                    " Primary Immunodeficiency Disorders in<br>Kuwait: First Report from Kuwait National Primary<br>Immunodeficiency Registry (2004–2006)",
                    " Abdominal Muscle Activity during Mechanical<br>Ventilation Increases Lung Injury in Severe Acute<br>Respiratory Distress Syndrome",
                    " Improved Diagnosis of the Etiology of<br>Community-Acquired Pneumonia with Real-Time Polymerase Chain<br>Reaction",
                    " COVID-19: before stopping specific infection<br>control measures, be sure to exclude the diagnosis",
                    " 2017 Peripheral Nerve Society Meeting July<br>8–12, 2017 Sitges, Barcelona, Spain",
                    " Imaging features of 2019 novel coronavirus<br>pneumonia",
                    " Letter: Surgical Management of Brain Tumor<br>Patients in the COVID-19 Era",
                    " Lung Transplantation",
                    " LUNG ULTRASOUND IN THE COVID-19 PANDEMIC: A<br>PRACTICAL GUIDE FOR OBSTETRICIANS AND GYNECOLOGISTS",
                    " COVID-19 Digestive Symptoms Mimicking<br>Internal Hernia Presentation After Roux-en-Y-Gastric<br>Bypass; Comment on “Internal Hernia in the Times of<br>COVID-19: to Laparoscope or Not to Laparoscope?”",
                    " Legionnaires’ Disease",
                    " Paediatric SIG: Poster Session",
                    " Precautions in ophthalmic practice in a<br>hospital with a major acute SARS outbreak: an experience<br>from Hong Kong"
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                    " Exploring Leptospiral proteomes to identify<br>potential candidates for vaccine design against<br>Leptospirosis using an immunoinformatics approach",
                    " Biochemical and genetic analysis of the role of<br>the viral polymerase in enterovirus<br>recombination",
                    " Human astroviruses: in silico analysis of the<br>untranslated region and putative binding sites of cellular<br>proteins",
                    " Severe acute respiratory syndrome<br>coronavirus nucleocapsid protein confers ability to<br>efficiently produce virus-like particles when<br>substituted for the human immunodeficiency virus<br>nucleocapsid domain",
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                    " Abstracts of oral presentations",
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                    " Mysterious Virus: A Review on Behavior and<br>Treatment Approaches of the Novel Coronavirus,<br>2019-nCoV",
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                    " Drosophila CG3303 is an essential<br>endoribonuclease linked to TDP-43-mediated neurodegeneration",
                    " Sensing Microbial RNA in the Cytosol",
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                    " Antisense-induced ribosomal frameshifting",
                    " Protein sequence analysis based on hydropathy<br>profile of amino acids",
                    " Interpatient mutational spectrum of human<br>coronavirus‐OC43 revealed by illumina sequencing",
                    " A deadly spillover: SARS-CoV-2 outbreak",
                    " Chapter 17 Family Coronaviridae",
                    " Investigation of C-terminal domain of SARS<br>nucleocapsid protein–Duplex DNA interaction using<br>transistors and binding-site models",
                    " Structural probing and mutagenic analysis of<br>the stem-loop required for Escherichia coli dnaX<br>ribosomal frameshifting: programmed efficiency of 50% 1<br>1 Edited By D. E. Draper",
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                    " Anti-Hemagglutinin Antibody Derived Lead<br>Peptides for Inhibitors of Influenza Virus Binding",
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                    " Peptide Mimicrying Between SARS Coronavirus<br>Spike Protein and Human Proteins Reacts with SARS<br>Patient Serum",
                    " Adp-Ribose-1”-Phosphatase Activities of the<br>Human Coronavirus 229E and Sars Coronavirus X<br>Domains",
                    " Controlling the SARS-CoV-2 Spike<br>Glycoprotein Conformation",
                    " An in vivo cell-based assay for investigating<br>the specific interaction between the SARS-CoV<br>N-protein and its viral RNA packaging sequence",
                    " Discriminating self from non-self in nucleic<br>acid sensing",
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                    " Dual Modes of Modification of Hepatitis A Virus<br>3C Protease by a Serine-derived β-Lactone:<br>Selective Crystallization and Formation of a Functional<br>Catalytic Triad in the Active Site",
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                    " Mechanisms of Cellular Membrane<br>Reorganization to Support Hepatitis C Virus Replication",
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                    " Evolution of the 5′-end of genomic rna of murine<br>coronaviruses during passages in vitro",
                    " Structure and Dynamics of Sars Coronavirus<br>Main Proteinase (M(PRO))",
                    " Potential Aggregation-Prone Regions in<br>Complementarity-Determining Regions of Antibodies and Their Contribution<br>Towards Antigen Recognition: A Computational<br>Analysis",
                    " Characterization of the norovirus 3C-like<br>protease",
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                    " Ribosomal frameshifting used in influenza A<br>virus expression occurs within the sequence<br>UCC_UUU_CGU and is in the +1 direction",
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                    " Three tachykinins in mammalian brain",
                    " Homology Models and Molecular Dynamics<br>Simulations of Main Proteinase from Coronavirus<br>Associated with Severe Acute Respiratory Syndrome (SARS)",
                    " Viral RNA structure-based strategies to<br>manipulate translation",
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                    " Discovery of potential<br>multi-target-directed ligands by targeting host-specific<br>SARS-CoV-2 structurally conserved main protease",
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                    " mRNA maturation in giant viruses: variation on<br>a theme",
                    " Evidence for Trans splicing in trypanosomes",
                    " How to Avoid a No-Deal ER Exit",
                    " Synthesis of a bacteriophage MB78 late protein<br>by novel ribosomal frameshifting()",
                    " Dynamical asymmetry exposes 2019-nCoV<br>prefusion spike",
                    " Protein‐Templated Fragment Ligations—From<br>Molecular Recognition to Drug Discovery",
                    " A SARS-CoV-2 Vaccination Strategy Focused on<br>Population-Scale Immunity",
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                    " Disordered Residues and Patterns in the<br>Protein Data Bank",
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                    " Comprehensive structural analysis of<br>designed incomplete polypeptide chains of the<br>replicase nonstructural protein 1 from the severe acute<br>respiratory syndrome coronavirus",
                    " Structural Insights into the Interaction of<br>Coronavirus Papain-Like Proteases and<br>Interferon-Stimulated Gene Product 15 from Different Species",
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                    " Benefits of random‐priming: Exhaustive<br>survey of a cDNA library from lung tissue of a SARS<br>patient",
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                    " Re-emergent Human Adenovirus Genome Type 7d<br>Caused an Acute Respiratory Disease Outbreak in<br>Southern China After a Twenty-one Year Absence",
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                    " 19. Jahrestagung der GfH, ÖGH und SGMG, 8.-10.<br>April 2008 in Hannover: Abstracts mit Autorenindex",
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                    " Targeting Membrane-Bound Viral RNA Synthesis<br>Reveals Potent Inhibition of Diverse Coronaviruses<br>Including the Middle East Respiratory Syndrome Virus",
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                    " Egr-1 regulates RTA transcription through a<br>cooperative involvement of transcriptional regulators",
                    " (+)-Catechin inhibition of transmissible<br>gastroenteritis coronavirus in swine testicular cells is<br>involved its antioxidation",
                    " In-Depth Analysis of the Antibody Response of<br>Individuals Exposed to Primary Dengue Virus Infection",
                    " Quercetin 7-rhamnoside reduces porcine<br>epidemic diarrhea virus replication via independent<br>pathway of viral induced reactive oxygen species",
                    " Gene optimization leads to robust expression<br>of human respiratory syncytial virus<br>nucleoprotein and phosphoprotein in human cells and<br>induction of humoral immunity in mice",
                    " A novel auto-cleavage assay for studying<br>mutational effects on the active site of severe acute<br>respiratory syndrome coronavirus 3C-like protease",
                    " The interaction of the SARS coronavirus<br>non-structural protein 10 with the cellular oxido-reductase<br>system causes an extensive cytopathic effect",
                    " Identification of Plasmodium falciparum<br>proteoforms from liver stage models",
                    " Retardation of cell growth by avian reovirus<br>p17 through the activation of p53 pathway",
                    " The Ubiquitin Proteasome System Plays a Role in<br>Venezuelan Equine Encephalitis Virus Infection",
                    " The output of the tRNA modification pathways<br>controlled by the Escherichia coli MnmEG and MnmC enzymes<br>depends on the growth conditions and the tRNA species",
                    " Phage Display: A Powerful Technology for the<br>Generation of High Specificity Affinity Reagents from<br>Alternative Immune Sources",
                    " Increased Viral Titers and Subtle Changes in<br>Plaque Morphology Upon Passage of SARS-CoV in Cells<br>from Different Species",
                    " Identification and characterisation of the<br>CD40-ligand of Sigmodon hispidus",
                    " The Genus Alnus, A Comprehensive Outline of Its<br>Chemical Constituents and Biological Activities",
                    " Expression and purification of coronavirus<br>envelope proteins using a modified β-barrel construct",
                    " Identification of Protein Receptors for<br>Coronaviruses by Mass Spectrometry",
                    " Cell‐Based Hepatitis C Virus Infection<br>Fluorescence Resonance Energy Transfer (FRET) Assay for<br>Antiviral Compound Screening",
                    " Plasmodium vivax Antigen Discovery Based on<br>Alpha-Helical Coiled Coil Protein Motif",
                    " PWP2, a member of the WD-repeat family of<br>proteins, is an essentialSaccharomyces cerevisiae gene<br>involved in cell separation",
                    " Immunogenicity of eGFP-Marked Recombinant<br>Lactobacillus casei against Transmissible Gastroenteritis<br>Virus and Porcine Epidemic Diarrhea Virus",
                    " Expression of Recombinant Antibodies",
                    " Porcine aminopeptidase N mediated polarized<br>infection by porcine epidemic diarrhea virus in target<br>cells",
                    " Influence of media composition on recombinant<br>monoclonal IgA1 glycosylation analysed by lectin-based<br>protein microarray and MALDI-MS",
                    " Proteomic analysis of Pteropus alecto kidney<br>cells in response to the viral mimic, Poly I:C",
                    " Development of a Coxsackievirus A16<br>neutralization assay based on pseudoviruses for measurement<br>of neutralizing antibody titer in human serum",
                    " Expression patterns in feline blood and<br>tissues of α(1)-acid glycoprotein (AGP) and of an<br>AGP-related protein (AGPrP)",
                    " Turkey Coronavirus Non-Structure Protein<br>NSP15-An Endoribonuclease",
                    " Repurposing of Miglustat to inhibit the<br>coronavirus Severe Acquired Respiratory Syndrome<br>SARS-CoV-2",
                    " TGEV infection up-regulates FcRn expression<br>via activation of NF-κB signaling",
                    " Metabolic engineering of Escherichia coli<br>into a versatile glycosylation platform:<br>production of bio-active quercetin glycosides",
                    " Molecular and functional insights into a novel<br>teleost malectin from big-belly seahorse Hippocampus<br>abdominalis",
                    " Organ distribution of severe acute<br>respiratory syndrome (SARS) associated coronavirus<br>(SARS‐CoV) in SARS patients: implications for<br>pathogenesis and virus transmission pathways",
                    " Highly Attenuated Vaccinia Virus Dis as a<br>Potential Sars Vaccine",
                    " Pseudotyped Vesicular Stomatitis Virus for<br>Analysis of Virus Entry Mediated by SARS Coronavirus<br>Spike Proteins",
                    " Anti-TGEV Miller Strain Infection Effect of<br>Lactobacillus plantarum Supernatant Based on the JAK-STAT1<br>Signaling Pathway",
                    " B Cell Repertoire Analysis Identifies New<br>Antigenic Domains on Glycoprotein B of Human<br>Cytomegalovirus which Are Target of Neutralizing Antibodies",
                    " The Human Cytomegalovirus DNA Polymerase<br>Processivity Factor UL44 Is Modified by SUMO in a<br>DNA-Dependent Manner",
                    " Antimicrobial and antioxidant activities of<br>Cortex Magnoliae Officinalis and some other<br>medicinal plants commonly used in South-East Asia",
                    " A Critical Domain of Ebolavirus Envelope<br>Glycoprotein Determines Glycoform and Infectivity",
                    " A Novel High-Throughput Vaccinia Virus<br>Neutralization Assay and Preexisting Immunity in Populations<br>from Different Geographic Regions in China",
                    " The Interferon-Inducible Mouse<br>Apolipoprotein L9 and Prohibitins Cooperate to Restrict<br>Theiler’s Virus Replication",
                    " Gene-silencing suppressors for high-level<br>production of the HIV-1 entry inhibitor griffithsin in<br>Nicotiana benthamiana",
                    " Proteomic analysis of purified Newcastle<br>disease virus particles",
                    " Respiratory Syncytial Virus and Other<br>Pediatric Respiratory Virus Infections",
                    " X-ray Structural and Biological Evaluation of<br>a Series of Potent and Highly Selective<br>Inhibitors of Human Coronavirus Papain-like Proteases",
                    " Topographical mapping of epitopes on the<br>glycoproteins of murine hepatitis virus-4 (strain JHM):<br>Correlation with biological activities",
                    " A recombinant single chain antibody<br>neutralizes coronavirus infectivity but only slightly<br>delays lethal infection of mice",
                    " A General Strategy to Endow Natural<br>Fusion-protein-Derived Peptides with Potent Antiviral Activity",
                    " A comparison of methods for purification and<br>concentration of norovirus GII-4 capsid virus-like<br>particles",
                    " Growth of a murine coronavirus in a<br>microcarrier cell culture system",
                    " Human Mig chemokine: biochemical and<br>functional characterization",
                    " Rapid isolation and profiling of a diverse<br>panel of human monoclonal antibodies targeting the<br>SARS-CoV-2 spike protein",
                    " Validation of γ-radiation and ultraviolet as a<br>new inactivators for foot and mouth disease virus<br>in comparison with the traditional methods",
                    " Antigenic Cross-Reactivity between Severe<br>Acute Respiratory Syndrome—Associated<br>Coronavirus and Human Coronaviruses 229E and OC43",
                    " Detection of feline coronavirus using<br>microcantilever sensors",
                    " The Secretome Profiling of a Pediatric Airway<br>Epithelium Infected with hRSV Identified Aberrant<br>Apical/Basolateral Trafficking and Novel Immune Modulating<br>(CXCL6, CXCL16, CSF3) and Antiviral (CEACAM1)<br>Proteins",
                    " Construction of a food-grade cell surface<br>display system for Lactobacillus casei",
                    " Cleavage and Serum Reactivity of the Severe<br>Acute Respiratory Syndrome Coronavirus Spike<br>Protein",
                    " The rubella virus E1 glycoprotein is arrested<br>in a novel post-ER, pre- Golgi compartment",
                    " Manipulation of the Coronavirus Genome Using<br>Targeted RNA Recombination with Interspecies Chimeric<br>Coronaviruses",
                    " Ebola virus (EBOV) infection: Therapeutic<br>strategies",
                    " Molecular and Functional Analysis of the Human<br>Prothrombinase Gene (HFGL2) and Its Role in Viral Hepatitis",
                    " Suppression of type I interferon production by<br>porcine epidemic diarrhea virus and degradation of<br>CREB-binding protein by nsp1",
                    " Relationship Between Aging and Renal<br>High-Affinity Sodium-Dependent Dicarboxylate<br>Cotransporter-3 Expression Characterized With Antifusion<br>Protein Antibody",
                    " Suppression of feline coronavirus<br>replication in vitro by cyclosporin A",
                    " Hemagglutination and structural<br>polypeptides of a new coronavirus associated with diarrhea<br>in infant mice",
                    " High-cell-density cultivations to increase<br>MVA virus production",
                    " Characterization of a nucleic acid probe for<br>the diagnosis of human coronavirus 229E<br>infections",
                    " The crucial role of bile acids in the entry of<br>porcine enteric calicivirus",
                    " Secretory Nanoparticles of Neospora caninum<br>Profilin-Fused with the Transmembrane Domain of GP64 from<br>Silkworm Hemolymph",
                    " Chloroquine, an Endocytosis Blocking Agent,<br>Inhibits Zika Virus Infection in Different Cell Models",
                    " Factors Affecting the Stability of<br>Transmissible Enteritis Virus of Turkeys",
                    " Production of Hen Egg Yolk Immunoglobulins<br>Simultaneously Directed Against Salmonella Enteritidis and<br>Salmonella Typhimurium in the Same Egg Yolk",
                    " A Single Residue Substitution in the<br>Receptor-Binding Domain of H5N1 Hemagglutinin Is Critical for<br>Packaging into Pseudotyped Lentiviral Particles",
                    " Epimedium koreanum Nakai Water Extract<br>Exhibits Antiviral Activity against Porcine Epidermic<br>Diarrhea Virus In Vitro and In Vivo",
                    " SUMO fusion system facilitates soluble<br>expression and high production of bioactive human<br>fibroblast growth factor 23 (FGF23)",
                    " Improved Pharmacological and Structural<br>Properties of HIV Fusion Inhibitor AP3 over Enfuvirtide:<br>Highlighting Advantages of Artificial Peptide Strategy",
                    " Potentiation of macrophage activity by thymol<br>through augmenting phagocytosis",
                    " Construction and characterization of porcine<br>single-chain fragment variable antibodies that neutralize<br>transmissible gastroenteritis virus in vitro",
                    " A novel reporter system for neutralizing and<br>enhancing antibody assay against dengue virus",
                    " Antiviral activity of Carbenoxolone disodium<br>against dengue virus infection",
                    " Dissecting human antibody responses: useful,<br>basic and surprising findings",
                    " Neutralizing Antibody to Calf Diarrhea<br>Coronavirus in Various Animal Species in Japan",
                    " Metalloprotease ADAM17 regulates porcine<br>epidemic diarrhea virus infection by modifying<br>aminopeptidase N",
                    " Conflicts with diarrheal pathogens trigger<br>rapid evolution of an intestinal signaling axis",
                    " Purification of cell culture‐derived human<br>influenza A virus by size‐exclusion and anion‐exchange<br>chromatography",
                    " Identification of Linear B-Cell Epitopes on<br>Hemagglutinin Protein of Canine Distemper Virus Using Two<br>Monoclonal Antibodies",
                    " GPI‐anchored aminopeptidase is involved in<br>the acrosome reaction in sperm of the mussel<br>mytilus edulis"
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                    " Respiratory syncytial virus evaluation among<br>asymptomatic and symptomatic subjects in a university<br>hospital in Sao Paulo, Brazil, in the period of 2009‐2013",
                    " Complement Fixing Antibodies to Respiratory<br>Viruses in Children in Jos, Nigeria",
                    " The human viral challenge model: accelerating<br>the evaluation of respiratory antivirals,<br>vaccines and novel diagnostics",
                    " Pneumonia and pericarditis in a child with<br>HRV-C infection: A case report",
                    " Clinical and Molecular Epidemiology of Human<br>Bocavirus in Respiratory and Fecal Samples from Children<br>in Hong Kong",
                    " A Two-Year Study of Bacterial, Viral, and<br>Parasitic Agents Associated with Diarrhea in Rural<br>Bangladesh",
                    " Asthma and COPD",
                    " Co-infection with respiratory pathogens<br>among COVID-2019 cases",
                    " Association of visitation policy and health<br>care-acquired respiratory viral infections in hospitalized<br>children",
                    " The changes of prevalence and etiology of<br>pediatric pneumonia from National Emergency Department<br>Information System in Korea, between 2007 and 2014",
                    " Human metapneumovirus in paediatric<br>intensive care unit (PICU) admissions in the United<br>Kingdom (UK) 2006–2014",
                    " Analysis of genetic variability of<br>respiratory syncytial virus groups A and B in Kuwait",
                    " Pathologic Findings in Novel Influenza A<br>(H1N1) Virus (“Swine Flu”) Infection: Contrasting<br>Clinical Manifestations and Lung Pathology in Two Fatal<br>Cases",
                    " Prevention of influenza among travellers<br>attending at a UK travel clinic: beliefs and perceptions.<br>A cross‐sectional study",
                    " Survey of influenza and other respiratory<br>viruses diagnostic testing in US hospitals, 2012–2013",
                    " Influenza and Endemic Viral Pneumonia",
                    " Prematurity, a significant predictor for<br>worse outcome in viral bronchiolitis: a comparative<br>study in infancy",
                    " Surveillance of influenza in Apulia, Italy,<br>1999–2000, 2000–2001, 2001–2002, and 2002–2003 seasons",
                    " The emerging influenza virus threat: status<br>and new prospects for its therapy and control",
                    " The effect of timing on community acquired<br>respiratory virus infection mortality during the first<br>year after allogeneic hematopoietic stem cell<br>transplantation: a prospective epidemiological survey",
                    " The case for ILI surveillance",
                    " Epidemiological and clinical features of<br>human coronavirus infections among different<br>subsets of patients",
                    " Cord blood hemopoietic progenitor profiles<br>predict acute respiratory symptoms in infancy",
                    " Diagnosis of Allergy and Asthma in Childhood",
                    " Preventing airborne infection with an<br>intranasal cellulose powder formulation (Nasaleze<br>Travel®)",
                    " Microbiologic Methods in the Diagnostics of<br>Upper Respiratory Tract Pathogens",
                    " Immunogenicity of Inactivated Influenza<br>Vaccine in Residential Homes for Elderly People",
                    " Lactose malabsorption in Central Australian<br>Aboriginal children hospitalized with acute enteritis",
                    " Human Bocavirus in French Children",
                    " CHILDHOOD ASTHMA IN BRISBANE:<br>EPIDEMIOLOGICAL OBSERVATIONS",
                    " Clinical characteristics of COVID-19 in<br>children compared with adults in Shandong Province,<br>China",
                    " Respiratory viral infection in lower airways<br>of asymptomatic children",
                    " Is Fever a Red Flag for Bacterial Pneumonia in<br>Children With Viral Bronchiolitis?",
                    " Cetylpyridinium Chloride (CPC) Exhibits<br>Potent, Rapid Activity Against Influenza Viruses in<br>vitro and in vivo",
                    " Viral Diversity in Asthma",
                    " Respiratory Virus Detection and Clinical<br>Diagnosis in Children Attending Day Care",
                    " Obesity and risk of respiratory tract<br>infections: results of an infection-diary based cohort<br>study",
                    " Respiratory Syncytial Virus Infection in<br>Elderly Adults",
                    " Acute and Chronic Otitis Media",
                    " VIRAL ETIOLOGY AND OUTCOME OF SEVERE LOWER<br>RESPIRATORY TRACT INFECTIONS AMONG CRITICALLY ILL<br>CHILDREN ADMITTED TO THE PICU",
                    " Establishment and Clinical Applications of a<br>Portable System for Capturing Influenza Viruses<br>Released through Coughing",
                    " Diversity of upper respiratory tract<br>infections and prevalence of Streptococcus pneumoniae<br>colonization among patients with fever and flu-like<br>symptoms",
                    " Clinical features of Chlamydia pneumoniae<br>acute respiratory infection",
                    " Antiviral IFN-γ responses of monocytes at<br>birth predict respiratory tract illness in the first<br>year of life",
                    " Burden, Etiology, and Risk Factors of<br>Respiratory Virus Infections Among Symptomatic Preterm<br>Infants in the Tropics: A Retrospective Single-Center<br>Cohort Study",
                    " Human Metapneumovirus–Associated Lower<br>Respiratory Tract Infections among Hospitalized Human<br>Immunodeficiency Virus Type 1 (HIV-1)–Infected and<br>HIV-1–Uninfected African Infants",
                    " Viral respiratory infections in elderly<br>patients and patients with chronic obstructive<br>pulmonary disease",
                    " Household transmission of respiratory<br>viruses – assessment of viral, individual and<br>household characteristics in a population study of<br>healthy Australian adults",
                    " Severity of Respiratory Syncytial Virus Lower<br>Respiratory Tract Infection With Viral Coinfection in<br>HIV-Uninfected Children",
                    " Why diagnose respiratory viral infection?",
                    " Authors' Reply",
                    " Diagnosis of human coronavirus infection by<br>immunofluorescence: Method and application to respiratory disease<br>in hospitalized children",
                    " Estimates and determinants of economic<br>impacts from influenza‐like illnesses caused by<br>respiratory viruses in Australian children attending<br>childcare: a cohort study",
                    " β(2)-Adrenergic receptor promoter haplotype<br>influences the severity of acute viral respiratory tract<br>infection during infancy: a prospective cohort study",
                    " Respiratory failure presenting in H1N1<br>influenza with Legionnaires disease: two case reports",
                    " Is virus coinfection a predictor of severity in<br>children with viral respiratory infections?",
                    " Effects of Hand Hygiene Campaigns on Incidence<br>of Laboratory-confirmed Influenza and<br>Absenteeism in Schoolchildren, Cairo, Egypt",
                    " Evidence of nosocomial transmission of human<br>rhinovirus in a neonatal intensive care unit",
                    " Rotavirus infection in adults",
                    " Evaluation of a Live Attenuated Human<br>Metapneumovirus Vaccine in Adults and Children",
                    " Microbiology of otitis media: A moving target",
                    " Comparison of two broadly multiplexed PCR<br>systems for viral detection in clinical respiratory<br>tract specimens from immunocompromised children",
                    " Seroepidemiological analysis of influenza<br>pandemics in Shizuoka Prefecture and all Japan",
                    " Nasal cytokines as mediators of illness during<br>the common cold",
                    " Antibiotic use for community-acquired<br>pneumonia in neonates and children: WHO evidence review",
                    " Medical reviews. Coronaviruses.",
                    " Influenza and Influenza-like Viruses in<br>Children in the Epidemic Season 2015/2016 in Poland",
                    " Diagnostic performance of influenza viruses<br>and RSV rapid antigen detection tests in children<br>in tertiary care",
                    " Replacing nebulizers by MDI-spacers for<br>bronchodilator and inhaled corticosteroid administration:<br>Impact on the utilization of hospital resources",
                    " Clinical implications of rapid ePlex®<br>Respiratory Pathogen Panel testing compared to<br>laboratory-developed real-time PCR",
                    " The paradox of COVID-19 and pediatric<br>anesthesiology: opinion of the Pediatric Anesthesia Committee<br>of the Brazilian Society of Anesthesiology",
                    " Viral-Bacterial Interactions in Childhood<br>Respiratory Tract Infections",
                    " Psychosocial factors, respiratory viruses<br>and exacerbation of asthma",
                    " Risk factors for bronchiolitis severity: A<br>retrospective review of patients admitted to the university<br>hospital from central region of Slovenia",
                    " Lessons learned from a double-blind<br>randomised placebo-controlled study with a<br>iota-carrageenan nasal spray as medical device in children with<br>acute symptoms of common cold",
                    " Viral bronchiolitis",
                    " The impact of bacterial and viral co‐infection<br>in severe influenza",
                    " Coronaviruses in Children, Greece",
                    " Mycoplasma pneumoniae detection in children<br>with respiratory tract infections and influence on<br>management – a retrospective cohort study in Switzerland",
                    " Human Coronaviruses and Other Respiratory<br>Viruses: Underestimated Opportunistic Pathogens of<br>the Central Nervous System?",
                    " “Epidemiology and aetiology of<br>influenza-like illness among households in metropolitan<br>Vientiane, Lao PDR”: A prospective, community-based<br>cohort study",
                    " The occurrence of polyomaviruses WUPyV and<br>KIPyV among patients with severe respiratory<br>infections",
                    " The Clinical Definitions of Asthma",
                    " Clinical considerations in the diagnosis of<br>viral respiratory infections",
                    " Effects of echinacea on the frequency of upper<br>respiratory tract symptoms: a randomized, double-blind,<br>placebo-controlled trial",
                    " Detection of viral acute lower respiratory<br>tract infection in hospitalized infants using<br>real-time PCR",
                    " Is there a clinical difference between<br>influenza A and B virus infections in hospitalized<br>patients?: Results after routine polymerase chain<br>reaction point-of-care testing in the emergency room<br>from 2017/2018",
                    " Laryngitis, Tracheitis, Epiglottitis, and<br>Bronchiolitis: Sore Throat, Change in Voice, Feverora<br>Wheezing Infant in Respiratory Distress",
                    " Influenza",
                    " Respiratory Viruses and Torque Teno Virus in<br>Adults with Acute Respiratory Infections",
                    " Fever in Common Infectious Diseases",
                    " Rhinoviruses",
                    " Regional Diversification of Influenza<br>Activity in Poland During the 2015/16 Epidemic Season",
                    " Partial comparison of the NxTAG Respiratory<br>Pathogen Panel Assay with the Luminex xTAG Respiratory<br>Panel Fast Assay V2 and singleplex real-time<br>polymerase chain reaction for detection of respiratory<br>pathogens",
                    " Determining the Provincial and National<br>Burden of Influenza-Associated Severe Acute<br>Respiratory Illness in South Africa Using a Rapid<br>Assessment Methodology",
                    " Identfication of viral and bacterial<br>etiologic agents of the pertussis-like syndrome in<br>children under 5 years old hospitalized"
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                  "text": [
                    " Bat and virus",
                    " Identification of novel and diverse<br>rotaviruses in rodents and insectivores, and evidence of<br>cross-species transmission into humans",
                    " Coronavirus MHV-A59 infects the lung and<br>causes severe pneumonia in C57BL/6 mice",
                    " Host Factors in Coronavirus Replication",
                    " Land degradation of abandoned croplands in the<br>Xilingol steppe region, Inner Mongolia, China",
                    " Metagenomic analysis of a sample from a patient<br>with respiratory tract infection reveals the<br>presence of a γ-papillomavirus",
                    " Practical application of bioinformatics by<br>the multidisciplinary VIZIER consortium",
                    " West Nile virus impacts in American crow<br>populations are associated with human land use and climate",
                    " Biophysical Analyses for Probing<br>Glycan-Protein Interactions",
                    " Genetic variability of human metapneumovirus<br>amongst an all ages population in Cambodia between 2007<br>and 2009",
                    " Emerging Infectious Diseases in Camelids",
                    " Transport impacts on atmosphere and climate:<br>Aviation",
                    " Novel hantavirus identified in black-bearded<br>tomb bats, China",
                    " The relevance of complement to virus biology",
                    " Diagnostic electron microscopy is still a<br>timely and rewarding method",
                    " Plague as a Biological Weapon",
                    " Responses of Tropical Bats to Habitat<br>Fragmentation, Logging, and Deforestation",
                    " Risk and Response to Biological Catastrophe in<br>Lower Income Countries",
                    " Functional Involvement of<br>Interferon-Inducible Transmembrane Proteins in Antiviral Immunity",
                    " An overview of the highly pathogenic H5N1<br>influenza virus",
                    " Cell adhesion as a novel approach to<br>determining the cellular binding motif on the severe acute<br>respiratory syndrome coronavirus spike protein",
                    " The Role of the Renin-Angiotensin System in<br>Hepatic Fibrosis",
                    " Chapter 4 Structure, Organization, and<br>Development of the Mucosal Immune System of the Respiratory<br>Tract",
                    " Porcine epidemic diarrhea virus: An overview<br>of current virological and serological<br>diagnostic methods",
                    " Distribution of Trichoptera communities in<br>the Hozgargantacatchment (Los Alcornocales<br>Natural Park, SW Spain)",
                    " Central Nervous System: Viral Infection and<br>Immune-Mediated Inflammation",
                    " Replication of murine coronavirus requires<br>multiple cysteines in the endodomain of spike protein",
                    " Three-Dimensional Architecture and<br>Biogenesis of Membrane Structures Associated with Plant<br>Virus Replication",
                    " Applications of RNA interference: current<br>state and prospects for siRNA-based strategies in<br>vivo",
                    " Retinal pathology in multiple sclerosis:<br>insight into the mechanisms of neuronal pathology",
                    " Biogenesis and architecture of arterivirus<br>replication organelles",
                    " Ferret models of viral pathogenesis",
                    " Assessing allergenic fungi in house dust by<br>floor wipe sampling and quantitative PCR",
                    " LightUp® probes in clinical diagnostics",
                    " Sequence and analysis of BECV F15 matrix<br>protein",
                    " The ER in Replication of Positive-Strand RNA<br>Viruses",
                    " Trends in global warming and evolution of<br>matrix protein 2 family from influenza A virus",
                    " Safety and immunogenicity of mammalian cell<br>derived and Modified Vaccinia Ankara vectored African<br>swine fever subunit antigens in swine",
                    " Infection, immunity and the neuroendocrine<br>response",
                    " Induction and control of the type I interferon<br>pathway by Bluetongue virus",
                    " Establishment of different plasmid<br>only-based reverse genetics systems for the recovery of<br>African horse sickness virus",
                    " Benefits and drawbacks of molecular<br>techniques for diagnosis of viral respiratory<br>infections. Experience with two multiplex PCR assays",
                    " Hydrocephalus in Animals",
                    " Metagenomics reshapes the concepts of RNA<br>virus evolution by revealing extensive horizontal<br>virus transfer",
                    " Challenges in modelling complexity of fungal<br>entomopathogens in semi-natural populations of insects",
                    " Antiviral activity of a Bacillus sp. P34<br>peptide against pathogenic viruses of domestic<br>animals",
                    " Respiratory Virus Infections in<br>Hematopoietic Cell Transplant Recipients",
                    " Evolutionary Analysis of the VP1 and<br>RNA-Dependent RNA Polymerase Regions of Human Norovirus<br>GII.P17-GII.17 in 2013–2017",
                    " Regulation of the apoptosis-inducing kinase<br>DRAK2 by cyclooxygenase-2 in colorectal cancer",
                    " Rodent and Germplasm Trafficking: Risks of<br>Microbial Contamination in a High-Tech Biomedical World",
                    " Chikungunya disease and chloroquine<br>treatment",
                    " Evaluation of indirect immunofluorescence<br>antibody test and enzyme-linked immunosorbent assay<br>for the diagnosis of infection by Leishmania<br>infantum in clinically normal and sick cats",
                    " SARS-Coronavirus ancestor’s foot-prints in<br>South-East Asian bat colonies and the refuge theory",
                    " Biogeography of diseases: a framework for<br>analysis",
                    " Dynamics of pulmonary endothelial barrier<br>function in acute inflammation: mechanisms and<br>therapeutic perspectives",
                    " Pathogenesis of Murine Coronavirus in the<br>Central Nervous System",
                    " Chapter 5 Future prospects",
                    " Detecting signals of chronic shedding to<br>explain pathogen persistence: Leptospira<br>interrogans in California sea lions",
                    " Molecular epidemiology and characterization<br>of human coronavirus in Thailand, 2012–2013",
                    " Detection and genotyping of Korean porcine<br>rotaviruses",
                    " Metabolism of Glutathione S-Conjugates:<br>Multiple Pathways",
                    " Activation of c-Jun N-terminal kinase by<br>Akabane virus is required for apoptosis",
                    " Detection and molecular characterization of<br>porcine group C rotaviruses in South Korea",
                    " Economic Importance",
                    " Bats, Civets and the Emergence of SARS",
                    " Heteroaggregation of an enveloped<br>bacteriophage with colloidal sediments and effect on virus<br>viability",
                    " First report and phylogenetic analysis of<br>porcine deltacoronavirus in Mexico",
                    " Chapter Four Lipid Nanoparticles for Short<br>Interfering RNA Delivery",
                    " Prophylactic and therapeutic intranasal<br>administration with an immunomodulator, Hiltonol® (Poly<br>IC:LC), in a lethal SARS-CoV-infected BALB/c mouse<br>model",
                    " The multifaceted role of astrocytes in<br>regulating myelination",
                    " Novel Therapeutics Against West Nile Virus",
                    " Epidemiology of Parkinson's disease",
                    " Porcine deltacoronavirus nsp5 inhibits<br>interferon-β production through the cleavage of NEMO",
                    " Chapter 7 Herbal extracts as antiviral agents",
                    " A scoping review of Chikungunya virus<br>infection: epidemiology, clinical characteristics,<br>viral co-circulation complications, and control",
                    " Antiviral effects of Lactobacillus ruminis<br>SPM0211 and Bifidobacterium longum SPM1205 and<br>SPM1206 on rotavirus-infected Caco-2 cells and a<br>neonatal mouse model",
                    " Inhibition of enterovirus 71 infection by<br>antisense octaguanidinium dendrimer-conjugated<br>morpholino oligomers",
                    " ARF-Like (ARL) Proteins",
                    " Susceptibility of the Lesser Mealworm,<br>Alphitobius diaperinus (Coleoptera: Tenebrionidae),<br>From Broiler Farms of Southern Brazil to<br>Insecticides",
                    " Microfluidic-based biosensors toward<br>point-of-care detection of nucleic acids and proteins",
                    " Targeting Viral Heart Disease by RNA<br>Interference",
                    " Simultaneous detection of respiratory<br>viruses in children with acute respiratory infection<br>using two different multiplex reverse<br>transcription-PCR assays",
                    " Ebola Virus Disease in Humans:<br>Pathophysiology and Immunity",
                    " The scientific basis for currently proposed<br>management options for Hector’s and Maui dolphins: a<br>critique",
                    " Molecular characterization of<br>Cryptosporidium isolates from diarrheal dairy calves in France",
                    " Age-associated T-cell Clonal Expansions<br>(TCE) in vivo—Implications for Pathogen Resistance",
                    " Latent infection of human bocavirus<br>accompanied by flare of chronic cough, fatigue and episodes<br>of viral replication in an immunocompetent adult<br>patient, Cologne, Germany",
                    " A view from the common cold unit",
                    " Electrochemical nucleic acid detection based<br>on parallel structural dsDNA/recombinant<br>azurin hybrid",
                    " Use of Transgenic Animals to Improve Human<br>Health and Animal Production",
                    " Chapter Four Parasites in Food: From a<br>Neglected Position to an Emerging Issue",
                    " Chapter One Supramolecular Architecture of<br>the Coronavirus Particle",
                    " Discovery, diversity and evolution of novel<br>coronaviruses sampled from rodents in China",
                    " Chapter 33 Molecular Mechanisms and<br>Consequences of Immune and Nervous System Interactions",
                    " Neurophysiological Correlates of the<br>Dunning-Kruger Effect",
                    " Recent advances in the identification of the<br>host factors involved in dengue virus replication",
                    " Remyelination In Multiple Sclerosis",
                    " Simian varicella virus causes robust<br>transcriptional changes in T cells that support viral<br>replication",
                    " Immune pathways and defence mechanisms in<br>honey bees Apis mellifera",
                    " Amino acid substitutions within the heptad<br>repeat domain 1 of murine coronavirus spike protein<br>restrict viral antigen spread in the central nervous<br>system",
                    " Immunosenescence Modulation by Vaccination",
                    " Europe, the bull and the Minotaur: the<br>biological legacy of a Neolithic love story",
                    " The effect of emodin, an anthraquinone<br>derivative extracted from the roots of Rheum tanguticum,<br>against herpes simplex virus in vitro and in vivo",
                    " The loss of aquatic and riparian plant<br>communities: Implications for their consumers in a riverine<br>food web",
                    " Chapter 16 RNA Viruses in Parasitoid Wasps",
                    " Advances in the diagnosis of key<br>gastrointestinal nematode infections of livestock, with an<br>emphasis on small ruminants",
                    " The complement system",
                    " HTLV-3/4 and simian foamy retroviruses in<br>humans: Discovery, epidemiology, cross-species<br>transmission and molecular virology",
                    " Role of the golgi apparatus in cellular<br>pathology",
                    " Dogs immunized with LBSap vaccine displayed<br>high levels of IL-12 and IL-10 cytokines and CCL4,<br>CCL5 and CXCL8 chemokines in the dermis",
                    " Ocular Mucosal Immunity",
                    " VCP/p97 Is a Proviral Host Factor for<br>Replication of Chikungunya Virus and Other Alphaviruses",
                    " An overview of COVID-19",
                    " Etiopathogenesis and Pathophysiology of<br>Malaria",
                    " Codon adaptation biases among sylvatic and<br>urban genotypes of Dengue virus type 2",
                    " Lawsonia intracellularis infection and<br>proliferative enteropathy in foals",
                    " Chapter 23 Enzymatic Production of Steviol<br>Glucosides Using β-Glucosidase and Their Applications",
                    " Respiratory virus panels for global<br>surveillance of emerging infectious diseases",
                    " Biological Properties, Current Applications<br>and Potential Therapeautic Applications of<br>Brevinin Peptide Superfamily",
                    " Recent advances in pharmacological research<br>on Ecklonia species: a review",
                    " Sphenisciformes, Gaviiformes,<br>Podicipediformes, Procellariiformes, and Pelecaniformes"
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                    " Evidence-Based Medicine in China",
                    " Intensive Care Unit Preparedness During<br>Pandemics and Other Biological Threats",
                    " Willingness to accept a future influenza<br>A(H7N9) vaccine in Beijing, China",
                    " Reply to letter to the editor ‘Lessons from<br>COVID-19 to Future Evidence Synthesis Efforts: First<br>Living Search Strategy and Out of Date Scientific<br>Publishing and Indexing Industry",
                    " Civil Society Involvement in National<br>HIV/AIDS Programs",
                    " Trends in Notifiable Infectious Diseases in<br>China: Implications for Surveillance and Population<br>Health Policy",
                    " Nosocomial Tuberculosis in India",
                    " Contact among healthcare workers in the<br>hospital setting: developing the evidence base for<br>innovative approaches to infection control",
                    " Examining the inclusion of patients and their<br>family members in infection prevention and control<br>policies and guidelines across Bangladesh, Indonesia,<br>and South Korea",
                    " “Impact of the COVID-19 pandemic on<br>Gastroenterology Divisions in Italy: a national survey”",
                    " The disguised pandemic: The importance of data<br>normalization in COVID-19 web mapping",
                    " Chapter 1 Protein-Rich By-Products:<br>Production Statistics, Legislative Restrictions, and<br>Management Options",
                    " Anti-Asian sentiment in the United States –<br>COVID-19 and history",
                    " New challenges in the COVID-19 pandemic",
                    " Impact of the COVID-19 Pandemic on Mental<br>Health and Quality of Life among Local Residents in<br>Liaoning Province, China: A Cross-Sectional Study",
                    " What Happened to the Foundations of Eurasian<br>Health Governance? Research Initiatives for Health<br>Security Capacity Building",
                    " Response to “The imaginary ‘Asian Super<br>Consumer’: A critique of demand reduction campaigns for<br>the illegal wildlife trade”",
                    " Rapid diagnostics urgently needed for killer<br>infections",
                    " The CoRisk-Index: A data-mining approach to<br>identify industry-specific risk assessments related<br>to COVID-19 in real-time",
                    " Protecting health workers from infectious<br>disease transmission: an exploration of a<br>Canadian-South African partnership of partnerships",
                    " Integrated Disease Surveillance and Response<br>(IDSR) in Malawi: Implementation gaps and challenges<br>for timely alert",
                    " Biosecurity Programs and Assets",
                    " SARS: health care work can be hazardous to<br>health",
                    " Vaccinology in the twenty-first century",
                    " The fiscal value of human lives lost from<br>coronavirus disease (COVID-19) in China",
                    " Investing in Public Health Microbiology<br>Laboratories in Western Balkan Countries Enhances Health<br>Security From Communicable Disease Threats in Europe",
                    " The New International Health Regulations and<br>the Federalism Dilemma",
                    " Tuberculosis care for pregnant women: a<br>systematic review",
                    " Qatar ECMO program: Past, present, and future",
                    " Post-traumatic Stress Disorder Among Health<br>Care Providers Two Years Following the Israeli<br>Attacks Against Gaza Strip in August 2014: Another Call<br>for Policy Intervention",
                    " The knowledge level and precautionary<br>measures taken by older adults during the SARS outbreak<br>in Hong Kong",
                    " A quasi-experiment on using guided mobile<br>learning interventions in ESL classrooms: Time use and<br>academic performance",
                    " Variant Creutzfeldt–Jakob disease and the<br>Canadian blood system after the tainted blood tragedy",
                    " Schmallenberg virus: Responding to the<br>challenge",
                    " The impact of non-pharmaceutical<br>interventions for 2009 H1N1 influenza on travel intentions: A<br>model of goal-directed behavior",
                    " The economic impact of the Coronavirus 2019<br>(Covid-2019): Implications for the mining industry",
                    " On pandemics and the duty to care: whose duty?<br>who cares?",
                    " Designing Medical Facilities to Care for<br>Patients with Highly Hazardous Communicable Diseases",
                    " Studying Vulnerable Populations in the<br>Context of Enhanced Vulnerability",
                    " The One Health path to infectious disease<br>prevention and resilience",
                    " Dental autopsy recommendations in SARS-CoV-2<br>infected cases",
                    " Risk factors for chronic post-traumatic<br>stress disorder (PTSD) in SARS survivors",
                    " Post COVID-19: Planning strategies to resume<br>orthopaedic surgery –challenges and considerations",
                    " Availability, consistency and evidence-base<br>of policies and guidelines on the use of mask and<br>respirator to protect hospital health care workers: a<br>global analysis",
                    " Pandemics: avoiding the mistakes of 1918",
                    " Travelling Companions: Emerging Diseases of<br>People, Animals and Plants Along the<br>Malawi-Mozambique Border",
                    " Mitigating the effect of the COVID-19 pandemic<br>on sickle cell disease services in African<br>countries",
                    " The role of an Orthopaedic Surgeon in the time of<br>Covid-19 Pandemic–a German perspective",
                    " On Health and Water Security",
                    " Recommendation to Optimize Safety of Elective<br>Surgical Care While Limiting the Spread of COVID-19:<br>Primum Non Nocere",
                    " Measuring compliance with<br>transmission-based isolation precautions: Comparison of<br>paper-based and electronic data collection",
                    " Steps to a Sustainable Public Health<br>Surveillance Enterprise A Commentary from the<br>International Society for Disease Surveillance",
                    " Hand hygiene and the novel coronavirus<br>pandemic: The role of healthcare workers",
                    " Responding to Healthcare Disparities and<br>Challenges With Access to Care During COVID-19",
                    " The increase in total knee replacement surgery<br>in Taiwan: A 15-year retrospective study",
                    " Emerging Infectious Diseases in 2012: 20 Years<br>after the Institute of Medicine Report",
                    " Emerging viral diseases and infectious<br>disease risks",
                    " Communication of bed allocation decisions in a<br>critical care unit and accountability for<br>reasonableness",
                    " Epidemiology of Travel-associated Pandemic<br>(H1N1) 2009 Infection in 116 Patients, Singapore",
                    " One Health Approach in the South East Asia<br>Region: Opportunities and Challenges",
                    " Global Trends in Epidemiology of Coronavirus<br>Disease 2019 (COVID-19)",
                    " Suicidal behaviour and suicide prevention in<br>later life",
                    " An investigation of district spatial<br>variations of childhood diarrhoea and fever morbidity in<br>Malawi",
                    " The US Military Commitment to Vaccine<br>Development: A Century of Successes and Challenges",
                    " Anxiety among university students during the<br>SARS epidemic in Hong Kong",
                    " Controlling Middle East Respiratory<br>Syndrome: Lessons Learned From Severe Acute Respiratory<br>Syndrome",
                    " Pandethics",
                    " Update: Severe Respiratory Illness<br>Associated With a Novel Coronavirus—Worldwide,<br>2012–2013",
                    " Natural Disasters",
                    " Survey of ophthalmology practitioners in A&E<br>on current COVID-19 guidance at three Major UK Eye<br>Hospitals",
                    " Midwives in a pandemic: A call for solidarity<br>and compassion",
                    " Enhancing preparedness for tackling new<br>epidemic threats",
                    " Errors, Uncertainty, and Ethical Issues",
                    " Public health and medical care for the world's<br>factory: China's Pearl River Delta Region",
                    " Crisis communication in context: Cultural and<br>political influences underpinning Chinese public<br>relations practice",
                    " Management-supportive measures for managers<br>of healthcare organizations during the COVID-19<br>epidemic",
                    " The Emerging Pandemic of Coronavirus: The<br>Urgent Need for Public Health Leadership",
                    " AVEPA Valencia 1991",
                    " The potential impact of the Covid-19 pandemic<br>on occupational status, work from home, and<br>occupational mobility",
                    " An Ontology for Collaborative Decision Making",
                    " Triage",
                    " Ebola virus is unlikely to become endemic in<br>West Africa",
                    " Do or die—Strategic decision-making<br>following a shock event",
                    " Survey on the Likely Behavioural Changes of the<br>General Public in Four European Countries During the<br>2009/2010 Pandemic",
                    " Population age structure only partially<br>explains the large number of COVID-19 deaths at the<br>oldest ages",
                    " Spread of Novel Coronavirus by Returning<br>Pilgrims from Iran to Pakistan",
                    " Geriatric Medicine in Italy in the Time of<br>Covid-19",
                    " Pandemics and Their Impact on Medical<br>Training: Lessons From Singapore",
                    " Data Protection and Research: A vital<br>challenge in the era of Covid-19 Pandemic",
                    " Emerging Diseases: A Global and Biological<br>Perspective",
                    " Impact of Ebola experiences and risk<br>perceptions on mental health in Sierra Leone, July 2015",
                    " Paediatric pandemic planning: children’s<br>perspectives and recommendations",
                    " A One Health Approach to Wildlife and Food<br>Safety",
                    " Becoming bovine: Mechanics and metamorphosis<br>in Hokkaido's animal-human-machine",
                    " Public perceptions of non-pharmaceutical<br>interventions for reducing transmission of respiratory<br>infection: systematic review and synthesis of<br>qualitative studies",
                    " Mental Health Services in Lombardy during<br>COVID-19 outbreak",
                    " Vagueness and Costs of the Pause on<br>Gain-of-Function (GOF) Experiments on Pathogens with Pandemic<br>Potential, Including Influenza Virus",
                    " Travel Medicine Online International sources<br>of travel medicine information on the Internet",
                    " The accuracy of nurses' estimates of their<br>absenteeism",
                    " Clinical Issues—January 2012",
                    " Legal and Moral Reflections on Modern<br>Biotechnology in Use & Misuse",
                    " SARS Risk Perceptions in Healthcare Workers,<br>Japan",
                    " The effectiveness of non-pharmaceutical<br>interventions in containing epidemics: a rapid review of the<br>literature and quantitative assessment",
                    " New ethnicities online: reflexive<br>racialisation and the internet",
                    " Preventing the next 'SARS' - European<br>healthcare workers' attitudes towards monitoring their<br>health for the surveillance of newly emerging<br>infections: qualitative study",
                    " Community Under Stress: Trust, Reciprocity,<br>and Community Collective Efficacy During SARS<br>Outbreak",
                    " Improving emergency preparedness capability<br>of rural public health personnel in China",
                    " The Influence of COVID-19 on Air Quality in<br>India: A Boon or Inutile",
                    " Protecting health care workers from SARS and<br>other respiratory pathogens: Organizational and<br>individual factors that affect adherence to infection<br>control guidelines",
                    " The Vascular Surgery Covid-19 Collaborative<br>(VASCC)",
                    " An unexpected and suspended time",
                    " Effect of proactive infection control<br>measures on benchmarked rate of hospital outbreaks: An<br>analysis of public hospitals in Hong Kong over 5 years",
                    " Risk analysis for plant-made vaccines",
                    " Forecasting respiratory infectious<br>outbreaks using ED-based syndromic surveillance for<br>febrile ED visits in a Metropolitan City",
                    " Health care and mental health challenges for<br>transgender individuals during the COVID-19 pandemic",
                    " Prenatal Care Redesign: Creating Flexible<br>Maternity Care Models Through Virtual Care",
                    " The “City Operator” and the Tianyi Square<br>Redevelopment Project",
                    " Bereavement support on the frontline of<br>COVID-19: Recommendations for hospital clinicians",
                    " COVID-19 in forensic medicine unit personnel:<br>Observation from Thailand",
                    " Neurosurgical training during the COVID-19<br>pandemic: a British perspective",
                    " International Conferences on Environmental<br>Mutagens in Human Populations—Opportunities,<br>Accomplishments and Challenges",
                    " Gay Saunas and the Risks of HIV and Syphilis<br>Transmissions in China—Results of a Meta‐Analysis",
                    " Anti-infective monoclonal antibodies:<br>perils and promise of development",
                    " Placing Resources: Junior Mining Companies<br>and the Locus of Mineral Potential",
                    " Managing public health crises: the role of<br>models in pandemic preparedness",
                    " Communciation channels to help build an<br>international community of education and practice",
                    " Is the Mortality Trend of Ischemic Heart<br>Disease by the GBD2013 Study in China Real?",
                    " COVID-19 and the Advancement of Digital<br>Physical Therapist Practice and Telehealth",
                    " Responding to priority health challenges in<br>the Arab world",
                    " Feeling Like It is Time to Reopen Now? COVID-19<br>New Normal Scenarios based on Reopening Sentiment<br>Analytics",
                    " Severe Acute Respiratory Syndrome and Sport:<br>Facts and Fallacies",
                    " Measuring psychological resilience to<br>disasters: are evidence-based indicators an achievable<br>goal?",
                    " 2018 international meeting of the Global Virus<br>Network",
                    " Toward sustainable and effective control:<br>Experience of China Ebola Treatment Center in Liberia",
                    " Quiet Moment around the Campfire",
                    " Conclusion",
                    " A systematic review of community-based<br>interventions for emerging zoonotic infectious diseases in<br>Southeast Asia",
                    " Daily Travel and Wellbeing among the Elderly",
                    " The evolution of disease: anthropological<br>perspectives on epidemiologic transitions",
                    " Practical insights for paediatric<br>otolaryngology surgical cases and performing<br>microlaryngobronchoscopy during the COVID-19 pandemic",
                    " Opinion piece: Microneurosurgery in COVID-19<br>positive patients",
                    " A planetary vision for one health",
                    " Tackling COVID-19: Can the African continent<br>play the long game?",
                    " Consultation-Liaison Psychiatry in the Age of<br>COVID-19: Reaffirming Ourselves and Our Worth",
                    " China's capacity of hospitals to deal with<br>infectious diseases in the context of climate change",
                    " Working experiences of nurses during the<br>Middle East respiratory syndrome outbreak",
                    " The Role of Internists During Epidemics,<br>Outbreaks, and Bioterrorist Attacks",
                    " Old Threat, New Enemy: Is Your Interventional<br>Radiology Service Ready for the Coronavirus Disease<br>2019?",
                    " Control of Infectious Diseases in the Era of<br>European Clinical Microbiology Laboratory<br>Consolidation: New Challenges and Opportunities for the<br>Patient and for Public Health Surveillance",
                    " Medical Ethics: Serious Reportable<br>Communicable Diseases",
                    " Climate change and infectious disease: time<br>for a new normal?",
                    " A Review of Laboratory-Acquired Infections in<br>the Asia-Pacific: Understanding Risk and the Need<br>for Improved Biosafety for Veterinary and<br>Zoonotic Diseases",
                    " Enhancing legal preparedness for the<br>prevention and control of infectious diseases:<br>Experience from severe acute respiratory syndrome in Hong<br>Kong",
                    " COVID-19 Outbreak: the gold rush and the<br>Responsibilities of the scientific community",
                    " Can I Get Force Majeure from a Novel<br>Coronavirus?",
                    " The Effects of an Online Mind-Body Training<br>Program on Stress, Coping Strategies, Emotional<br>Intelligence, Resilience and Psychological State",
                    " Current status of personnel and<br>infrastructure resources for infection prevention and<br>control programs in the Republic of Korea: A national<br>survey",
                    " The role of mental health services during the<br>COVID-19 outbreak in China",
                    " COVID-19: opportunity to learn from necessity",
                    " Alberta family physicians’ willingness to<br>work during an influenza pandemic: a<br>cross-sectional study",
                    " mBio Addresses the Pause in Gain-of-Function<br>(GOF) Experiments Involving Pathogens with<br>Pandemic Potential (PPP)",
                    " Stakeholder views on the acceptability of<br>human infection studies in Malawi",
                    " Biosecurity and biosafety in research on<br>emerging pathogens",
                    " Smallpox as a Weapon for Bioterrorism",
                    " SARS Revisited: The Challenge of Controlling<br>Emerging Infectious Diseases at the Local, Regional,<br>Federal, and Global Levels",
                    " Medical Tourism",
                    " Seasonal and Pandemic Influenza Surveillance<br>and Disease Severity",
                    " Physiotherapists during COVID-19: usual<br>business, in unusual times",
                    " COVID-19: INITIAL PERIOPERATIVE AND<br>PERIANESTHESIA NURSING RESPONSE IN A MILITARY MEDICAL CENTER",
                    " The Ebola epidemic in West Africa: Challenges,<br>opportunities, and policy priority areas",
                    " Alcohol and isolation: Experts comment on<br>drinking behavior during COVID‐19",
                    " A Rational Approach to Estimating the Surgical<br>Demand Elasticity Needed to Guide Manpower<br>Reallocation during Contagious Outbreaks",
                    " COVID-19: Reducing the risk of infection might<br>increase the risk of intimate partner violence",
                    " Case Study – Italy",
                    " Comparison of the Indicators of Psychological<br>Stress in the Population of Hubei Province and<br>Non-Endemic Provinces in China During Two Weeks During the<br>Coronavirus Disease 2019 (COVID-19) Outbreak in February<br>2020",
                    " Chapter 32 Education and training in microbial<br>forensics",
                    " Social Capital and Health-Protective<br>Behavior Intentions in an Influenza Pandemic",
                    " Putting resiliency of a health system to the<br>test: COVID-19 in Taiwan",
                    " Future Challenges for Vaccinologists",
                    " Health shocks and their long-lasting impact on<br>health behaviors: Evidence from the 2009 H1N1<br>pandemic in Mexico",
                    " Middle East respiratory syndrome–related<br>knowledge, preventive behaviours and risk perception<br>among nursing students during outbreak",
                    " Response to the Ebola virus disease outbreak in<br>the Democratic Republic of the Congo",
                    " Improving rheumatic fever surveillance in New<br>Zealand: results of a surveillance sector review",
                    " Biomedical Waste",
                    " Global health goals: lessons from the<br>worldwide effort to eradicate poliomyelitis",
                    " Experience from Malaysia During the COVID-19<br>Movement Control Order",
                    " Are We Ready for Coronavirus Disease 2019<br>Arriving at Schools?",
                    " Identify-Isolate-Inform: A Tool for Initial<br>Detection and Management of Zika Virus Patients in the<br>Emergency Department",
                    " The Impact of Ebola Virus Disease on Government<br>Expenditure in Sierra Leone",
                    " COVID-19 fault lines",
                    " All-Cause Mortality in Tianjin, China,<br>1999-2004",
                    " Barrier Shields: Not Just for Intubations in<br>Today’s COVID-19 World?",
                    " Geriatric mental health and COVID-19: An<br>eye-opener to the situation of the Arab countries in the<br>Middle East and North Africa Region",
                    " The business of making vaccines",
                    " Rapid Implementation of Inpatient<br>Telepalliative Medicine Consultations during COVID-19<br>Pandemic",
                    " Important considerations regarding the<br>future management of Coronavirus (COVID-19)",
                    " Pandemic Stories: Rhetorical Motifs in<br>Journalists’ Coverage of Biomedical Risk",
                    " COVID-19 and ART: the view of the Italian<br>Society of Fertility and Sterility and Reproductive<br>Medicine",
                    " ASTHO at 75: Celebrating the Past and Preparing<br>for the Future",
                    " Public Health Responses to Reemergence of<br>Animal Rabies, Taiwan, July 16–December 28, 2013",
                    " Regional health governance: A suggested<br>agenda for Southern African health diplomacy",
                    " WFPHA: World Federation of Public Health<br>Associations",
                    " Mayo Clinic Proceedings 2004: A View of the<br>Present, a Peek at the Future",
                    " Cancer Patient Care during COVID-19",
                    " Advancing the global health security agenda in<br>light of the 2015 annual Hajj pilgrimage and other<br>mass gatherings",
                    " A community-based approach to influenza<br>assessment and treatment during a pandemic",
                    " The Psychological effect of COVID-19 on the<br>Elderly in China",
                    " The Emergence of an Asia-Pacific Diplomacy of<br>Counter-Terrorism in Tackling the Islamic State Threat",
                    " The Era of Human-Induced Diseases",
                    " Infections in Confined Spaces: Cruise Ships,<br>Military Barracks, and College Dormitories",
                    " The Burden of COVID-19 in People Living with<br>HIV: A Syndemic Perspective",
                    " How health anxiety influences responses to<br>viral outbreaks like COVID-19: What all<br>decision-makers, health authorities, and health care<br>professionals need to know",
                    " Pandemic: lessons for today and tomorrow?",
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                  "text": [
                    " The Influence of Meteorology on the Spread of<br>Influenza: Survival Analysis of an Equine Influenza<br>(A/H3N8) Outbreak",
                    " Effects of density of infected population to<br>the spreading of HIV epidemic in communities",
                    " Análisis del impacto del confinamiento en el<br>número de reproducción del SARS-Cov-2 en España",
                    " A Mathematical Framework for Predicting<br>Lifestyles of Viral Pathogens",
                    " Evaluation of COVID-19 epidemic outbreak<br>caused by temporal contact-increase in South Korea",
                    " Semantic overlay network for large-scale<br>spatial information indexing",
                    " OUTBREAK: A user-friendly georeferencing<br>online tool for disease surveillance",
                    " Deep learning the atmospheric boundary layer<br>height",
                    " Improving estimates of the basic reproductive<br>ratio: Using both the mean and the dispersal of<br>transition times",
                    " Assessing the Effects of Metropolitan-Wide<br>Quarantine on the Spread of COVID-19 in Public Space and<br>Households",
                    " Epidemic Models: Their Spread, Analysis and<br>Invasions in Scale-Free Networks",
                    " A Web Search Method Based on the Temporal<br>Relation of Query Keywords",
                    " Disparities in Spatial Prevalence of Feline<br>Retroviruses due to Data Aggregation: A Case of the<br>Modifiable Areal Unit Problem",
                    " Forecast and evaluation of COVID-19 spreading<br>in USA with Reduced-space Gaussian process<br>regression",
                    " Convolutional Sparse Support Estimator Based<br>Covid-19 Recognition from X-ray Images",
                    " Estimating the COVID-19 Infection Rate:<br>Anatomy of an Inference Problem",
                    " Using Clinicians’ Search Query Data to Monitor<br>Influenza Epidemics",
                    " Snowbirds and infection--new phenomena in<br>pneumonia and influenza hospitalizations from winter<br>migration of older adults: A spatiotemporal analysis",
                    " Network structure of COVID-19 spread and the<br>lacuna in India's testing strategy",
                    " Self-supervised Learning for<br>Semi-supervised Time Series Classification",
                    " Chapter 6 Real-Time Estimation of the Case<br>Fatality Ratio and Risk Factors of Death",
                    " Purim: a rapid method with reduced cost for<br>massive detection of CoVid-19",
                    " Ligand Pose and Orientational Sampling in<br>Molecular Docking",
                    " The Epidemiology of Viral Infections in Dogs<br>and Cats",
                    " Temporal rise in the proportion of younger<br>adults and older adolescents among COVID-19 cases in<br>Germany: evidence of lesser adherence to social<br>distancing practices?",
                    " Shift of percolation thresholds for epidemic<br>spread between static and dynamic small-world<br>networks",
                    " An Epidemiological Modelling Approach for<br>Covid19 via Data Assimilation",
                    " Frequent Travelers and Rate of Spread of<br>Epidemics",
                    " Epidemiology reveals mask wearing by the<br>public is crucial for COVID-19 control",
                    " Agent-Based Modeling for Super-Spreading<br>Events: A Case Study of MERS-CoV Transmission Dynamics<br>in the Republic of Korea",
                    " Accuracy of dengue clinical diagnosis with and<br>without NS1 antigen rapid test: Comparison between<br>human and Bayesian network model decision",
                    " High reproduction number of Middle East<br>respiratory syndrome coronavirus in nosocomial<br>outbreaks: mathematical modelling in Saudi Arabia and<br>South Korea",
                    " Solutions of a disease model with fractional<br>white noise",
                    " Worldwide transmission and seasonal<br>variation of pandemic influenza A(H1N1)2009 virus<br>activity during the 2009–2010 pandemic",
                    " Transmission parameters of the A/H1N1 (2009)<br>influenza virus pandemic: a review",
                    " A Modified SIR Model for the COVID-19 Contagion<br>in Italy",
                    " A global bibliometric analysis of<br>Plesiomonas-related research (1990 – 2017)",
                    " Potential impact of seasonal forcing on a<br>SARS-CoV-2 pandemic",
                    " The Framework for the Prediction of the<br>Critical Turning Period for Outbreak of COVID-19 Spread<br>in China based on the iSEIR Model",
                    " Crowd Control in Plazas Constrained to Social<br>Distancing",
                    " Implications of Nonlinearity, Confounding,<br>and Interactions for Estimating Exposure<br>Concentration-Response Functions in Quantitative Risk Analysis",
                    " Conflicts of Interest during Contact<br>Investigations: A Game-Theoretic Analysis",
                    " Climate impact on spreading of airborne<br>infectious diseases: Complex network based modeling of<br>climate influences on influenza like illnesses",
                    " Impact of the topology of metapopulations on<br>the resurgence of epidemics rendered by a new<br>multiscale hybrid modeling approach",
                    " SPSTracker: Sub-Peak Suppression of Response<br>Map for Robust Object Tracking",
                    " Market clustering and performance of U.S. OD<br>markets",
                    " Intermittent yet coordinated regional<br>strategies can alleviate the COVID-19 epidemic: a network<br>model of the Italian case",
                    " Domain Adaptation via Context Prediction for<br>Engineering Diagram Search",
                    " Electronic and magnetic properties of diiron<br>in extended carbon networks Fe2C6 and Fe2C12 from<br>first principles",
                    " Modelling microbial infection to address<br>global health challenges",
                    " Contact Heterogeneity and Phylodynamics: How<br>Contact Networks Shape Parasite Evolutionary Trees",
                    " Geometrically Closed Positive Varieties of<br>Star-Free Languages",
                    " Momentum managing epidemic spread and Bessel<br>functions",
                    " Effects of Network Structure, Competition and<br>Memory Time on Social Spreading Phenomena",
                    " COVID-19 Should be Suppressed by Mixed<br>Constraints -- from Simulations on Constrained Scale-Free<br>Networks",
                    " Forensic interpretation of molecular<br>variation on networks of disease transmission and<br>genetic inheritance",
                    " Enhancing the Robustness of Smartphone<br>Photoplethysmography: A Signal Quality Index Approach",
                    " Decline in PM2.5 Concentrations over Major<br>Cities Around the World Associated with COVID-19",
                    " Multi-Competitive Viruses over Static and<br>Time--Varying Networks",
                    " Solving the master equation for Indels",
                    " Using observational data to quantify bias of<br>traveller-derived COVID-19 prevalence estimates in Wuhan, China",
                    " A Meta-Analysis of the Association between<br>Gender and Protective Behaviors in Response to<br>Respiratory Epidemics and Pandemics",
                    " Initial human transmission dynamics of the<br>pandemic (H1N1) 2009 virus in North America",
                    " Constructal Pattern Formation in Nature,<br>Pedestrian Motion, and Epidemics Propagation",
                    " Stochastic persistence and stationary<br>distribution in an SIS epidemic model with media coverage",
                    " Estimation of the epidemic properties of the<br>2019 novel coronavirus: A mathematical modeling<br>study",
                    " Anisotropic osmosis filtering for shadow<br>removal in images",
                    " Time Varying Markov Process with Partially<br>Observed Aggregate Data; An Application to Coronavirus",
                    " Cantor-solus and Cantor-multus<br>Distributions",
                    " CoronaVis: A Real-time COVID-19 Tweets<br>Analyzer",
                    " Optimally Robust Kalman Filtering at Work:<br>AO-, IO-, and Simultaneously IO- and AO- Robust<br>Filters",
                    " Conclusion: The Next Decade and Beyond",
                    " iSNO-AAPair: incorporating amino acid<br>pairwise coupling into PseAAC for predicting cysteine<br>S-nitrosylation sites in proteins",
                    " Epidemiologically and Socio-economically<br>Optimal Policies via Bayesian Optimization",
                    " Optimal Allocation of COVID-19 Test Kits Among<br>Accredited Testing Centers in the Philippines",
                    " Competitive impact of the air ticket levy on the<br>European airline market",
                    " Dynamics of HIV/AIDS in Turkey from 1985 to 2016",
                    " Visual analytics of geo-social interaction<br>patterns for epidemic control",
                    " Intervention Serology and Interaction<br>Substitution: Modeling the Role of 'Shield Immunity' in<br>Reducing COVID-19 Epidemic Spread",
                    " Infections on the move: how transient phases of<br>host movement influence disease spread",
                    " Ecological niche modeling to determine<br>potential niche of Vaccinia virus: a case only study",
                    " Optimal control of a fractional order model for<br>granular SEIR epidemic with uncertainty",
                    " A Compressed Sensing Approach to<br>Group-testing for COVID-19 Detection",
                    " Contact Heterogeneity, Rather Than<br>Transmission Efficiency, Limits the Emergence and Spread of<br>Canine Influenza Virus",
                    " \"Stay Nearby or Get Checked\": A Covid-19<br>Lockdown Exit Strategy",
                    " How Quickly Can We Predict Users’ Ratings on<br>Aesthetic Evaluations of Websites? Employing Machine<br>Learning on Eye-Tracking Data",
                    " Object Segmentation Tracking from Generic<br>Video Cues",
                    " Energy Efficient Software Development<br>Process Evaluation for MacOS Devices",
                    " COVID-19: $R_0$ is lower where outbreak is<br>larger",
                    " Facilitating Access to Multilingual COVID-19<br>Information via Neural Machine Translation",
                    " Learning to Rank Images with Cross-Modal Graph<br>Convolutions",
                    " Impact of meteorological factors on the<br>COVID-19 transmission: A multi-city study in China",
                    " Control dynamics of severe acute respiratory<br>syndrome transmission",
                    " The potential of targeted antibody<br>prophylaxis in SARS outbreak control: A mathematic<br>analysis",
                    " Interactions among human behavior, social<br>networks, and societal infrastructures: A Case Study in<br>Computational Epidemiology",
                    " The transmissibility of novel Coronavirus in<br>the early stages of the 2019-20 outbreak in Wuhan:<br>Exploring initial point-source exposure sizes and<br>durations using scenario analysis"
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                  "mode": "markers",
                  "name": "All Clusters",
                  "text": [
                    " Evidence-Based Medicine in China",
                    " Bat and virus",
                    " Intensive Care Unit Preparedness During<br>Pandemics and Other Biological Threats",
                    " Effect of Cryptosporidium parvum infection on<br>the absorptive capacity and paracellular<br>permeability of the small intestine in neonatal calves",
                    " Respiratory syncytial virus evaluation among<br>asymptomatic and symptomatic subjects in a university<br>hospital in Sao Paulo, Brazil, in the period of 2009‐2013",
                    " Willingness to accept a future influenza<br>A(H7N9) vaccine in Beijing, China",
                    " Ischemia-reperfusion Injury of the Lung: Role<br>of Surfactant",
                    " Complement Fixing Antibodies to Respiratory<br>Viruses in Children in Jos, Nigeria",
                    " Robot assisted surgery during the COVID-19<br>pandemic, especially for gynecological cancer: a<br>statement of the Society of European Robotic<br>Gynaecological Surgery (SERGS)",
                    " Hospital ventilation simulation for the study<br>of potential exposure to contaminants",
                    " Letter: Strategies for Prevention and Control<br>of 2019 Novel Coronavirus Infection Among<br>Medical Staff",
                    " The human viral challenge model: accelerating<br>the evaluation of respiratory antivirals,<br>vaccines and novel diagnostics",
                    " CFD simulation of airborne pathogen transport<br>due to human activities",
                    " Antiviral activities of ISG20 in<br>positive-strand RNA virus infections",
                    " The Influence of Meteorology on the Spread of<br>Influenza: Survival Analysis of an Equine Influenza<br>(A/H3N8) Outbreak",
                    " Examination for a viral co-factor in<br>postweaning multisystemic wasting syndrome (PMWS)",
                    " Studying the progress of COVID-19 outbreak in<br>India using SIRD model",
                    " Reply to letter to the editor ‘Lessons from<br>COVID-19 to Future Evidence Synthesis Efforts: First<br>Living Search Strategy and Out of Date Scientific<br>Publishing and Indexing Industry",
                    " Effects of density of infected population to<br>the spreading of HIV epidemic in communities",
                    " Exploring Leptospiral proteomes to identify<br>potential candidates for vaccine design against<br>Leptospirosis using an immunoinformatics approach",
                    " Civil Society Involvement in National<br>HIV/AIDS Programs",
                    " Infants Born to Mothers With a New Coronavirus<br>(COVID-19)",
                    " Trends in Notifiable Infectious Diseases in<br>China: Implications for Surveillance and Population<br>Health Policy",
                    " Oral immunization with LacVax® OmpA induces<br>protective immune response against Shigella flexneri 2a<br>ATCC 12022 in a murine model",
                    " Rapid detection of viral antibodies based on<br>multifunctional Staphylococcus aureus nanobioprobes",
                    " Development of a reverse<br>transcription-loop-mediated isothermal amplification (RT-LAMP) assay for<br>the detection of porcine pegivirus",
                    " An Overview on the Field of Micro- and<br>Nanotechnologies for Synthetic Peptide-Based Vaccines",
                    " The Innate Antiviral Response in Animals: An<br>Evolutionary Perspective from Flagellates to Humans",
                    " Análisis del impacto del confinamiento en el<br>número de reproducción del SARS-Cov-2 en España",
                    " A severe case with co-infection of SARS-CoV-2<br>and common respiratory pathogens",
                    " A multiplex real-time PCR panel assay for<br>simultaneous detection and differentiation of 12 common<br>swine viruses",
                    " Olfactory Bulb Magnetic Resonance Imaging in<br>SARS-CoV-2-Induced Anosmia: The First Report",
                    " Biochemical and genetic analysis of the role of<br>the viral polymerase in enterovirus<br>recombination",
                    " Collaborative Management Strategies for Drug<br>Shortages in Neurocritical Care",
                    " Clinical features, genetics, and outcome of<br>pediatric patients with hemophagocytic<br>lymphohistiocytosis in Korea: report of a nationwide survey from<br>Korea Histiocytosis Working Party",
                    " Pneumonia and pericarditis in a child with<br>HRV-C infection: A case report",
                    " Effects of Surface Material, Ventilation, and<br>Human Behavior on Indirect Contact Transmission<br>Risk of Respiratory Infection",
                    " Profiling COVID-19 pneumonia progressing<br>into the cytokine storm syndrome: results from a<br>single Italian Centre study on tocilizumab versus<br>standard of care.",
                    " Optimal control of an SIR epidemic through<br>finite-time non-pharmaceutical intervention",
                    " Gammacoronavirus(‡): Coronaviridae",
                    " Nosocomial Tuberculosis in India",
                    " Comparative Evaluation of Six Commercialized<br>Multiplex PCR Kits for the Diagnosis of Respiratory<br>Infections",
                    " Effect of various decontamination procedures<br>on disposable N95 mask integrity and SARS-CoV-2<br>infectivity",
                    " Intermediates in the constitutive and<br>regulated secretory pathways released in vitro from<br>semi-intact cells",
                    " Human astroviruses: in silico analysis of the<br>untranslated region and putative binding sites of cellular<br>proteins",
                    " Contact among healthcare workers in the<br>hospital setting: developing the evidence base for<br>innovative approaches to infection control",
                    " Targeting Membrane-Bound Viral RNA Synthesis<br>Reveals Potent Inhibition of Diverse Coronaviruses<br>Including the Middle East Respiratory Syndrome Virus",
                    " Collagen Vascular Diseases and Disorders of<br>Connective Tissue",
                    " Severe acute respiratory syndrome<br>coronavirus nucleocapsid protein confers ability to<br>efficiently produce virus-like particles when<br>substituted for the human immunodeficiency virus<br>nucleocapsid domain",
                    " Poxvirus Exploitation of the<br>Ubiquitin-Proteasome System",
                    " Clomiphene and Its Isomers Block Ebola Virus<br>Particle Entry and Infection with Similar Potency:<br>Potential Therapeutic Implications",
                    " Examining the inclusion of patients and their<br>family members in infection prevention and control<br>policies and guidelines across Bangladesh, Indonesia,<br>and South Korea",
                    " On predicting the novel COVID-19 human<br>infections by using Infectious Disease modelling method<br>in the Indian State of Tamil Nadu during 2020",
                    " “Impact of the COVID-19 pandemic on<br>Gastroenterology Divisions in Italy: a national survey”",
                    " Validation of a multiplex reverse<br>transcriptase PCR ELISA for the detection of 19 respiratory<br>tract pathogens",
                    " Activation of the Unfolded Protein Response Is<br>Required for Defenses against Bacterial Pore-Forming<br>Toxin In Vivo",
                    " A rapid and quantitative assay for measuring<br>neutralizing antibodies of Coxsackievirus B3",
                    " The disguised pandemic: The importance of data<br>normalization in COVID-19 web mapping",
                    " Chapter 1 Protein-Rich By-Products:<br>Production Statistics, Legislative Restrictions, and<br>Management Options",
                    " A Mathematical Framework for Predicting<br>Lifestyles of Viral Pathogens",
                    " Oral recombinant Lactobacillus vaccine<br>targeting the intestinal microfold cells and dendritic<br>cells for delivering the core neutralizing epitope<br>of porcine epidemic diarrhea virus",
                    " Experimental inoculation of late term<br>pregnant sows with a field isolate of porcine<br>reproductive and respiratory syndrome vaccine-derived<br>virus",
                    " Evaluation of the Replication,<br>Pathogenicity, and Immunogenicity of Avian Paramyxovirus<br>(APMV) Serotypes 2, 3, 4, 5, 7, and 9 in Rhesus Macaques",
                    " COVID-19 in people living with human<br>immunodeficiency virus: a case series of 33 patients",
                    " An Assay for Mannan‐Binding<br>Lectin‐Associated Serine Protease 3, MASP‐3",
                    " Clinical and Molecular Epidemiology of Human<br>Bocavirus in Respiratory and Fecal Samples from Children<br>in Hong Kong",
                    " Anti-Asian sentiment in the United States –<br>COVID-19 and history",
                    " New challenges in the COVID-19 pandemic",
                    " Glial Cell Lines: An Overview",
                    " Recommendations for Triage, Prioritization<br>and Treatment of Breast Cancer Patients During the<br>COVID-19 Pandemic",
                    " Specificity, kinetics and longevity of<br>antibody responses to avian influenza A(H7N9) virus<br>infection in humans",
                    " Modulation of Airway Responsiveness to<br>Acetylcholine by Nitric Oxide in a Rabbit Model",
                    " Physicians Abstracts",
                    " Evidence for electrogenic sodium-dependent<br>ascorbate transport in rat astroglia",
                    " Pulmonary Infections",
                    " IL-13 signaling via IL-13Rα(2) triggers<br>TGF-β(1)-dependent allograft fibrosis",
                    " Impact of the COVID-19 Pandemic on Mental<br>Health and Quality of Life among Local Residents in<br>Liaoning Province, China: A Cross-Sectional Study",
                    " Abstracts of oral presentations",
                    " Evaluation of COVID-19 epidemic outbreak<br>caused by temporal contact-increase in South Korea",
                    " Monoclonal antibodies for prophylactic and<br>therapeutic use against viral infections",
                    " Detection and identification of viruses by<br>electron microscopy",
                    " Identification of novel and diverse<br>rotaviruses in rodents and insectivores, and evidence of<br>cross-species transmission into humans",
                    " Clathrin-dependent localization of alpha 1,3<br>mannosyltransferase to the Golgi complex of Saccharomyces<br>cerevisiae",
                    " Modeling site-specific amino-acid<br>preferences deepens phylogenetic estimates of viral<br>sequence divergence",
                    " Synthesis of<br>5-isoxazol-5-yl-2′-deoxyuridines exhibiting antiviral activity against HSV and<br>several RNA viruses",
                    " What Happened to the Foundations of Eurasian<br>Health Governance? Research Initiatives for Health<br>Security Capacity Building",
                    " A Two-Year Study of Bacterial, Viral, and<br>Parasitic Agents Associated with Diarrhea in Rural<br>Bangladesh",
                    " The Role of Carbohydrates in Infection<br>Strategies of Enteric Pathogens",
                    " Semantic overlay network for large-scale<br>spatial information indexing",
                    " Computational Sequence Analysis of Mammalian<br>Reovirus Proteins",
                    " Protein degradation systems in viral<br>myocarditis leading to dilated cardiomyopathy",
                    " Coronavirus MHV-A59 infects the lung and<br>causes severe pneumonia in C57BL/6 mice",
                    " Response to “The imaginary ‘Asian Super<br>Consumer’: A critique of demand reduction campaigns for<br>the illegal wildlife trade”",
                    " Stimulation with a class A CpG oligonucleotide<br>enhances resistance to infection with feline viruses<br>from five different families",
                    " Chapter 96 Critical Care Viral Infections",
                    " Parasitic Diseases of the Lung",
                    " Opportunistic bacterial, viral and fungal<br>infections of the lung",
                    " Asthma and COPD",
                    " Viral metagenomic analysis of bushpigs<br>(Potamochoerus larvatus) in Uganda identifies novel variants<br>of Porcine parvovirus 4 and Torque teno sus virus 1<br>and 2",
                    " Rapid diagnostics urgently needed for killer<br>infections",
                    " Host Factors in Coronavirus Replication",
                    " Follow-up of the health conditions of an urban<br>colony of free-roaming cats (Felis catus Linnaeus,<br>1758) in the city of Rio de Janeiro, Brazil",
                    " Characterization of avian influenza viruses<br>isolated from domestic ducks in Vietnam in 2009 and 2010",
                    " The CoRisk-Index: A data-mining approach to<br>identify industry-specific risk assessments related<br>to COVID-19 in real-time",
                    " DPP4-directed therapeutic strategies for<br>MERS-CoV",
                    " A corn-based delivery system for animal<br>vaccines: an oral transmissible gastroenteritis virus<br>vaccine boosts lactogenic immunity in swine",
                    " OUTBREAK: A user-friendly georeferencing<br>online tool for disease surveillance",
                    " Meta-analysis of transcriptomes of SARS-Cov2<br>infected human lung epithelial cells identifies<br>transmembrane serine proteases co-expressed with ACE2 and<br>biological processes related to viral entry, immunity,<br>inflammation and cellular stress",
                    " Survival of Enveloped and Non-Enveloped<br>Viruses on Inanimate Surfaces",
                    " Deep learning the atmospheric boundary layer<br>height",
                    " C3P3-G1: first generation of a eukaryotic<br>artificial cytoplasmic expression system",
                    " Synthesis and structure-activity<br>relationship studies of water-soluble<br>β-cyclodextrin-glycyrrhetinic acid conjugates as potential anti-influenza<br>virus agents",
                    " Analysis of the N Protein in Feline Coronavirus<br>Strains in Italy",
                    " A CRISPR/Cas9 and Cre/Lox system-based<br>express vaccine development strategy against<br>re-emerging Pseudorabies virus",
                    " Co-infection with respiratory pathogens<br>among COVID-2019 cases",
                    " Pooling RT-PCR test of SARS-CoV-2 for large<br>cohort of 'healthy' and infection-suspected<br>patients: A prospective and consecutive study on 1,000<br>individuals",
                    " Can biowarfare agents be defeated with light?",
                    " Action Mechanisms of Lithium Chloride on Cell<br>Infection by Transmissible Gastroenteritis<br>Coronavirus",
                    " Improving estimates of the basic reproductive<br>ratio: Using both the mean and the dispersal of<br>transition times",
                    " Assessing the Effects of Metropolitan-Wide<br>Quarantine on the Spread of COVID-19 in Public Space and<br>Households",
                    " Epidemic Models: Their Spread, Analysis and<br>Invasions in Scale-Free Networks",
                    " Pathogenic characteristics of persistent<br>feline enteric coronavirus infection in cats",
                    " A Web Search Method Based on the Temporal<br>Relation of Query Keywords",
                    " Association of visitation policy and health<br>care-acquired respiratory viral infections in hospitalized<br>children",
                    " Possible Transfusion-Related Acute Lung<br>Injury Following Convalescent Plasma Transfusion in<br>a Patient With Middle East Respiratory Syndrome",
                    " Protecting health workers from infectious<br>disease transmission: an exploration of a<br>Canadian-South African partnership of partnerships",
                    " The changes of prevalence and etiology of<br>pediatric pneumonia from National Emergency Department<br>Information System in Korea, between 2007 and 2014",
                    " Maternally-derived passive immunity to<br>enterotropic mouse hepatitis virus",
                    " Antimicrobial and immunomodulatory activity<br>induced by loperamide in mycobacterial infections",
                    " Investigation into the Role of Potentially<br>Contaminated Feed as a Source of the First-Detected<br>Outbreaks of Porcine Epidemic Diarrhea in Canada",
                    " Land degradation of abandoned croplands in the<br>Xilingol steppe region, Inner Mongolia, China",
                    " Human metapneumovirus in paediatric<br>intensive care unit (PICU) admissions in the United<br>Kingdom (UK) 2006–2014",
                    " Analysis of genetic variability of<br>respiratory syncytial virus groups A and B in Kuwait",
                    " Department of Homeland Security national<br>planning scenarios: a spectrum of imaging findings to<br>educate the radiologists",
                    " Dipeptidyl peptidase 4 is a functional<br>receptor for the emerging human coronavirus-EMC",
                    " Thermal investigation on whole plants and<br>plant tissues",
                    " Molecular Dissection of Porcine Reproductive<br>and Respiratory Virus Putative Nonstructural<br>Protein 2",
                    " Disparities in Spatial Prevalence of Feline<br>Retroviruses due to Data Aggregation: A Case of the<br>Modifiable Areal Unit Problem",
                    " Forecast and evaluation of COVID-19 spreading<br>in USA with Reduced-space Gaussian process<br>regression",
                    " Metagenomic analysis of a sample from a patient<br>with respiratory tract infection reveals the<br>presence of a γ-papillomavirus",
                    " Integrated Disease Surveillance and Response<br>(IDSR) in Malawi: Implementation gaps and challenges<br>for timely alert",
                    " Biologics in Rhinology – Forthcoming<br>Personalized Concepts: the Future Starts Today",
                    " Epidemiological, demographic, and clinical<br>characteristics of 47 cases of Middle East respiratory syndrome<br>coronavirus disease from Saudi Arabia: a descriptive study",
                    " Ambient nitrogen dioxide pollution and spread<br>ability of COVID-19 in Chinese cities",
                    " Convolutional Sparse Support Estimator Based<br>Covid-19 Recognition from X-ray Images",
                    " Biosecurity Programs and Assets",
                    " Pathologic Findings in Novel Influenza A<br>(H1N1) Virus (“Swine Flu”) Infection: Contrasting<br>Clinical Manifestations and Lung Pathology in Two Fatal<br>Cases",
                    " SARS: health care work can be hazardous to<br>health",
                    " Estimating the COVID-19 Infection Rate:<br>Anatomy of an Inference Problem",
                    " Recognition of aerosol transmission of<br>infectious agents: a commentary",
                    " Aminoacyl-tRNA synthetases, therapeutic<br>targets for infectious diseases",
                    " Decoding the enigma of antiviral crisis: Does<br>one target molecule regulate all?",
                    " Vaccinology in the twenty-first century",
                    " The antiviral activity of poly-γ-glutamic<br>acid, a polypeptide secreted by Bacillus sp.,<br>through induction of CD14-dependent type I interferon<br>responses",
                    " Saracatinib Inhibits Middle East Respiratory<br>Syndrome-Coronavirus Replication In Vitro",
                    " Prevention of influenza among travellers<br>attending at a UK travel clinic: beliefs and perceptions.<br>A cross‐sectional study",
                    " Survey of influenza and other respiratory<br>viruses diagnostic testing in US hospitals, 2012–2013",
                    " Treating hypoxemic patients with SARS-COV-2<br>pneumonia: Back to applied physiology",
                    " The fiscal value of human lives lost from<br>coronavirus disease (COVID-19) in China",
                    " Virus detection and identification using<br>random multiplex (RT)-PCR with 3'-locked random<br>primers",
                    " Comparison of initial high resolution<br>computed tomography features in viral pneumonia<br>between metapneumovirus infection and severe acute<br>respiratory syndrome",
                    " Cellular cholesterol is required for porcine<br>nidovirus infection",
                    " Using Clinicians’ Search Query Data to Monitor<br>Influenza Epidemics",
                    " Mysterious Virus: A Review on Behavior and<br>Treatment Approaches of the Novel Coronavirus,<br>2019-nCoV",
                    " Influenza and Endemic Viral Pneumonia",
                    " Software for optimization of SNP and PCR-RFLP<br>genotyping to discriminate many genomes with the fewest<br>assays",
                    " The phylogeny of SARS coronavirus",
                    " Inactivation of Middle East respiratory<br>syndrome coronavirus (MERS‐CoV) in plasma products<br>using a riboflavin‐based and ultraviolet<br>light‐based photochemical treatment",
                    " Bayesian Inference of COVID-19 Spreading<br>Rates in South Africa",
                    " Identification of cross‐reactive antibodies<br>for the detection of lymphocytes, myeloid cells<br>and haematopoietic precursors in the naked mole<br>rat",
                    " Treatment of Severe Pneumonia due to COVID-19<br>with Peginterferon alfa 2a",
                    " Immunopathogenesis of 2009 pandemic<br>influenza",
                    " Influence of the Pressure Difference and Door<br>Swing on Heavy Contaminants Migration between Rooms",
                    " Blocking transmission of Middle East<br>respiratory syndrome coronavirus (MERS-CoV) in llamas by<br>vaccination with a recombinant spike protein",
                    " Population Wellness: Keeping Cats Physically<br>and Behaviorally Healthy",
                    " In Vitro Activity of Sodium New Houttuyfonate<br>Alone and in Combination with Oxacillin or<br>Netilmicin against Methicillin-Resistant<br>Staphylococcus aureus",
                    " A novel low virulent respiratory infectious<br>bronchitis virus originating from the recombination of<br>QX, TW and 4/91 genotype strains in China",
                    " Practical application of bioinformatics by<br>the multidisciplinary VIZIER consortium",
                    " Comparison of loop-mediated isothermal<br>amplification assay and smear microscopy with culture for the<br>diagnostic accuracy of tuberculosis",
                    " Different location, same results?",
                    " Families and clans of cysteine peptidases",
                    " Snowbirds and infection--new phenomena in<br>pneumonia and influenza hospitalizations from winter<br>migration of older adults: A spatiotemporal analysis",
                    " Protective effects of the Francisella<br>tularensis ΔpdpC mutant against its virulent parental<br>strain SCHU P9 in Cynomolgus macaques",
                    " Detection and molecular characterization of<br>infectious bronchitis virus isolated from recent<br>outbreaks in broiler flocks in Thailand",
                    " Plasmodium vivax HAP2/GCS1 gene exhibits<br>limited genetic diversity among parasite isolates<br>from the Greater Mekong Subregion",
                    " Investing in Public Health Microbiology<br>Laboratories in Western Balkan Countries Enhances Health<br>Security From Communicable Disease Threats in Europe",
                    " The New International Health Regulations and<br>the Federalism Dilemma",
                    " 27th International Congress of the European<br>Association for Endoscopic Surgery (EAES) Sevilla, Spain,<br>12–15 June 2019",
                    " Coronavirus Disease 2019 (COVID-19)<br>Pneumonia in a Hemodialysis Patient",
                    " Interleukin-2 after autologous stem cell<br>transplantation for hematologic malignancy: a phase I/II study",
                    " Diffusion‐weighted MRI abnormalities in an<br>outbreak of Streptococcus agalactiae Serotype III,<br>multilocus sequence type 283 meningitis",
                    " Tuberculosis care for pregnant women: a<br>systematic review",
                    " Qatar ECMO program: Past, present, and future",
                    " Determining the molecular drivers of<br>species-specific interferon-stimulated gene product 15<br>interactions with nairovirus ovarian tumor domain<br>proteases",
                    " Clinical analysis of ten pregnant women with<br>COVID-19 in Wuhan, China: A retrospective study",
                    " Post-traumatic Stress Disorder Among Health<br>Care Providers Two Years Following the Israeli<br>Attacks Against Gaza Strip in August 2014: Another Call<br>for Policy Intervention",
                    " 20th ECP",
                    " Hantaan Virus Infection Induces CXCL10<br>Expression through TLR3, RIG-I, and MDA-5 Pathways<br>Correlated with the Disease Severity",
                    " A competitive inhibition ELISA for the<br>differentiation of serum antibodies from pigs infected with<br>transmissible gastroenteritis virus (TGEV) or with the<br>TGEV-related porcine respiratory coronavirus",
                    " West Nile virus impacts in American crow<br>populations are associated with human land use and climate",
                    " The knowledge level and precautionary<br>measures taken by older adults during the SARS outbreak<br>in Hong Kong",
                    " Reply to Leow",
                    " A quasi-experiment on using guided mobile<br>learning interventions in ESL classrooms: Time use and<br>academic performance",
                    " Biophysical Analyses for Probing<br>Glycan-Protein Interactions",
                    " Structure of the Respiratory Syncytial Virus<br>Polymerase Complex",
                    " Variant Creutzfeldt–Jakob disease and the<br>Canadian blood system after the tainted blood tragedy",
                    " Development of Vaccine Delivery Vehicles<br>Based on Lactic Acid Bacteria",
                    " Monoclonal antibody analysis of Porcine<br>Reproductive and Respiratory Syndrome virus epitopes<br>associated with antibody-dependent enhancement and<br>neutralization of virus infection",
                    " Effect of cadmium on the expression levels of<br>interleukin-1α and interleukin-10 cytokines in human lung<br>cells",
                    " Impacts of genomic networks governed by<br>human-specific regulatory sequences and genetic loci<br>harboring fixed human-specific neuro-regulatory<br>single nucleotide mutations on phenotypic traits of<br>Modern Humans",
                    " Lung Transplantation and Precision Medicine",
                    " Schmallenberg virus: Responding to the<br>challenge",
                    " Genetic variability of human metapneumovirus<br>amongst an all ages population in Cambodia between 2007<br>and 2009",
                    " Prematurity, a significant predictor for<br>worse outcome in viral bronchiolitis: a comparative<br>study in infancy",
                    " Molecular mechanism of action of repurposed<br>drugs and traditional Chinese medicine used for the<br>treatment of patients infected with COVID-19: A<br>systematic review",
                    " The impact of non-pharmaceutical<br>interventions for 2009 H1N1 influenza on travel intentions: A<br>model of goal-directed behavior",
                    " Silver Nanoparticles Induce HePG-2 Cells<br>Apoptosis Through ROS-Mediated Signaling Pathways",
                    " Emerging Infectious Diseases in Camelids",
                    " The economic impact of the Coronavirus 2019<br>(Covid-2019): Implications for the mining industry",
                    " Comprehensive analysis of the codon usage<br>patterns in the envelope glycoprotein E2 gene of the<br>classical swine fever virus",
                    " Surveillance of influenza in Apulia, Italy,<br>1999–2000, 2000–2001, 2001–2002, and 2002–2003 seasons",
                    " On pandemics and the duty to care: whose duty?<br>who cares?",
                    " Synergistic inhibition of human<br>cytomegalovirus replication by interferon-alpha/beta and<br>interferon-gamma",
                    " Designing Medical Facilities to Care for<br>Patients with Highly Hazardous Communicable Diseases",
                    " Microdevice‐based solid‐phase polymerase<br>chain reaction for rapid detection of pathogenic<br>microorganisms",
                    " Transport impacts on atmosphere and climate:<br>Aviation",
                    " SARS-CoV-2 infection in London, England:<br>Impact of lockdown on community point-prevalence,<br>March-May 2020",
                    " Multi-Organ Damage in Human Dipeptidyl<br>Peptidase 4 Transgenic Mice Infected with Middle East<br>Respiratory Syndrome-Coronavirus",
                    " Comprehensive characterisation of<br>pancreatic ductal adenocarcinoma with microsatellite<br>instability: histology, molecular pathology and clinical<br>implications",
                    " The emerging influenza virus threat: status<br>and new prospects for its therapy and control",
                    " Human Monoclonal Antibody Combination<br>against SARS Coronavirus: Synergy and Coverage of<br>Escape Mutants",
                    " On the possible role of robustness in the<br>evolution of infectious diseases",
                    " Targeted delivery of ribavirin improves<br>outcome of murine viral fulminant hepatitis via<br>enhanced anti‐viral activity",
                    " G-quadruplex-interacting compounds alter<br>latent DNA replication and episomal persistence of<br>KSHV",
                    " Studying Vulnerable Populations in the<br>Context of Enhanced Vulnerability",
                    " The Synergistic Interaction of Interferon<br>Types I and II Leads to Marked Reduction in Severe<br>Acute Respiratory Syndrome-Associated<br>Coronavirus Replication and Increase in the Expression of<br>mRNAs for Interferon-Induced Proteins",
                    " Network structure of COVID-19 spread and the<br>lacuna in India's testing strategy",
                    " The One Health path to infectious disease<br>prevention and resilience",
                    " Self-supervised Learning for<br>Semi-supervised Time Series Classification",
                    " The effect of timing on community acquired<br>respiratory virus infection mortality during the first<br>year after allogeneic hematopoietic stem cell<br>transplantation: a prospective epidemiological survey",
                    " Relationship between polymorphism of DC-SIGN<br>(CD209) gene and the susceptibility to pulmonary<br>tuberculosis in an eastern Chinese population",
                    " Healthcare-Associated Infections in<br>Pediatrics",
                    " Our Response to COVID-19 as Endocrinologists<br>and Diabetologists",
                    " Novel hantavirus identified in black-bearded<br>tomb bats, China",
                    " Clinical and historical features associated<br>with severe COVID-19 infection: a systematic<br>review",
                    " Extra-intestinal detection of canine<br>kobuvirus in a puppy from Southern Brazil",
                    " Middle East Respiratory Syndrome Coronavirus<br>and the One Health concept",
                    " The malaria parasite Plasmodium falciparum in<br>red blood cells selectively takes up serum<br>proteins that affect host pathogenicity",
                    " Gateway cloning is compatible with protein<br>secretion from Pichia pastoris",
                    " Biosensors in clinical chemistry — 2011 update",
                    " The case for ILI surveillance",
                    " Epidemiological and clinical features of<br>human coronavirus infections among different<br>subsets of patients",
                    " The relevance of complement to virus biology",
                    " Identification of Human Adenovirus in<br>Respiratory Samples with Luminex Respiratory Virus Panel<br>Fast V2 Assay and Real-Time Polymerase Chain<br>Reaction",
                    " Dental autopsy recommendations in SARS-CoV-2<br>infected cases",
                    " Risk factors for chronic post-traumatic<br>stress disorder (PTSD) in SARS survivors",
                    " Cord blood hemopoietic progenitor profiles<br>predict acute respiratory symptoms in infancy",
                    " An inactivated influenza D virus vaccine<br>partially protects cattle from respiratory disease<br>caused by homologous challenge",
                    " Alternative Experimental Models for Studying<br>Influenza Proteins, Host–Virus Interactions and<br>Anti-Influenza Drugs",
                    " Post COVID-19: Planning strategies to resume<br>orthopaedic surgery –challenges and considerations",
                    " Tight Junctions Go Viral!",
                    " The E3 ligase TRIM56 is a host restriction<br>factor of Zika virus and depends on its RNA-binding<br>activity but not miRNA regulation, for antiviral<br>function",
                    " Mutational analysis of the SDD sequence motif<br>of a PRRSV RNA-dependent RNA polymerase",
                    " Recombinant Tula hantavirus shows reduced<br>fitness but is able to survive in the presence of a<br>parental virus: analysis of consecutive passages in a<br>cell culture",
                    " Chapter 6 Real-Time Estimation of the Case<br>Fatality Ratio and Risk Factors of Death",
                    " Purim: a rapid method with reduced cost for<br>massive detection of CoVid-19",
                    " Availability, consistency and evidence-base<br>of policies and guidelines on the use of mask and<br>respirator to protect hospital health care workers: a<br>global analysis",
                    " Design of microarray probes for virus<br>identification and detection of emerging viruses at the genus<br>level",
                    " Abstracts from the 3rd International Genomic<br>Medicine Conference (3rd IGMC 2015): Jeddah, Kingdom of<br>Saudi Arabia. 30 November - 3 December 2015",
                    " Pandemics: avoiding the mistakes of 1918",
                    " Phage display as a promising approach for<br>vaccine development",
                    " Feline infectious peritonitis: Role of the<br>feline coronavirus 3c gene in intestinal tropism and<br>pathogenicity based upon isolates from resident and adopted<br>shelter cats",
                    " Diagnostic electron microscopy is still a<br>timely and rewarding method",
                    " Stem cell-derived mitochondria<br>transplantation: a novel strategy and the challenges for the<br>treatment of tissue injury",
                    " IgA-Ab response to spike glycoprotein of<br>SARS-CoV-2 in patients with COVID-19: A longitudinal<br>study",
                    " Biomedicines as Adverse Event Inducers",
                    " Plague as a Biological Weapon",
                    " Advances in MALDI Mass Spectrometry in<br>Clinical Diagnostic Applications",
                    " Travelling Companions: Emerging Diseases of<br>People, Animals and Plants Along the<br>Malawi-Mozambique Border",
                    " Low-cost, easy-to-build non-invasive<br>pressure support ventilator for under-resourced<br>regions: open source hardware description,<br>performance and feasibility testing",
                    " A facile method of mapping neutralizing HIV-1<br>epitopes",
                    " The Last Natural Brain",
                    " Construction of a multiplex allele‐specific<br>PCR‐based universal array (ASPUA) and its application to<br>hearing loss screening",
                    " Glycyrrhizin Exerts Antioxidative Effects in<br>H5N1 Influenza A Virus-Infected Cells and Inhibits<br>Virus Replication and Pro-Inflammatory Gene<br>Expression",
                    " The expression of membrane protein augments<br>the specific responses induced by SARS-CoV<br>nucleocapsid DNA immunization",
                    " Responses of Tropical Bats to Habitat<br>Fragmentation, Logging, and Deforestation",
                    " Risk and Response to Biological Catastrophe in<br>Lower Income Countries",
                    " CFD study of exhaled droplet transmission<br>between occupants under different ventilation<br>strategies in a typical office room",
                    " Steroid-induced osteonecrosis of the femoral<br>head reveals enhanced reactive oxygen species and<br>hyperactive osteoclasts",
                    " Investigation of interunit dispersion in 2D<br>street canyons: A scaled outdoor experiment",
                    " The Placental Protein Syncytin-1 Impairs<br>Antiviral Responses and Exaggerates Inflammatory<br>Responses to Influenza",
                    " Melatonin is responsible for rice resistance<br>to rice stripe virus infection through a nitric<br>oxide-dependent pathway",
                    " Autologous Antibody Capture to Enrich<br>Immunogenic Viruses for Viral Discovery",
                    " Xanthine Oxidase Inhibition by Febuxostat in<br>Macrophages Suppresses Angiotensin II-Induced Aortic<br>Fibrosis",
                    " The prevalence of viral infections in children<br>with cystic fibrosis in a tertiary care center in<br>Saudi Arabia",
                    " The Rotavirus NSP4 Viroporin Domain is a<br>Calcium-conducting Ion Channel",
                    " Characteristics and outcomes of oral<br>antibiotic treated pulmonary exacerbations in children<br>with cystic fibrosis()",
                    " Mitigating the effect of the COVID-19 pandemic<br>on sickle cell disease services in African<br>countries",
                    " Diagnosis of Allergy and Asthma in Childhood",
                    " The role of an Orthopaedic Surgeon in the time of<br>Covid-19 Pandemic–a German perspective",
                    " Management of inflammatory bowel disease<br>patients in the COVID-19 pandemic era: a Brazilian<br>tertiary referral center guidance",
                    " Preventing airborne infection with an<br>intranasal cellulose powder formulation (Nasaleze<br>Travel®)",
                    " A Marker of Systemic Inflammation or Direct<br>Cardiac Injury: Should Cardiac Troponin Levels be<br>Monitored in COVID-19 Patients?",
                    " Ligand Pose and Orientational Sampling in<br>Molecular Docking",
                    " Emerging threats from zoonotic<br>coronaviruses-from SARS and MERS to 2019-nCoV",
                    " Extubation and Changing Endotracheal Tubes",
                    " Improved phylogenomic sampling of<br>free-living nematodes enhances resolution of<br>higher-level nematode phylogeny",
                    " Beyond cells – The virome in the human holobiont",
                    " Establishment of a nanoparticle-assisted<br>RT-PCR assay to distinguish field strains and<br>attenuated strains of porcine epidemic diarrhea virus",
                    " Gastrointestinal Infection Could Be New Focus<br>for Coronavirus Diagnosis",
                    " Antiviral activities of Schizonepeta<br>tenuifolia Briq. against enterovirus 71 in vitro and in<br>vivo",
                    " COVID-19 in Rheumatic Disease Patients on<br>Immunosuppressive Agents",
                    " Case Study of Airborne Pathogen Dispersion<br>Patterns in Emergency Departments with Different<br>Ventilation and Partition Conditions",
                    " Translating Research into Clinical Practice:<br>Functional Recovery Post Total Hip Arthroplasty Using<br>Outcomes Gathered in the Usual Physical Therapy<br>Practice Setting",
                    " Covert COVID-19 complications: Continuing<br>the use of evidence-based drugs to minimize<br>potentially lethal indirect effects of the pandemic in<br>stroke patients",
                    " Mycobacterium avium ssp. paratuberculosis<br>High Shedding in an Adult Female Alpaca, and its<br>Implications for the Rest of the Herd",
                    " The Epidemiology of Viral Infections in Dogs<br>and Cats",
                    " Neonatal Emergencies",
                    " Poster Session Abstracts",
                    " On Health and Water Security",
                    " A Novel Video Tracking Method to Evaluate the<br>Effect of Influenza Infection and Antiviral<br>Treatment on Ferret Activity",
                    " Cynanchum wilfordii Polysaccharides<br>Suppress Dextran Sulfate Sodium-Induced Acute Colitis<br>in Mice and the Production of Inflammatory<br>Mediators from Macrophages",
                    " Immune-Mediated Central Nervous System<br>Disease—Current Knowledge and Recommendations",
                    " Phylogenetic Analysis of Protein Sequences<br>Based on Distribution of Length About Common<br>Substring",
                    " Functional Involvement of<br>Interferon-Inducible Transmembrane Proteins in Antiviral Immunity",
                    " Microbiologic Methods in the Diagnostics of<br>Upper Respiratory Tract Pathogens",
                    " Feline CD 4 molecules expressed on feline<br>non-lymphoid cell lines are not enough for productive<br>infection of highly lymphotropic feline<br>immunodeficiency virus isolates",
                    " The Effectiveness of Convalescent Plasma and<br>Hyperimmune Immunoglobulin for the Treatment of Severe<br>Acute Respiratory Infections of Viral Etiology: A<br>Systematic Review and Exploratory Meta-analysis",
                    " Recommendation to Optimize Safety of Elective<br>Surgical Care While Limiting the Spread of COVID-19:<br>Primum Non Nocere",
                    " Epidemiological investigation and<br>intergenerational clinical characteristics of 24 COVID-19<br>patients associated with supermarket cluster",
                    " Macrolide-based regimens in absence of<br>bacterial co-infection in critically ill H1N1 patients<br>with primary viral pneumonia",
                    " Measuring compliance with<br>transmission-based isolation precautions: Comparison of<br>paper-based and electronic data collection",
                    " An overview of the highly pathogenic H5N1<br>influenza virus",
                    " Cell adhesion as a novel approach to<br>determining the cellular binding motif on the severe acute<br>respiratory syndrome coronavirus spike protein",
                    " Immunogenicity of Inactivated Influenza<br>Vaccine in Residential Homes for Elderly People",
                    " Lactose malabsorption in Central Australian<br>Aboriginal children hospitalized with acute enteritis",
                    " Steps to a Sustainable Public Health<br>Surveillance Enterprise A Commentary from the<br>International Society for Disease Surveillance",
                    " Acute Respiratory Distress Syndrome as an<br>Organ Phenotype of Vascular Microthrombotic<br>Disease: Based on Hemostatic Theory and Endothelial<br>Molecular Pathogenesis",
                    " Breast Cancer Resistance Protein<br>(BCRP/ABCG2) Inhibits Extra Villous Trophoblast<br>Migration: The Impact of Bacterial and Viral Infection",
                    " Human Bocavirus in French Children",
                    " Development and efficacy of a novel<br>live-attenuated QX-like nephropathogenic infectious<br>bronchitis virus vaccine in China",
                    " Hand hygiene and the novel coronavirus<br>pandemic: The role of healthcare workers",
                    " Responding to Healthcare Disparities and<br>Challenges With Access to Care During COVID-19",
                    " Optimal Pool Size for COVID-19 Group Testing",
                    " The Role of the Renin-Angiotensin System in<br>Hepatic Fibrosis",
                    " Preliminary study to identify severe from<br>moderate cases of COVID-19 using NLR&RDW-SD<br>combination parameter",
                    " Functional community structure of African<br>monodominant Gilbertiodendron dewevrei forest influenced<br>by local environmental filtering",
                    " CHILDHOOD ASTHMA IN BRISBANE:<br>EPIDEMIOLOGICAL OBSERVATIONS",
                    " Temporal rise in the proportion of younger<br>adults and older adolescents among COVID-19 cases in<br>Germany: evidence of lesser adherence to social<br>distancing practices?",
                    " Assessment of in vitro bioactivities of Pis v 1<br>(2S albumin) and Pis v 2.0101 (11S globulin)<br>proteins derived from pistachio (Pistacia vera L.)",
                    " The increase in total knee replacement surgery<br>in Taiwan: A 15-year retrospective study",
                    " Imaging features and evolution on CT in 100<br>COVID-19 pneumonia patients in Wuhan, China",
                    " Shift of percolation thresholds for epidemic<br>spread between static and dynamic small-world<br>networks",
                    " Infection with a respiratory virus before<br>hematopoietic cell transplantation is associated with<br>alloimmune-mediated lung syndromes",
                    " Clinical characteristics of COVID-19 in<br>children compared with adults in Shandong Province,<br>China",
                    " Structural requirements for initiation of<br>cross‐reactivity and CNS autoimmunity with a PLP(139–151) mimic<br>peptide derived from murine hepatitis virus",
                    " Emerging Infectious Diseases in 2012: 20 Years<br>after the Institute of Medicine Report",
                    " Intravenous Fluid Therapy in Calves",
                    " Respiratory viral infection in lower airways<br>of asymptomatic children",
                    " Emerging viral diseases and infectious<br>disease risks",
                    " Inhaled and exhaled nitric oxide",
                    " An Epidemiological Modelling Approach for<br>Covid19 via Data Assimilation",
                    " Communication of bed allocation decisions in a<br>critical care unit and accountability for<br>reasonableness",
                    " Epidemiology of Travel-associated Pandemic<br>(H1N1) 2009 Infection in 116 Patients, Singapore",
                    " Chapter 4 Structure, Organization, and<br>Development of the Mucosal Immune System of the Respiratory<br>Tract",
                    " Is Fever a Red Flag for Bacterial Pneumonia in<br>Children With Viral Bronchiolitis?",
                    " Considerations for the Treatment of<br>Oesophageal Cancer With Radiotherapy During the COVID-19<br>Pandemic",
                    " Cetylpyridinium Chloride (CPC) Exhibits<br>Potent, Rapid Activity Against Influenza Viruses in<br>vitro and in vivo",
                    " Porcine epidemic diarrhea virus: An overview<br>of current virological and serological<br>diagnostic methods",
                    " SARS Vaccine Development",
                    " Respiratory inflammation and infections in<br>high‐performance athletes",
                    " One Health Approach in the South East Asia<br>Region: Opportunities and Challenges",
                    " Distribution of Trichoptera communities in<br>the Hozgargantacatchment (Los Alcornocales<br>Natural Park, SW Spain)",
                    " Central Nervous System: Viral Infection and<br>Immune-Mediated Inflammation",
                    " Antibody epitope repertoire analysis enables<br>rapid antigen discovery and multiplex serology",
                    " Encephalitis Associated with COVID-19<br>Infection in an 11 Year-Old Child",
                    " A Virus-Encoded Cell–Cell Fusion Machine<br>Dependent on Surrogate Adhesins",
                    " Replication of murine coronavirus requires<br>multiple cysteines in the endodomain of spike protein",
                    " Detection of Canine Distemper Virus in Blood<br>Samples by Reverse Transcription Loop‐Mediated<br>Isothermal Amplification",
                    " Frequent Travelers and Rate of Spread of<br>Epidemics",
                    " Transmission risk of patients with COVID-19<br>meeting discharge criteria should be interpreted with<br>caution",
                    " Three-Dimensional Architecture and<br>Biogenesis of Membrane Structures Associated with Plant<br>Virus Replication",
                    " Viral Diversity in Asthma",
                    " Global Trends in Epidemiology of Coronavirus<br>Disease 2019 (COVID-19)",
                    " Expert recommendations on blood purification<br>treatment protocol for patients with severe COVID-19():<br>Recommendation and consensus",
                    " Epidemiology reveals mask wearing by the<br>public is crucial for COVID-19 control",
                    " Quantification of recombinant core-like<br>particles of bluetongue virus using immunosorbent<br>electron microscopy",
                    " Agent-Based Modeling for Super-Spreading<br>Events: A Case Study of MERS-CoV Transmission Dynamics<br>in the Republic of Korea",
                    " Management of chickenpox in pregnant women: an<br>Italian perspective",
                    " Applications of RNA interference: current<br>state and prospects for siRNA-based strategies in<br>vivo",
                    " Index Patient and SARS Outbreak in Hong Kong",
                    " Drosophila CG3303 is an essential<br>endoribonuclease linked to TDP-43-mediated neurodegeneration",
                    " Accuracy of dengue clinical diagnosis with and<br>without NS1 antigen rapid test: Comparison between<br>human and Bayesian network model decision",
                    " Rotavirus-mediated alteration of gut<br>microbiota and its correlation with physiological<br>characteristics in neonatal calves",
                    " High reproduction number of Middle East<br>respiratory syndrome coronavirus in nosocomial<br>outbreaks: mathematical modelling in Saudi Arabia and<br>South Korea",
                    " Efficacy and Safety of Lianhuaqingwen<br>Capsules, a repurposed Chinese Herb, in Patients with<br>Coronavirus disease 2019: A multicenter, prospective,<br>randomized controlled trial",
                    " Surgical Stabilization of Rib Fractures<br>during the COVID-19 Pandemic",
                    " A Novel Vaccine Using Nanoparticle Platform to<br>Present Immunogenic M2e against Avian Influenza<br>Infection",
                    " Retinal pathology in multiple sclerosis:<br>insight into the mechanisms of neuronal pathology",
                    " Molecular and serological investigation of<br>2019-nCoV infected patients: implication of multiple<br>shedding routes",
                    " Prevalence of Korean cats with natural feline<br>coronavirus infections",
                    " Suicidal behaviour and suicide prevention in<br>later life",
                    " Biogenesis and architecture of arterivirus<br>replication organelles",
                    " Respiratory Virus Detection and Clinical<br>Diagnosis in Children Attending Day Care",
                    " Ferret models of viral pathogenesis",
                    " Sensing Microbial RNA in the Cytosol",
                    " An investigation of district spatial<br>variations of childhood diarrhoea and fever morbidity in<br>Malawi",
                    " Altering SARS Coronavirus Frameshift<br>Efficiency Affects Genomic and Subgenomic RNA Production",
                    " A quantitative enzyme-linked immunosorbent<br>assay for bovine herpesvirus type 1 (BHV-1) antibody",
                    " The US Military Commitment to Vaccine<br>Development: A Century of Successes and Challenges",
                    " Antiviral activity of dried extract of Stevia",
                    " The clinical implication of dynamic<br>neutrophil to lymphocyte ratio and D-dimer in COVID-19: A<br>retrospective study in Suzhou China",
                    " Genetic restriction of murine hepatitis virus<br>type 3 expression in liver and brain: comparative<br>study in BALB/c and C3H mice by immunochemistry and<br>hybridization in situ",
                    " Assessing allergenic fungi in house dust by<br>floor wipe sampling and quantitative PCR",
                    " Coronametrics: The UK turns the corner",
                    " Neuroradiological features in COVID-19<br>patients: first evidence in a complex scenario",
                    " Anxiety among university students during the<br>SARS epidemic in Hong Kong",
                    " Obesity and risk of respiratory tract<br>infections: results of an infection-diary based cohort<br>study",
                    " Herpesvirus infection reduces Pol II<br>occupancy of host promoters but spares viral promoters",
                    " Prevalence of porcine circovirus type 3 in pigs<br>in the southeastern Chinese province of Zhejiang",
                    " Application of proteomics technology for<br>analyzing the interactions between host cells and<br>intracellular infectious agents",
                    " Respiratory Syncytial Virus Infection in<br>Elderly Adults",
                    " Fecal Viral Diversity of Captive and Wild<br>Tasmanian Devils Characterized Using Virion-Enriched<br>Metagenomics and Metatranscriptomics",
                    " Experimental Dual Infection of Specific<br>Pathogen‐Free Pigs with Porcine Reproductive and<br>Respiratory Syndrome Virus and Pseudorabies Virus",
                    " Acute and Chronic Otitis Media",
                    " Solutions of a disease model with fractional<br>white noise",
                    " Extracorporeal membrane oxygenation for<br>systemic lupus erythematosus (SLE) with severe ARDS",
                    " Antisense-induced ribosomal frameshifting",
                    " Controlling Middle East Respiratory<br>Syndrome: Lessons Learned From Severe Acute Respiratory<br>Syndrome",
                    " Nanoparticle-Based Vaccines Against<br>Respiratory Viruses",
                    " Coronavirus (COVID-19) Outbreak: What the<br>Department of Radiology Should Know",
                    " Detection limit of negative staining electron<br>microscopy for the diagnosis of bioterrorism‐related<br>micro‐organisms",
                    " Hydrocephalus in Suckling Rats Infected<br>Intracerebrally with Mouse Hepatitis Virus, MHV‐A59",
                    " Protein sequence analysis based on hydropathy<br>profile of amino acids",
                    " Source identification of total petroleum<br>hydrocarbons and polycyclic aromatic hydrocarbons in<br>PM(10) and street dust of a hot spot for petrochemical<br>production: Asaluyeh County, Iran",
                    " What needs to be done to control the spread of<br>Middle East respiratory syndrome coronavirus?",
                    " Case report: atypical presentation of<br>vancomycin induced DRESS syndrome: a case report and<br>review of the literature",
                    " Pandethics",
                    " Antiviral Agents☆",
                    " LightUp® probes in clinical diagnostics",
                    " Data on the stability of darunavir/cobicistat<br>suspension after tablet manipulation",
                    " Update: Severe Respiratory Illness<br>Associated With a Novel Coronavirus—Worldwide,<br>2012–2013",
                    " Outcomes of hematopoietic stem cell<br>transplantation for Hurler's syndrome in Europe: a risk factor<br>analysis for graft failure",
                    " Setting out on a fantastic voyage to advance<br>nanomedicine",
                    " Sequence and analysis of BECV F15 matrix<br>protein",
                    " Natural Disasters",
                    " Study of Particle Dispersion on One Bed<br>Hospital using Computational Fluid Dynamics",
                    " Worldwide transmission and seasonal<br>variation of pandemic influenza A(H1N1)2009 virus<br>activity during the 2009–2010 pandemic",
                    " Ducks: The “Trojan Horses” of H5N1 influenza",
                    " Survey of ophthalmology practitioners in A&E<br>on current COVID-19 guidance at three Major UK Eye<br>Hospitals",
                    " Digesting Oneself and Digesting Microbes:<br>Autophagy as a Host Response to Viral Infection",
                    " Antiviral Activity of Novel Quinoline<br>Derivatives against Dengue Virus Serotype 2",
                    " The ER in Replication of Positive-Strand RNA<br>Viruses",
                    " New-onset atrial fibrillation can be falsely<br>associated with increased length of stay in ICU due to<br>immortal time bias",
                    " Intestinal Transplantation in Children: A<br>Review of Immunotherapy Regimens",
                    " Transmission parameters of the A/H1N1 (2009)<br>influenza virus pandemic: a review",
                    " A follow-up of Beagle dogs intradermally<br>infected with Leishmania chagasi in the presence or<br>absence of sand fly saliva",
                    " 1-Year Pulmonary Function and Health Status in<br>Survivors of Severe Acute Respiratory Syndrome",
                    " A Modified SIR Model for the COVID-19 Contagion<br>in Italy",
                    " Genetic Variation and Population<br>Differentiation in a Medical Herb Houttuynia cordata in China<br>Revealed by Inter-Simple Sequence Repeats (ISSRs)",
                    " The trafficking of natural killer cells",
                    " COVID-19 Pandemic Prediction for Hungary; a<br>Hybrid Machine Learning Approach",
                    " Challenges in the interpretation and<br>application of typical imaging features of COVID-19",
                    " Genome Sequences of Porcine Epidemic Diarrhea<br>Virus: In Vivo and In Vitro Phenotypes",
                    " Midwives in a pandemic: A call for solidarity<br>and compassion",
                    " VIRAL ETIOLOGY AND OUTCOME OF SEVERE LOWER<br>RESPIRATORY TRACT INFECTIONS AMONG CRITICALLY ILL<br>CHILDREN ADMITTED TO THE PICU",
                    " Prone to survive and the priority rule in<br>science",
                    " Interpatient mutational spectrum of human<br>coronavirus‐OC43 revealed by illumina sequencing",
                    " Emerging Viruses: Coming in on a Wrinkled Wing<br>and a Prayer",
                    " Studying Evolutionary Adaptation of MERS-CoV",
                    " Haemorrhagic pneumonia in sled dogs caused by<br>Streptococcus equi subsp. zooepidemicus - one fatality and<br>two full recoveries: a case report",
                    " China's fight against COVID-19: What we have<br>done and what we should do next?",
                    " A global bibliometric analysis of<br>Plesiomonas-related research (1990 – 2017)",
                    " Enhancing preparedness for tackling new<br>epidemic threats",
                    " Application of Molecular Diagnostic<br>Techniques for Viral Testing",
                    " A sensitive radioimmunoassay for the<br>determination of antibodies to mouse hepatitis virus",
                    " Establishment and Clinical Applications of a<br>Portable System for Capturing Influenza Viruses<br>Released through Coughing",
                    " Evaluation of a French ELISA for the detection<br>of Salmonella Enteritidis and Salmonella<br>Typhimurium in flocks of laying and breeding hens",
                    " Diversity of upper respiratory tract<br>infections and prevalence of Streptococcus pneumoniae<br>colonization among patients with fever and flu-like<br>symptoms",
                    " Errors, Uncertainty, and Ethical Issues",
                    " A deadly spillover: SARS-CoV-2 outbreak",
                    " Virulence of current German PEDV strains in<br>suckling pigs and investigation of protective effects<br>of maternally derived antibodies",
                    " Wind tunnel tests of inter-flat pollutant<br>transmission characteristics in a rectangular<br>multi-storey residential building, part A: Effect of wind<br>direction",
                    " Enhancing immunity in viral infections, with<br>special emphasis on COVID-19: A review",
                    " High Prevalence of Concurrent<br>Gastrointestinal Manifestations in Patients with SARS-CoV-2:<br>Early Experience from California",
                    " Arterial hypertension and risk of death in<br>patients with COVID-19 infection: systematic review<br>and meta-analysis",
                    " CD8+ T-Cell Priming During a Central Nervous<br>System Infection with Mouse Hepatitis Virus",
                    " Public health and medical care for the world's<br>factory: China's Pearl River Delta Region",
                    " Induction of immature dendritic cell<br>apoptosis by foot and mouth disease virus is an integrin<br>receptor mediated event before viral infection",
                    " Trends in global warming and evolution of<br>matrix protein 2 family from influenza A virus",
                    " Genetic characterization of a novel<br>picornavirus in Algerian bats: co-evolution analysis of<br>bat-related picornaviruses",
                    " Crisis communication in context: Cultural and<br>political influences underpinning Chinese public<br>relations practice",
                    " Management-supportive measures for managers<br>of healthcare organizations during the COVID-19<br>epidemic",
                    " Exploitation of viral properties for<br>intracellular delivery",
                    " Chapter 17 Family Coronaviridae",
                    " Novel Pharmacologic Approaches for the<br>Treatment of ARDS",
                    " Vaccinia virus F16 protein, a predicted<br>catalytically inactive member of the prokaryotic serine<br>recombinase superfamily, is targeted to nucleoli",
                    " Peptide Vaccine: Progress and Challenges",
                    " Exosomes Derived From Septic Mouse Serum<br>Modulate Immune Responses via Exosome-Associated<br>Cytokines",
                    " The neck-region polymorphism of DC-SIGNR in<br>peri-centenarian from Han Chinese Population",
                    " Norwalk-like calicivirus genes in farm<br>animals.",
                    " Different Types of Door-Opening Motions as<br>Contributing Factors to Containment Failures in Hospital<br>Isolation Rooms",
                    " The Emerging Pandemic of Coronavirus: The<br>Urgent Need for Public Health Leadership",
                    " Facile synthesis of novel benzotriazole<br>derivatives and their antibacterial activities",
                    " In reply: Spinal anesthesia for Cesarean<br>delivery in women with COVID-19 infection: questions<br>regarding the cause of hypotension",
                    " A protocol for adding knowledge to Wikidata, a<br>case report",
                    " Chapter 2 Molecular Basis of Genetic Variation<br>of Viruses Error-Prone Replication",
                    " AVEPA Valencia 1991",
                    " Safety and immunogenicity of mammalian cell<br>derived and Modified Vaccinia Ankara vectored African<br>swine fever subunit antigens in swine",
                    " A phased lift of control: a practical strategy<br>to achieve herd immunity against Covid-19 at the<br>country level",
                    " The potential impact of the Covid-19 pandemic<br>on occupational status, work from home, and<br>occupational mobility",
                    " Treatment of sepsis in an intensive care unit",
                    " Infection, immunity and the neuroendocrine<br>response",
                    " Moloney leukemia virus-induced cell surface<br>antigen mimicry by monoclonal antibodies",
                    " Coronavirus infects and causes demyelination<br>in primate central nervous system",
                    " A genetic analysis identifies a haplotype at<br>adiponectin locus: Association with obesity and type 2<br>diabetes",
                    " Clinical features of Chlamydia pneumoniae<br>acute respiratory infection",
                    " An Ontology for Collaborative Decision Making",
                    " Demographic and Clinical Characteristics of<br>the Severe Covid-19 Infections: First Report from<br>Mashhad University of Medical Sciences, Iran",
                    " Investigation of C-terminal domain of SARS<br>nucleocapsid protein–Duplex DNA interaction using<br>transistors and binding-site models",
                    " Mycobacterial Sepsis and Multiorgan Failure<br>Syndrome",
                    " Induction and control of the type I interferon<br>pathway by Bluetongue virus",
                    " Identification of a novel canine parvovirus<br>type 2c in Taiwan",
                    " Triage",
                    " Structural probing and mutagenic analysis of<br>the stem-loop required for Escherichia coli dnaX<br>ribosomal frameshifting: programmed efficiency of 50% 1<br>1 Edited By D. E. Draper",
                    " Nutrition therapy in critical illness: a<br>review of the literature for clinicians",
                    " Potential impact of seasonal forcing on a<br>SARS-CoV-2 pandemic",
                    " Establishment of different plasmid<br>only-based reverse genetics systems for the recovery of<br>African horse sickness virus",
                    " Resilient SARS-CoV-2 diagnostics workflows<br>including viral heat inactivation",
                    " Pneumocystis carinii in Germ-Free Rats",
                    " Aberrant remyelination of axons after heat<br>injury in the dorsal funiculus of rat spinal cord",
                    " Decrease in acute coronary syndrome<br>presentations during the COVID19 pandemic in upstate New York",
                    " ViralMSA: Massively scalable<br>reference-guided multiple sequence alignment of viral genomes",
                    " A novel conserved family of Macro-like<br>domains—putative new players in ADP-ribosylation signaling",
                    " Herbal drug BNO 1016 is safe and effective in the<br>treatment of acute viral rhinosinusitis",
                    " Ebola virus is unlikely to become endemic in<br>West Africa",
                    " Egr-1 regulates RTA transcription through a<br>cooperative involvement of transcriptional regulators",
                    " Brainstem dysfunction in critically ill<br>patients",
                    " Interferon Lambda Genetics and Biology in<br>Regulation of Viral Control",
                    " Simple rapid method of rumen cannulation",
                    " Phylogenetic history demonstrates two<br>different lineages of dengue type 1 virus in Colombia",
                    " Arrhythmic profile and 24-hour QT interval<br>variability in COVID-19 patients treated with<br>Hydroxychloroquine and azithromycin",
                    " (+)-Catechin inhibition of transmissible<br>gastroenteritis coronavirus in swine testicular cells is<br>involved its antioxidation",
                    " “Nature Hath Fram’d Strange Fellows in Her<br>Time”",
                    " Clinical and microbiological effect of pulsed<br>xenon ultraviolet disinfection to reduce<br>multidrug-resistant organisms in the intensive care unit in a<br>Japanese hospital: a before-after study",
                    " Benefits and drawbacks of molecular<br>techniques for diagnosis of viral respiratory<br>infections. Experience with two multiplex PCR assays",
                    " In-Depth Analysis of the Antibody Response of<br>Individuals Exposed to Primary Dengue Virus Infection",
                    " Lipid-lowering therapy and<br>renin-angiotensin-aldosterone system inhibitors in the era of the COVID-19<br>pandemic",
                    " Quercetin 7-rhamnoside reduces porcine<br>epidemic diarrhea virus replication via independent<br>pathway of viral induced reactive oxygen species",
                    " Moving Forward: Recent Developments for the<br>Ferret Biomedical Research Model",
                    " Pneumonia Awareness Year, 2004: Scientific<br>Impact Through Publications in Archivos de<br>Bronconeumología",
                    " Gene optimization leads to robust expression<br>of human respiratory syncytial virus<br>nucleoprotein and phosphoprotein in human cells and<br>induction of humoral immunity in mice",
                    " German recommendations for critically ill<br>patients with COVID‑19",
                    " The Malabsorption Syndrome and Its Causes and<br>Consequences",
                    " Epitope-Based Peptide Vaccine against<br>Glycoprotein G of Nipah Henipavirus Using<br>Immunoinformatics Approaches",
                    " Do or die—Strategic decision-making<br>following a shock event",
                    " Survey on the Likely Behavioural Changes of the<br>General Public in Four European Countries During the<br>2009/2010 Pandemic",
                    " Hydrocephalus in Animals",
                    " Anti-Hemagglutinin Antibody Derived Lead<br>Peptides for Inhibitors of Influenza Virus Binding",
                    " A novel auto-cleavage assay for studying<br>mutational effects on the active site of severe acute<br>respiratory syndrome coronavirus 3C-like protease",
                    " The Framework for the Prediction of the<br>Critical Turning Period for Outbreak of COVID-19 Spread<br>in China based on the iSEIR Model",
                    " Population age structure only partially<br>explains the large number of COVID-19 deaths at the<br>oldest ages",
                    " Oral Presentations_Tuesday",
                    " Sorafenib induces autophagy and suppresses<br>activation of human macrophage",
                    " High-Frequency Oscillatory Ventilation for<br>Adult Patients With ARDS",
                    " SARS-CoV-2 seroprevalence and neutralizing<br>activity in donor and patient blood from the San<br>Francisco Bay Area",
                    " Advanced Diagnostic Approaches and Current<br>Management of Proventricular Dilatation Disease",
                    " Biomarkers of Pulmonary Diseases",
                    " PriSeT: Efficient De Novo Primer Discovery",
                    " Spread of Novel Coronavirus by Returning<br>Pilgrims from Iran to Pakistan",
                    " The interaction of the SARS coronavirus<br>non-structural protein 10 with the cellular oxido-reductase<br>system causes an extensive cytopathic effect",
                    " Crowd Control in Plazas Constrained to Social<br>Distancing",
                    " Antiviral IFN-γ responses of monocytes at<br>birth predict respiratory tract illness in the first<br>year of life",
                    " Current applications and future trends of<br>molecular diagnostics in clinical bacteriology",
                    " Propagation of respiratory viruses in human<br>airway epithelia reveals persistent virus-specific<br>signatures",
                    " Bacterial–viral load and the immune response<br>in stable and exacerbated COPD: significance and<br>therapeutic prospects",
                    " Identification of Plasmodium falciparum<br>proteoforms from liver stage models",
                    " Retardation of cell growth by avian reovirus<br>p17 through the activation of p53 pathway",
                    " Immunohistochemical Staining for Detection<br>of Porcine Epidemic Diarrhea Virus in Tissues",
                    " Clinical observation and management of<br>COVID-19 patients",
                    " Geriatric Medicine in Italy in the Time of<br>Covid-19",
                    " Development and evaluation of a rapid<br>detection assay for severe fever with thrombocytopenia<br>syndrome virus based on reverse-transcription<br>recombinase polymerase amplification",
                    " Pandemics and Their Impact on Medical<br>Training: Lessons From Singapore",
                    " Metagenomics reshapes the concepts of RNA<br>virus evolution by revealing extensive horizontal<br>virus transfer",
                    " Accuracy of ventilator-associated events for<br>the diagnosis of ventilator-associated lower<br>respiratory tract infections",
                    " The Ubiquitin Proteasome System Plays a Role in<br>Venezuelan Equine Encephalitis Virus Infection",
                    " Cisplatin Derivatives as Antiviral Agents",
                    " Data Protection and Research: A vital<br>challenge in the era of Covid-19 Pandemic",
                    " Association of Cardiovascular<br>Manifestations with In-hospital Outcomes in Patients with<br>COVID-19: A Hospital Staff Data",
                    " Emerging Diseases: A Global and Biological<br>Perspective",
                    " Immortalization and Characterization of<br>Porcine Macrophages That Had Been Transduced with<br>Lentiviral Vectors Encoding the SV40 Large T Antigen and<br>Porcine Telomerase Reverse Transcriptase",
                    " MyD88 Is Required for Protection from Lethal<br>Infection with a Mouse-Adapted SARS-CoV",
                    " Implications of Nonlinearity, Confounding,<br>and Interactions for Estimating Exposure<br>Concentration-Response Functions in Quantitative Risk Analysis",
                    " A Vesicular Stomatitis Virus Replicon-Based<br>Bioassay for the Rapid and Sensitive Determination of<br>Multi-Species Type I Interferon",
                    " The output of the tRNA modification pathways<br>controlled by the Escherichia coli MnmEG and MnmC enzymes<br>depends on the growth conditions and the tRNA species",
                    " Management of Ventilator-associated<br>Pneumonia",
                    " Identification of new participants in the<br>rainbow trout (Oncorhynchus mykiss) oocyte<br>maturation and ovulation processes using cDNA<br>microarrays",
                    " Conflicts of Interest during Contact<br>Investigations: A Game-Theoretic Analysis",
                    " Challenges in modelling complexity of fungal<br>entomopathogens in semi-natural populations of insects",
                    " Zika (PRVABC59) Infection Is Associated with T<br>cell Infiltration and Neurodegeneration in CNS of<br>Immunocompetent Neonatal C57Bl/6 Mice",
                    " Molecular Phylogeny of Hantaviruses Harbored<br>by Insectivorous Bats in Côte d’Ivoire and<br>Vietnam",
                    " Neutropenic Fever in the Intensive Care Unit",
                    " Climate impact on spreading of airborne<br>infectious diseases: Complex network based modeling of<br>climate influences on influenza like illnesses",
                    " Experience with ARDS caused by tuberculosis in<br>a respiratory intensive care unit",
                    " Impact of the topology of metapopulations on<br>the resurgence of epidemics rendered by a new<br>multiscale hybrid modeling approach",
                    " Secretory phospholipase A2 pathway in various<br>types of lung injury in neonates and infants: a<br>multicentre translational study",
                    " Phage Display: A Powerful Technology for the<br>Generation of High Specificity Affinity Reagents from<br>Alternative Immune Sources",
                    " Human Mobility Restrictions and the Spread of<br>the Novel Coronavirus (2019-nCoV) in China",
                    " Comparison of the immune response to<br>vaccination with pigeon circovirus recombinant capsid<br>protein (PiCV rCP) in pigeons uninfected and<br>subclinically infected with PiCV",
                    " Increased Viral Titers and Subtle Changes in<br>Plaque Morphology Upon Passage of SARS-CoV in Cells<br>from Different Species",
                    " GenomeFingerprinter: The Genome Fingerprint<br>and the Universal Genome Fingerprint Analysis for<br>Systematic Comparative Genomics",
                    " The essential role of<br>fructose-1,6-bisphosphatase 2 enzyme in thermal homeostasis upon cold<br>stress",
                    " Impact of Ebola experiences and risk<br>perceptions on mental health in Sierra Leone, July 2015",
                    " SPSTracker: Sub-Peak Suppression of Response<br>Map for Robust Object Tracking",
                    " Antiviral activity of a Bacillus sp. P34<br>peptide against pathogenic viruses of domestic<br>animals",
                    " Utility of adding Pneumocystis jirovecii DNA<br>detection in nasopharyngeal aspirates in<br>immunocompromised adult patients with febrile pneumonia",
                    " Identification and characterisation of the<br>CD40-ligand of Sigmodon hispidus",
                    " Molecular characterization of<br>Cryptosporidium parvum from two different Japanese<br>prefectures, Okinawa and Hokkaido",
                    " Antibody-mediated protection against<br>MERS-CoV in the murine model",
                    " Paediatric pandemic planning: children’s<br>perspectives and recommendations",
                    " Burden, Etiology, and Risk Factors of<br>Respiratory Virus Infections Among Symptomatic Preterm<br>Infants in the Tropics: A Retrospective Single-Center<br>Cohort Study",
                    " The Genus Alnus, A Comprehensive Outline of Its<br>Chemical Constituents and Biological Activities",
                    " Human Metapneumovirus–Associated Lower<br>Respiratory Tract Infections among Hospitalized Human<br>Immunodeficiency Virus Type 1 (HIV-1)–Infected and<br>HIV-1–Uninfected African Infants",
                    " A One Health Approach to Wildlife and Food<br>Safety",
                    " On-site measurement of tracer gas<br>transmission between horizontal adjacent flats in<br>residential building and cross-infection risk assessment",
                    " Blockade of the C5a–C5aR axis alleviates lung<br>damage in hDPP4-transgenic mice infected with<br>MERS-CoV",
                    " Tracking sources of Staphylococcus aureus<br>hand contamination in food handlers by spa typing",
                    " Becoming bovine: Mechanics and metamorphosis<br>in Hokkaido's animal-human-machine",
                    " Pathophysiological Characteristics and<br>Therapeutic Approaches for Pulmonary Injury and<br>Cardiovascular Complications of Coronavirus Disease 2019",
                    " Biological Agents and Terror Medicine",
                    " Emerging biomedical applications of<br>synthetic biology",
                    " Expression and purification of coronavirus<br>envelope proteins using a modified β-barrel construct",
                    " Epidemiology",
                    " Thin-section Computed Tomography Detects<br>Long-term Pulmonary Sequelae 3 Years after Novel<br>Influenza A Virus-associated Pneumonia",
                    " DNA Vaccines: Developing New Strategies<br>against Cancer",
                    " Market clustering and performance of U.S. OD<br>markets",
                    " Public perceptions of non-pharmaceutical<br>interventions for reducing transmission of respiratory<br>infection: systematic review and synthesis of<br>qualitative studies",
                    " Incidence and clinical characteristics of<br>posttransplant lymphoproliferative disorders: report from a<br>single center",
                    " Mental Health Services in Lombardy during<br>COVID-19 outbreak",
                    " Vagueness and Costs of the Pause on<br>Gain-of-Function (GOF) Experiments on Pathogens with Pandemic<br>Potential, Including Influenza Virus",
                    " Cis-acting Regulatory Elements in the Potato<br>Virus X 3′ Non-translated Region Differentially<br>Affect Minus-strand and Plus-strand RNA<br>Accumulation",
                    " Respiratory Virus Infections in<br>Hematopoietic Cell Transplant Recipients",
                    " Psychiatric Findings in Suspected and<br>Confirmed Middle East Respiratory Syndrome Patients<br>Quarantined in Hospital: A Retrospective Chart Analysis",
                    " CD11b immunophenotyping identifies<br>inflammatory profiles in the mouse and human lungs",
                    " Evolutionary Analysis of the VP1 and<br>RNA-Dependent RNA Polymerase Regions of Human Norovirus<br>GII.P17-GII.17 in 2013–2017",
                    " Travel Medicine Online International sources<br>of travel medicine information on the Internet",
                    " Efficient Reverse Genetic Systems for Rapid<br>Genetic Manipulation of Emergent and Preemergent<br>Infectious Coronaviruses",
                    " Allografts in Anterior Cruciate Ligament<br>Reconstruction",
                    " An untreatable dyspnoea: more defendants<br>under investigation",
                    " Regulation of the apoptosis-inducing kinase<br>DRAK2 by cyclooxygenase-2 in colorectal cancer",
                    " Bioactive compounds with possible inhibitory<br>activity of Angiotensin-Converting Enzyme-II; a gate<br>to manage and prevent COVID-19",
                    " The accuracy of nurses' estimates of their<br>absenteeism",
                    " Esophageal, Gastric, and Intestinal<br>Disorders of Young Dogs and Cats",
                    " Identification of Protein Receptors for<br>Coronaviruses by Mass Spectrometry",
                    " IFNL4 ss469415590 Variant Is Associated with<br>Treatment Response in Japanese HCV Genotype 1 Infected<br>Individuals Treated with IFN-Including Regimens",
                    " Molecular-based isothermal tests for field<br>diagnosis of malaria and their potential contribution to<br>malaria elimination",
                    " Cell‐Based Hepatitis C Virus Infection<br>Fluorescence Resonance Energy Transfer (FRET) Assay for<br>Antiviral Compound Screening",
                    " Intermittent yet coordinated regional<br>strategies can alleviate the COVID-19 epidemic: a network<br>model of the Italian case",
                    " Rapid Identification of Seven Waterborne<br>Exophiala Species by RCA DNA Padlock Probes",
                    " MONDAY: POSTERS",
                    " Clinical Issues—January 2012",
                    " Plasmodium vivax Antigen Discovery Based on<br>Alpha-Helical Coiled Coil Protein Motif",
                    " Evidence for probable aerosol transmission of<br>SARS-CoV-2 in a poorly ventilated restaurant",
                    " An Activated GOPS‐poly‐L‐Lysine‐ Coated<br>Glass Surface for the Immobilization of 60mer<br>Oligonucleotides",
                    " Domain Adaptation via Context Prediction for<br>Engineering Diagram Search",
                    " Effectiveness of an education health<br>programme about Middle East respiratory syndrome<br>coronavirus tested during travel consultations",
                    " Temporal profiles of viral load in posterior<br>oropharyngeal saliva samples and serum antibody responses<br>during infection by SARS-CoV-2: an observational<br>cohort study",
                    " Viral respiratory infections in elderly<br>patients and patients with chronic obstructive<br>pulmonary disease",
                    " PWP2, a member of the WD-repeat family of<br>proteins, is an essentialSaccharomyces cerevisiae gene<br>involved in cell separation",
                    " Immunogenicity of eGFP-Marked Recombinant<br>Lactobacillus casei against Transmissible Gastroenteritis<br>Virus and Porcine Epidemic Diarrhea Virus",
                    " Systematic investigations of COVID-19 in 283<br>cancer patients",
                    " Development of qPCR platform with probes for<br>quantifying prevalent and biomedically relevant human gut<br>microbial taxa",
                    " Comparative Evaluation of Three<br>Preprocessing Methods for Extraction and Detection of<br>Influenza A Virus Nucleic Acids from Sputum",
                    " Informed Consent for Surgery During COVID-19",
                    " Electronic and magnetic properties of diiron<br>in extended carbon networks Fe2C6 and Fe2C12 from<br>first principles",
                    " Brain Microbial Populations in HIV/AIDS:<br>α-Proteobacteria Predominate Independent of Host Immune Status",
                    " Household transmission of respiratory<br>viruses – assessment of viral, individual and<br>household characteristics in a population study of<br>healthy Australian adults",
                    " Rodent and Germplasm Trafficking: Risks of<br>Microbial Contamination in a High-Tech Biomedical World",
                    " Oral application of cytokines",
                    " Chikungunya disease and chloroquine<br>treatment",
                    " Legal and Moral Reflections on Modern<br>Biotechnology in Use & Misuse",
                    " Severity of Respiratory Syncytial Virus Lower<br>Respiratory Tract Infection With Viral Coinfection in<br>HIV-Uninfected Children",
                    " An Approach to a Pulmonary Infiltrate in Solid<br>Organ Transplant Recipients",
                    " Expression of Recombinant Antibodies",
                    " SARS Risk Perceptions in Healthcare Workers,<br>Japan",
                    " E-cigarette, or Vaping, Product<br>Use-associated Lung Injury (EVALI): Acute Lung Illness within<br>Hours of Switching from Traditional to E-cigarettes",
                    " Porcine aminopeptidase N mediated polarized<br>infection by porcine epidemic diarrhea virus in target<br>cells",
                    " Suppression and Mitigation Strategies for<br>Control of COVID-19 in New Zealand",
                    " COVID-19 in Uganda: Predicting the impact of<br>the disease and public health response on disease<br>burden",
                    " Influence of media composition on recombinant<br>monoclonal IgA1 glycosylation analysed by lectin-based<br>protein microarray and MALDI-MS",
                    " Proteomic analysis of Pteropus alecto kidney<br>cells in response to the viral mimic, Poly I:C",
                    " SPI-1 is a missing host-range factor required<br>for replication of the attenuated modified<br>vaccinia Ankara (MVA) vaccine vector in human cells",
                    " Viral replicons as valuable tools for drug<br>discovery",
                    " Evaluation of indirect immunofluorescence<br>antibody test and enzyme-linked immunosorbent assay<br>for the diagnosis of infection by Leishmania<br>infantum in clinically normal and sick cats",
                    " 8th Course of the European School of<br>Neuroimmunology",
                    " Triggering through CD16 or phorbol esters<br>enhances adhesion of NK cells to laminin via very late<br>antigen 6",
                    " The effectiveness of non-pharmaceutical<br>interventions in containing epidemics: a rapid review of the<br>literature and quantitative assessment",
                    " Novel Coronavirus (2019-nCoV) in Disguise",
                    " Development of a Coxsackievirus A16<br>neutralization assay based on pseudoviruses for measurement<br>of neutralizing antibody titer in human serum",
                    " New ethnicities online: reflexive<br>racialisation and the internet",
                    " Association of Cardiovascular Disease with<br>Coronavirus Disease 2019 (COVID-19) Severity: A<br>Meta-Analysis",
                    " Network perturbation analysis of gene<br>transcriptional profiles reveals protein targets and<br>mechanism of action of drugs and influenza A viral<br>infection",
                    " Preventing the next 'SARS' - European<br>healthcare workers' attitudes towards monitoring their<br>health for the surveillance of newly emerging<br>infections: qualitative study",
                    " Community Under Stress: Trust, Reciprocity,<br>and Community Collective Efficacy During SARS<br>Outbreak",
                    " Improving emergency preparedness capability<br>of rural public health personnel in China",
                    " Silencing the cytokine storm: the use of<br>intravenous anakinra in haemophagocytic<br>lymphohistiocytosis or macrophage activation syndrome",
                    " Does lopinavir really inhibit SARS-CoV-2?",
                    " Sculpting the immune response to infection",
                    " BMT Settings, Infection and Infection Control",
                    " The Influence of COVID-19 on Air Quality in<br>India: A Boon or Inutile",
                    " Modified vaccinia virus Ankara as antigen<br>delivery system: how can we best use its potential?",
                    " Detection and differentiation of field and<br>vaccine strains of canine distemper virus using<br>reverse transcription followed by nested real time PCR<br>(RT-nqPCR) and RFLP analysis",
                    " SARS-Coronavirus ancestor’s foot-prints in<br>South-East Asian bat colonies and the refuge theory",
                    " Recognition of potential Covid-19 drug<br>treatments through the study of existing protein-drug and<br>protein-protein structures: an analysis of kinetically active<br>residues",
                    " New nsp8 isoform suggests mechanism for tuning<br>viral RNA synthesis",
                    " Protecting health care workers from SARS and<br>other respiratory pathogens: Organizational and<br>individual factors that affect adherence to infection<br>control guidelines",
                    " The Vascular Surgery Covid-19 Collaborative<br>(VASCC)",
                    " A one-year hospital-based prospective<br>CVOID-19 open-cohort in the Eastern Mediterranean<br>region: The Khorshid COVID Cohort (KCC) study",
                    " Enhanced nano-aerosol loading performance of<br>multilayer PVDF nanofiber electret filters",
                    " SARS: ventilatory and intensive care",
                    " An unexpected and suspended time",
                    " Effect of proactive infection control<br>measures on benchmarked rate of hospital outbreaks: An<br>analysis of public hospitals in Hong Kong over 5 years",
                    " Risk analysis for plant-made vaccines",
                    " Forecasting respiratory infectious<br>outbreaks using ED-based syndromic surveillance for<br>febrile ED visits in a Metropolitan City",
                    " Expression patterns in feline blood and<br>tissues of α(1)-acid glycoprotein (AGP) and of an<br>AGP-related protein (AGPrP)",
                    " Turkey Coronavirus Non-Structure Protein<br>NSP15-An Endoribonuclease",
                    " Health care and mental health challenges for<br>transgender individuals during the COVID-19 pandemic",
                    " Prenatal Care Redesign: Creating Flexible<br>Maternity Care Models Through Virtual Care",
                    " Eukaryotic Initiation Factor 2α - a Downstream<br>Effector of Mammalian Target of Rapamycin - Modulates<br>DNA Repair and Cancer Response to Treatment",
                    " The “City Operator” and the Tianyi Square<br>Redevelopment Project",
                    " Activity-based protein profiling of<br>host–virus interactions",
                    " Biogeography of diseases: a framework for<br>analysis",
                    " Modelling microbial infection to address<br>global health challenges",
                    " How and why rheumatologists are relevant to<br>COVID-19?",
                    " C-X-C Motif Chemokine 10 Contributes to the<br>Development of Neuropathic Pain by Increasing the<br>Permeability of the Blood–Spinal Cord Barrier",
                    " Repurposing of Miglustat to inhibit the<br>coronavirus Severe Acquired Respiratory Syndrome<br>SARS-CoV-2",
                    " Effector biology during biotrophic invasion<br>of plant cells",
                    " Bereavement support on the frontline of<br>COVID-19: Recommendations for hospital clinicians",
                    " Viral metagenomics",
                    " Myocardial injury is associated with<br>in-hospital mortality of confirmed or suspected COVID-19<br>in Wuhan, China: A single center retrospective<br>cohort study",
                    " COVID-19 and diabetes: The why, the what and the<br>how",
                    " Porcine Innate and Adaptative Immune<br>Responses to Influenza and Coronavirus Infections",
                    " COVID-19 in forensic medicine unit personnel:<br>Observation from Thailand",
                    " AMP-Activated Kinase Restricts Rift Valley<br>Fever Virus Infection by Inhibiting Fatty Acid<br>Synthesis",
                    " Intestinal transplantation in children:<br>current status",
                    " Neurosurgical training during the COVID-19<br>pandemic: a British perspective",
                    " The Impact of Social Distancing on TheCourse of<br>The Covid-19 Pandemic in FourEuropean Countries",
                    " International Conferences on Environmental<br>Mutagens in Human Populations—Opportunities,<br>Accomplishments and Challenges",
                    " Data-driven modeling reveals a universal<br>dynamic underlying the COVID-19 pandemic under social<br>distancing",
                    " Gay Saunas and the Risks of HIV and Syphilis<br>Transmissions in China—Results of a Meta‐Analysis",
                    " Treatment of Crimean-Congo Hemorrhagic Fever",
                    " Contact Heterogeneity and Phylodynamics: How<br>Contact Networks Shape Parasite Evolutionary Trees",
                    " Composition of human-specific slow codons and<br>slow di-codons in SARS-CoV and 2019-nCoV are lower<br>than other coronaviruses suggesting a faster<br>protein synthesis rate of SARS-CoV and 2019-nCoV",
                    " Middle East Respiratory Syndrome Coronavirus<br>Transmission in Extended Family, Saudi Arabia, 2014",
                    " Rapid Detection of Avian Infectious<br>Bronchitis Virus by Reverse Transcriptase-Loop Mediated<br>Isothermal Amplification",
                    " Response to Huang et al. “Herpesviridae<br>reactivation for poor outcome in ARDS patients with ECMO:<br>criminal or witness?”",
                    " TGEV infection up-regulates FcRn expression<br>via activation of NF-κB signaling",
                    " Anti-infective monoclonal antibodies:<br>perils and promise of development",
                    " Multi-level transcriptome sequencing<br>identifies COL1A1 as a candidate marker in human heart<br>failure progression",
                    " Estimation of Transmission Potential and<br>Severity of COVID-19 in Romania and Pakistan",
                    " Granulomatosis with polyangiitis: clinical<br>course and outcome of 60 patients from a single center<br>in South India",
                    " Renin-angiotensin-aldosterone system and<br>COVID-19 infection",
                    " DNA vaccination of poultry: The current status<br>in 2015",
                    " Why diagnose respiratory viral infection?",
                    " Isolation and Identification of a Natural<br>Reassortant Mammalian Orthoreovirus from Least Horseshoe<br>Bat in China",
                    " Novel nano therapeutic materials for the<br>effective treatment of rheumatoid arthritis-recent<br>insights",
                    " Authors' Reply",
                    " Deep learning-based multi-view fusion model<br>for screening 2019 novel coronavirus pneumonia: a<br>multicentre study",
                    " Spotted Fever Rickettsiosis in a Wildlife<br>Researcher in Sabah, Malaysia: A Case Study",
                    " Placing Resources: Junior Mining Companies<br>and the Locus of Mineral Potential",
                    " Managing public health crises: the role of<br>models in pandemic preparedness",
                    " Artificial intelligence for rapid<br>identification of the coronavirus disease 2019 (COVID-19)",
                    " Diagnosis of human coronavirus infection by<br>immunofluorescence: Method and application to respiratory disease<br>in hospitalized children",
                    " Communciation channels to help build an<br>international community of education and practice",
                    " Estimates and determinants of economic<br>impacts from influenza‐like illnesses caused by<br>respiratory viruses in Australian children attending<br>childcare: a cohort study",
                    " Dynamics of pulmonary endothelial barrier<br>function in acute inflammation: mechanisms and<br>therapeutic perspectives",
                    " Structural models of the membrane anchors of<br>envelope glycoproteins E1 and E2 from pestiviruses",
                    " Metabolic engineering of Escherichia coli<br>into a versatile glycosylation platform:<br>production of bio-active quercetin glycosides",
                    " Epidemiology of Acute Respiratory Failure in<br>Patients with HM (ICU Only)",
                    " Mint3/Apba3 depletion ameliorates severe<br>murine influenza pneumonia and macrophage cytokine<br>production in response to the influenza virus",
                    " Coronavirus JHM-Induced Demyelinating<br>Encephalomyelitis in Rats: Influence of Immunity on the Course of<br>Disease",
                    " Middle East respiratory syndrome coronavirus<br>on inanimate surfaces: A risk for health care<br>transmission",
                    " Anti-high mobility group box-1 monoclonal<br>antibody treatment provides protection against<br>influenza A virus (H1N1)-induced pneumonia in mice",
                    " Molecular and functional insights into a novel<br>teleost malectin from big-belly seahorse Hippocampus<br>abdominalis",
                    " Organ distribution of severe acute<br>respiratory syndrome (SARS) associated coronavirus<br>(SARS‐CoV) in SARS patients: implications for<br>pathogenesis and virus transmission pathways",
                    " Pathogenesis of Murine Coronavirus in the<br>Central Nervous System",
                    " Impact of multiplex molecular assay<br>turn-around-time on antibiotic utilization and clinical<br>management of hospitalized children with acute<br>respiratory tract infections",
                    " Geometrically Closed Positive Varieties of<br>Star-Free Languages",
                    " Genome-wide expression profiling shows<br>transcriptional reprogramming in Fusarium graminearum by<br>Fusarium graminearum virus 1-DK21 infection",
                    " Is the Mortality Trend of Ischemic Heart<br>Disease by the GBD2013 Study in China Real?",
                    " Mumps Virus: Modification of the<br>Identify-Isolate-Inform Tool for Frontline Healthcare Providers",
                    " Chapter 5 Future prospects",
                    " β(2)-Adrenergic receptor promoter haplotype<br>influences the severity of acute viral respiratory tract<br>infection during infancy: a prospective cohort study",
                    " Peptide Mimicrying Between SARS Coronavirus<br>Spike Protein and Human Proteins Reacts with SARS<br>Patient Serum",
                    " Detection of Plant DNA in the Bronchoalveolar<br>Lavage of Patients with Ventilator-Associated<br>Pneumonia",
                    " Low C-reactive protein values at admission<br>predict mortality in patients with severe<br>community-acquired pneumonia caused by Streptococcus pneumoniae<br>that require intensive care management",
                    " Aerosol Barrier Hood for Use in the Management<br>of Critically Ill Adults With COVID-19",
                    " From genotype to phenotype: can systems<br>biology be used to predict Staphylococcus aureus<br>virulence?",
                    " Momentum managing epidemic spread and Bessel<br>functions",
                    " Highly Attenuated Vaccinia Virus Dis as a<br>Potential Sars Vaccine",
                    " Mobile X-rays are highly valuable for<br>critically ill COVID patients",
                    " Pseudotyped Vesicular Stomatitis Virus for<br>Analysis of Virus Entry Mediated by SARS Coronavirus<br>Spike Proteins",
                    " Performance of LBSap Vaccine after<br>Intradermal Challenge with L. infantum and Saliva of Lu.<br>longipalpis: Immunogenicity and Parasitological<br>Evaluation",
                    " Anti-TGEV Miller Strain Infection Effect of<br>Lactobacillus plantarum Supernatant Based on the JAK-STAT1<br>Signaling Pathway",
                    " Improved measurement of racial/ethnic<br>disparities in COVID-19 mortality in the United States",
                    " Exacerbations Etiology and Pathophysiologic<br>Mechanisms",
                    " Do ringing numbers reflect true migratory<br>activity of nocturnal migrants?",
                    " Evaluation of clinical applicability of<br>reverse transcription-loop-mediated isothermal<br>amplification assay for detection and subtyping of Influenza<br>A viruses",
                    " Cardiac Valves: Another “Disaster-Hit Area”<br>of COVID-19 Patients?",
                    " Respiratory failure presenting in H1N1<br>influenza with Legionnaires disease: two case reports",
                    " Miller Fisher syndrome with bilateral vocal<br>cord paralysis: a case report",
                    " Detecting signals of chronic shedding to<br>explain pathogen persistence: Leptospira<br>interrogans in California sea lions",
                    " Management of Adenoviral<br>Keratoconjunctivitis: Challenges and Solutions",
                    " Covid-19 and Inequity: A comparative spatial<br>analysis of New York City and Chicago hot spots",
                    " Haploidentical Stem Cell Transplantation in<br>Children With Hematological Malignancies Using αβ(+)<br>T-Cell Receptor and CD19(+) Cell Depleted Grafts:<br>High CD56(dim)/CD56(bright) NK Cell Ratio Early<br>Following Transplantation Is Associated With Lower<br>Relapse Incidence and Better Outcome",
                    " Synonymous Codon Usage Analysis of Thirty Two<br>Mycobacteriophage Genomes",
                    " B Cell Repertoire Analysis Identifies New<br>Antigenic Domains on Glycoprotein B of Human<br>Cytomegalovirus which Are Target of Neutralizing Antibodies",
                    " Imaging of Pulmonary Infections",
                    " High detection rate of dog circovirus in<br>diarrheal dogs",
                    " COVID-19 and Tuberculosis: A mathematical<br>model based forecasting in Delhi, India",
                    " COVID-19 and the Advancement of Digital<br>Physical Therapist Practice and Telehealth",
                    " Gastroenteritis in Auckland: An aetiological<br>and clinical study",
                    " Effects of Network Structure, Competition and<br>Memory Time on Social Spreading Phenomena",
                    " The Human Cytomegalovirus DNA Polymerase<br>Processivity Factor UL44 Is Modified by SUMO in a<br>DNA-Dependent Manner",
                    " Acute Respiratory Infections in a Recently<br>Arrived Traveler to Your Part of the World*",
                    " A pilot study on the disinfection efficacy of<br>localized UV on the flushing-generated spread of<br>pathogens",
                    " Responding to priority health challenges in<br>the Arab world",
                    " COVID-19 Should be Suppressed by Mixed<br>Constraints -- from Simulations on Constrained Scale-Free<br>Networks",
                    " Molecular epidemiology and genetic variation<br>analyses of porcine circovirus type 2 isolated from<br>Yunnan Province in China from 2016-2019",
                    " Molecular epidemiology and characterization<br>of human coronavirus in Thailand, 2012–2013",
                    " Impact of a modification of the clinical<br>practice guide of the American Academy of Pediatrics in<br>the management of severe acute bronchiolitis in a<br>pediatric intensive care unit",
                    " Detection and genotyping of Korean porcine<br>rotaviruses",
                    " Emergence of Novel Coronavirus and COVID-19:<br>whether to stay or die out?",
                    " Metabolism of Glutathione S-Conjugates:<br>Multiple Pathways",
                    " Adp-Ribose-1”-Phosphatase Activities of the<br>Human Coronavirus 229E and Sars Coronavirus X<br>Domains",
                    " The Role of Repeat Chest CT Scan in the COVID-19<br>Pandemic",
                    " Seroprevalence of porcine respiratory<br>coronavirus infection in Spanish breeding sows",
                    " Acute Lung Injury: The Injured Lung<br>Endothelium, Therapeutic Strategies for Barrier<br>Protection, and Vascular Biomarkers",
                    " Feeling Like It is Time to Reopen Now? COVID-19<br>New Normal Scenarios based on Reopening Sentiment<br>Analytics",
                    " Is virus coinfection a predictor of severity in<br>children with viral respiratory infections?",
                    " Controlling the SARS-CoV-2 Spike<br>Glycoprotein Conformation",
                    " Activation of c-Jun N-terminal kinase by<br>Akabane virus is required for apoptosis",
                    " Risk of transmission of airborne infection<br>during train commute based on mathematical model",
                    " Forensic interpretation of molecular<br>variation on networks of disease transmission and<br>genetic inheritance",
                    " Enhancing the Robustness of Smartphone<br>Photoplethysmography: A Signal Quality Index Approach",
                    " Severe Acute Respiratory Syndrome and Sport:<br>Facts and Fallacies",
                    " Measuring psychological resilience to<br>disasters: are evidence-based indicators an achievable<br>goal?",
                    " Antimicrobial and antioxidant activities of<br>Cortex Magnoliae Officinalis and some other<br>medicinal plants commonly used in South-East Asia",
                    " Effects of Hand Hygiene Campaigns on Incidence<br>of Laboratory-confirmed Influenza and<br>Absenteeism in Schoolchildren, Cairo, Egypt",
                    " Ultra-High-Resolution CT Follow-Up in<br>Patients with Imported Early-Stage Coronavirus<br>Disease 2019 (COVID-19) Related Pneumonia",
                    " Evidence of nosocomial transmission of human<br>rhinovirus in a neonatal intensive care unit",
                    " Detection and molecular characterization of<br>porcine group C rotaviruses in South Korea",
                    " Rotavirus infection in adults",
                    " Detection of 2019 novel coronavirus<br>(2019-nCoV) by real-time RT-PCR",
                    " Maneuvering for advantage: the genetics of<br>mouse susceptibility to virus infection",
                    " Cerebral Venous Thrombosis: Atypical<br>Presentation of COVID-19 in the Young",
                    " COVID-19: Gastrointestinal Manifestations<br>and Potential Fecal–Oral Transmission",
                    " An in vivo cell-based assay for investigating<br>the specific interaction between the SARS-CoV<br>N-protein and its viral RNA packaging sequence",
                    " 2018 international meeting of the Global Virus<br>Network",
                    " Decline in PM2.5 Concentrations over Major<br>Cities Around the World Associated with COVID-19",
                    " A Critical Domain of Ebolavirus Envelope<br>Glycoprotein Determines Glycoform and Infectivity",
                    " Synthetic peptides coupled to the surface of<br>liposomes effectively induce SARS<br>coronavirus-specific cytotoxic T lymphocytes and viral clearance in<br>HLA-A*0201 transgenic mice",
                    " Recent advances in understanding inherited<br>deficiencies in immunity to infections",
                    " Surviving Deadly Lung Infections: Innate Host<br>Tolerance Mechanisms in the Pulmonary System",
                    " The role of ACE2 in pulmonary<br>diseases—relevance for the nephrologist",
                    " A Novel High-Throughput Vaccinia Virus<br>Neutralization Assay and Preexisting Immunity in Populations<br>from Different Geographic Regions in China",
                    " Immunohistochemical characterisation of<br>PCV2 associate lesions in lymphoid and<br>non-lymphoid tissues of pigs with natural postweaning<br>multisystemic wasting syndrome (PMWS)",
                    " Discriminating self from non-self in nucleic<br>acid sensing",
                    " Mof4-1 is an allele of the UPF1/IFS2 gene which<br>affects both mRNA turnover and -1 ribosomal<br>frameshifting efficiency.",
                    " Economic Importance",
                    " Clinical characteristics and outcomes of<br>patients with severe covid-19 with diabetes",
                    " Evaluation of a Live Attenuated Human<br>Metapneumovirus Vaccine in Adults and Children",
                    " How host genetics dictates successful viral<br>zoonosis",
                    " Microbiology of otitis media: A moving target",
                    " Association of the insulin resistance marker<br>TyG index with the severity and mortality of<br>COVID-19",
                    " No SARS-CoV-2 detected in amniotic fluid in<br>mid-pregnancy",
                    " Toward sustainable and effective control:<br>Experience of China Ebola Treatment Center in Liberia",
                    " Variation in COVID-19 Outbreaks at U.S. State<br>and County Levels",
                    " Multi-Competitive Viruses over Static and<br>Time--Varying Networks",
                    " Quiet Moment around the Campfire",
                    " The Interferon-Inducible Mouse<br>Apolipoprotein L9 and Prohibitins Cooperate to Restrict<br>Theiler’s Virus Replication",
                    " Dual Modes of Modification of Hepatitis A Virus<br>3C Protease by a Serine-derived β-Lactone:<br>Selective Crystallization and Formation of a Functional<br>Catalytic Triad in the Active Site",
                    " Cutaneous Phaeohyphomycosis Caused by<br>Exophiala attenuata in a Domestic Cat",
                    " Add on the next level—the time point of the type I<br>IFN response orchestrates the immune response",
                    " Intracerebral delivery of small interfering<br>RNAs (siRNAs) using adenoviral vector protects<br>mice against lethal peripheral rabies challenge",
                    " Gene-silencing suppressors for high-level<br>production of the HIV-1 entry inhibitor griffithsin in<br>Nicotiana benthamiana",
                    " Imaging of Coronavirus Disease 2019: A Chinese<br>Expert Consensus Statement",
                    " Proteomic analysis of purified Newcastle<br>disease virus particles",
                    " Comparison of two broadly multiplexed PCR<br>systems for viral detection in clinical respiratory<br>tract specimens from immunocompromised children",
                    " Glucocorticoids (as an Etiologic Factor)",
                    " Differences in the intestinal microbiota<br>between uninfected piglets and piglets infected with<br>porcine epidemic diarrhea virus",
                    " Serological assays for severe acute<br>respiratory syndrome coronavirus 2 (SARS-CoV-2), March<br>2020",
                    " Conclusion",
                    " Thy-1 depletion and integrin β3<br>upregulation-mediated PI3K-Akt-mTOR pathway activation inhibits<br>lung fibroblast autophagy in<br>lipopolysaccharide-induced pulmonary fibrosis",
                    " Solving the master equation for Indels",
                    " Seroepidemiological analysis of influenza<br>pandemics in Shizuoka Prefecture and all Japan",
                    " Using observational data to quantify bias of<br>traveller-derived COVID-19 prevalence estimates in Wuhan, China",
                    " From APOBEC to ZAP: Diverse mechanisms used by<br>cellular restriction factors to inhibit virus<br>infections",
                    " Bats, Civets and the Emergence of SARS",
                    " Exceptional matters",
                    " A systematic review of community-based<br>interventions for emerging zoonotic infectious diseases in<br>Southeast Asia",
                    " Molecular epidemiology of rubella viruses<br>involved in congenital rubella infections in São Paulo,<br>Brazil, between 1996 and 2009",
                    " Dissecting host cell death programs in the<br>pathogenesis of influenza",
                    " Daily Travel and Wellbeing among the Elderly",
                    " Current Situation and Perspectives of<br>Clinical Study in Integrative Medicine in China",
                    " The evolution of disease: anthropological<br>perspectives on epidemiologic transitions",
                    " Practical insights for paediatric<br>otolaryngology surgical cases and performing<br>microlaryngobronchoscopy during the COVID-19 pandemic",
                    " Heteroaggregation of an enveloped<br>bacteriophage with colloidal sediments and effect on virus<br>viability",
                    " Respiratory Syncytial Virus and Other<br>Pediatric Respiratory Virus Infections",
                    " Opinion piece: Microneurosurgery in COVID-19<br>positive patients",
                    " X-ray Structural and Biological Evaluation of<br>a Series of Potent and Highly Selective<br>Inhibitors of Human Coronavirus Papain-like Proteases",
                    " Topographical mapping of epitopes on the<br>glycoproteins of murine hepatitis virus-4 (strain JHM):<br>Correlation with biological activities",
                    " Protein structure analysis of the<br>interactions between SARS-CoV-2 spike protein and the human<br>ACE2 receptor: from conformational changes to<br>novel neutralizing antibodies",
                    " A planetary vision for one health",
                    " Rapid diagnosis of SARS-CoV-2 infection by<br>detecting IgG and IgM antibodies with an<br>immunochromatographic device: a prospective single-center study",
                    " A recombinant single chain antibody<br>neutralizes coronavirus infectivity but only slightly<br>delays lethal infection of mice",
                    " Development of real-time PCR assays for<br>detection and quantification of human bocavirus",
                    " Tackling COVID-19: Can the African continent<br>play the long game?",
                    " Insights into the Roles of Cyclophilin A During<br>Influenza Virus Infection",
                    " Putative contributions of circadian clock and<br>sleep in the context of SARS-CoV-2 infection",
                    " A Meta-Analysis of the Association between<br>Gender and Protective Behaviors in Response to<br>Respiratory Epidemics and Pandemics",
                    " A General Strategy to Endow Natural<br>Fusion-protein-Derived Peptides with Potent Antiviral Activity",
                    " Initial human transmission dynamics of the<br>pandemic (H1N1) 2009 virus in North America",
                    " First report and phylogenetic analysis of<br>porcine deltacoronavirus in Mexico",
                    " Consultation-Liaison Psychiatry in the Age of<br>COVID-19: Reaffirming Ourselves and Our Worth",
                    " China's capacity of hospitals to deal with<br>infectious diseases in the context of climate change",
                    " Tocilizumab therapy reduced intensive care<br>unit admissions and/or mortality in COVID-19<br>patients",
                    " Mechanisms of Cellular Membrane<br>Reorganization to Support Hepatitis C Virus Replication",
                    " A comparison of methods for purification and<br>concentration of norovirus GII-4 capsid virus-like<br>particles",
                    " Estimation of the Final Size of the COVID-19<br>Epidemic in Pakistan",
                    " Spatial patterns of Bovine Corona Virus and<br>Bovine Respiratory Syncytial Virus in the Swedish<br>beef cattle population",
                    " Respiratory and facial protection: a critical<br>review of recent literature",
                    " COVID 19: Real-time Forecasts of Confirmed<br>Cases, Active Cases, and Health Infrastructure<br>Requirements for India and its Majorly Affected States using<br>the ARIMA model.",
                    " Nasal cytokines as mediators of illness during<br>the common cold",
                    " Development of Real-Time PCR Array for<br>Simultaneous Detection of Eight Human Blood-Borne Viral<br>Pathogens",
                    " Constructal Pattern Formation in Nature,<br>Pedestrian Motion, and Epidemics Propagation",
                    " Antibiotic use for community-acquired<br>pneumonia in neonates and children: WHO evidence review",
                    " Molecular Approaches to Recognize Relevant<br>and Emerging Infectious Diseases in Animals",
                    " Molecular detection and characterisation of<br>feline morbillivirus in domestic cats in Malaysia",
                    " Murine Coronavirus-Induced Apoptosis in<br>17Cl-1 Cells Involves a Mitochondria-Mediated<br>Pathway and Its Downstream Caspase-8 Activation and<br>Bid Cleavage",
                    " Medical reviews. Coronaviruses.",
                    " How do we decide to de-isolate COVID-19<br>patients?",
                    " Stochastic persistence and stationary<br>distribution in an SIS epidemic model with media coverage",
                    " Chapter Four Lipid Nanoparticles for Short<br>Interfering RNA Delivery",
                    " Prophylactic and therapeutic intranasal<br>administration with an immunomodulator, Hiltonol® (Poly<br>IC:LC), in a lethal SARS-CoV-infected BALB/c mouse<br>model",
                    " Working experiences of nurses during the<br>Middle East respiratory syndrome outbreak",
                    " COVID-19, superinfections and antimicrobial<br>development: What can we expect?",
                    " Cocirculation of Four Infectious Bronchitis<br>Virus Lineages in Broiler Chickens in the Eastern<br>Region of Saudi Arabia from 2012 to 2014",
                    " Estimation of the epidemic properties of the<br>2019 novel coronavirus: A mathematical modeling<br>study",
                    " The multifaceted role of astrocytes in<br>regulating myelination",
                    " Serologic responses to SARS-CoV-2 infection<br>among hospital staff with mild disease in eastern<br>France",
                    " New readers and interpretations of<br>poly(ADP-ribosyl)ation",
                    " SARS-Coronavirus Open Reading Frame-8b<br>triggers intracellular stress pathways and activates<br>NLRP3 inflammasomes",
                    " Evolution of the 5′-end of genomic rna of murine<br>coronaviruses during passages in vitro",
                    " Growth of a murine coronavirus in a<br>microcarrier cell culture system",
                    " Detection of infectious salmon anaemia virus<br>by real-time RT–PCR",
                    " Anisotropic osmosis filtering for shadow<br>removal in images",
                    " Influenza and Influenza-like Viruses in<br>Children in the Epidemic Season 2015/2016 in Poland",
                    " Zwiesel bat banyangvirus, a potentially<br>zoonotic Huaiyangshan banyangvirus (Formerly known as<br>SFTS)–like banyangvirus in Northern bats from Germany",
                    " Diagnostic performance of influenza viruses<br>and RSV rapid antigen detection tests in children<br>in tertiary care",
                    " Clinical evaluation of IFN beta1b in COVID-19<br>pneumonia: a retrospective study",
                    " COVID-19 and diabetes: is metformin a friend or<br>foe?",
                    " Community-Acquired Respiratory<br>Paramyxovirus Infection After Allogeneic Hematopoietic<br>Cell Transplantation: A Single-Center Experience",
                    " Utility of an immunocytochemical assay using<br>aqueous humor in the diagnosis of feline infectious<br>peritonitis",
                    " The Role of Internists During Epidemics,<br>Outbreaks, and Bioterrorist Attacks",
                    " Human Mig chemokine: biochemical and<br>functional characterization",
                    " Novel Therapeutics Against West Nile Virus",
                    " Old Threat, New Enemy: Is Your Interventional<br>Radiology Service Ready for the Coronavirus Disease<br>2019?",
                    " Time Varying Markov Process with Partially<br>Observed Aggregate Data; An Application to Coronavirus",
                    " Determinants of QTL Mapping Power in the<br>Realized Collaborative Cross",
                    " Cantor-solus and Cantor-multus<br>Distributions",
                    " Control of Infectious Diseases in the Era of<br>European Clinical Microbiology Laboratory<br>Consolidation: New Challenges and Opportunities for the<br>Patient and for Public Health Surveillance",
                    " SARS Patients and Need for Treatment",
                    " Medical Ethics: Serious Reportable<br>Communicable Diseases",
                    " Climate change and infectious disease: time<br>for a new normal?",
                    " Diversity and distribution of ferns in<br>sub‐Saharan Africa, Madagascar and some islands of the<br>South Atlantic",
                    " Country differences in hospitalisation,<br>length of stay and admission to Intensive Care Units<br>due to SARS-CoV-2 infection: a rapid review of<br>available literature",
                    " A Review of Laboratory-Acquired Infections in<br>the Asia-Pacific: Understanding Risk and the Need<br>for Improved Biosafety for Veterinary and<br>Zoonotic Diseases",
                    " Enhancing legal preparedness for the<br>prevention and control of infectious diseases:<br>Experience from severe acute respiratory syndrome in Hong<br>Kong",
                    " Epidemiology of Parkinson's disease",
                    " Type III Interferons in Hepatitis C Virus<br>Infection",
                    " Community-Acquired Pneumonia",
                    " Structure and Dynamics of Sars Coronavirus<br>Main Proteinase (M(PRO))",
                    " Evolutionary relationship analysis of Middle<br>East respiratory syndrome coronavirus 4a and 4b<br>protein coding sequences",
                    " Rapid isolation and profiling of a diverse<br>panel of human monoclonal antibodies targeting the<br>SARS-CoV-2 spike protein",
                    " Porcine deltacoronavirus nsp5 inhibits<br>interferon-β production through the cleavage of NEMO",
                    " Advancements in Nucleic Acid Based<br>Therapeutics against Respiratory Viral Infections",
                    " Better Understanding on MERS Corona Virus<br>Outbreak in Korea",
                    " Alisporivir Inhibition of Hepatocyte<br>Cyclophilins Reduces HBV Replication and Hepatitis B<br>Surface Antigen Production",
                    " Chapter 7 Herbal extracts as antiviral agents",
                    " Evaluation of a multiplex ligation-dependent<br>probe amplification assay for the detection of<br>respiratory pathogens in oncological patients",
                    " CoronaVis: A Real-time COVID-19 Tweets<br>Analyzer",
                    " Analysis on the Pathogenesis of Symptomatic<br>Pulmonary Embolism with Human Genomics",
                    " Validation of γ-radiation and ultraviolet as a<br>new inactivators for foot and mouth disease virus<br>in comparison with the traditional methods",
                    " COVID-19 Outbreak: the gold rush and the<br>Responsibilities of the scientific community",
                    " Cell-type specific requirements for<br>thiol/disulfide exchange during HIV-1 entry and infection",
                    " Memory CD8 T cells mediate severe<br>immunopathology following respiratory syncytial virus<br>infection",
                    " Replacing nebulizers by MDI-spacers for<br>bronchodilator and inhaled corticosteroid administration:<br>Impact on the utilization of hospital resources",
                    " Risk Factors for Death from Influenza<br>A(H1N1)pdm09, State of São Paulo, Brazil, 2009",
                    " Can I Get Force Majeure from a Novel<br>Coronavirus?",
                    " A scoping review of Chikungunya virus<br>infection: epidemiology, clinical characteristics,<br>viral co-circulation complications, and control",
                    " What the Intensivists Need to Know About<br>Critically Ill Myeloma Patients",
                    " Dihydromyricetin: A review on identification<br>and quantification methods, biological<br>activities, chemical stability, metabolism and<br>approaches to enhance its bioavailability",
                    " Antigenic Cross-Reactivity between Severe<br>Acute Respiratory Syndrome—Associated<br>Coronavirus and Human Coronaviruses 229E and OC43",
                    " Canine Coronavirus Infection in Turkish Dog<br>Population",
                    " Dilated Cardiomyopathy in Juvenile<br>Portuguese Water Dogs",
                    " The Effects of an Online Mind-Body Training<br>Program on Stress, Coping Strategies, Emotional<br>Intelligence, Resilience and Psychological State",
                    " Subject index of Volume 5",
                    " Optimal fecal assessment",
                    " Potential Aggregation-Prone Regions in<br>Complementarity-Determining Regions of Antibodies and Their Contribution<br>Towards Antigen Recognition: A Computational<br>Analysis",
                    " Therapeutic and diagnostic implications of<br>Hsp90 activation",
                    " Editorial Commentary: Critical Contribution<br>of Laboratories to Outbreak Response Support for<br>Middle East Respiratory Syndrome Coronavirus",
                    " Radiation Therapy in King County, Washington<br>During the COVID-19 Pandemic: Balancing Patient<br>Care, Transmission Mitigation, and Resident<br>Training",
                    " Directional Airflow and Ventilation in<br>Hospitals: A Case Study of Secondary Airborne Infection",
                    " Clinical implications of rapid ePlex®<br>Respiratory Pathogen Panel testing compared to<br>laboratory-developed real-time PCR",
                    " Colchicine may not be effective in COVID-19<br>infection; it may even be harmful?",
                    " Discovery and Development of Toll-Like<br>Receptor 4 (TLR4) Antagonists: A New Paradigm for<br>Treating Sepsis and Other Diseases",
                    " Current status of personnel and<br>infrastructure resources for infection prevention and<br>control programs in the Republic of Korea: A national<br>survey",
                    " Characterization of the norovirus 3C-like<br>protease",
                    " The clinical pathology of severe acute<br>respiratory syndrome (SARS): a report from China",
                    " Antiviral effects of Lactobacillus ruminis<br>SPM0211 and Bifidobacterium longum SPM1205 and<br>SPM1206 on rotavirus-infected Caco-2 cells and a<br>neonatal mouse model",
                    " Inhibition of enterovirus 71 infection by<br>antisense octaguanidinium dendrimer-conjugated<br>morpholino oligomers",
                    " ARF-Like (ARL) Proteins",
                    " Susceptibility of the Lesser Mealworm,<br>Alphitobius diaperinus (Coleoptera: Tenebrionidae),<br>From Broiler Farms of Southern Brazil to<br>Insecticides",
                    " Translational Recoding Induced by G-Rich mRNA<br>Sequences That Form Unusual Structures",
                    " Optimally Robust Kalman Filtering at Work:<br>AO-, IO-, and Simultaneously IO- and AO- Robust<br>Filters",
                    " Determination and Analysis of Recurrent<br>Groups",
                    " Detection of feline coronavirus using<br>microcantilever sensors",
                    " The role of mental health services during the<br>COVID-19 outbreak in China",
                    " COVID-19: opportunity to learn from necessity",
                    " Animal Models of Demyelination",
                    " Alberta family physicians’ willingness to<br>work during an influenza pandemic: a<br>cross-sectional study",
                    " Global Initiative for Chronic Obstructive<br>Lung Disease strategy for the diagnosis,<br>management and prevention of chronic obstructive<br>pulmonary disease: An Asia–Pacific perspective",
                    " mBio Addresses the Pause in Gain-of-Function<br>(GOF) Experiments Involving Pathogens with<br>Pandemic Potential (PPP)",
                    " Identification of potential<br>cross-protective epitope between a new type of coronavirus<br>(2019-nCoV) and severe acute respiratory syndrome virus",
                    " Microfluidic-based biosensors toward<br>point-of-care detection of nucleic acids and proteins",
                    " Stakeholder views on the acceptability of<br>human infection studies in Malawi",
                    " Ribosomal frameshifting used in influenza A<br>virus expression occurs within the sequence<br>UCC_UUU_CGU and is in the +1 direction",
                    " Use of the Fluocinolone Acetonide<br>Intravitreal Implant for the Treatment of Noninfectious<br>Posterior Uveitis: 3-Year Results of a Randomized<br>Clinical Trial in a Predominantly Asian Population",
                    " PET imaging of COVID-19: the target and the<br>number",
                    " Biosecurity and biosafety in research on<br>emerging pathogens",
                    " Use of Reporter Genes in the Generation of<br>Vaccinia Virus-Derived Vectors",
                    " Targeting Viral Heart Disease by RNA<br>Interference",
                    " The Secretome Profiling of a Pediatric Airway<br>Epithelium Infected with hRSV Identified Aberrant<br>Apical/Basolateral Trafficking and Novel Immune Modulating<br>(CXCL6, CXCL16, CSF3) and Antiviral (CEACAM1)<br>Proteins",
                    " The minimalist architectures of viroporins<br>and their therapeutic implications",
                    " T(FH) cells accumulate in mucosal tissues of<br>humanized-DRAG mice and are highly permissive to HIV-1",
                    " Smallpox as a Weapon for Bioterrorism",
                    " Dermatologic Emergencies",
                    " Epidemiological and clinical<br>characteristics of the early phase of the COVID-19 epidemic in<br>Brazil",
                    " Molecular characterisation of the 3′-end of<br>the astrovirus genome",
                    " SARS Revisited: The Challenge of Controlling<br>Emerging Infectious Diseases at the Local, Regional,<br>Federal, and Global Levels",
                    " Asthma & Allergy SIG: Poster Session 1",
                    " IFN-γ– and IL-10–expressing virus<br>epitope-specific Foxp3(+) T reg cells in the central nervous<br>system during encephalomyelitis",
                    " Canine Isosporosis – Epidemiology of Field and<br>Experimental Infections",
                    " Three tachykinins in mammalian brain",
                    " Asymptomatic MERS-CoV Infection in Humans<br>Possibly Linked to Infected Dromedaries Imported from<br>Oman to United Arab Emirates, May 2015",
                    " Medical Tourism",
                    " Conclusion: The Next Decade and Beyond",
                    " Comment je fais: Prise en charge des patients en<br>Radiologie Interventionnelle Oncologique en période de<br>pandémie au SARS-CoV-2",
                    " iSNO-AAPair: incorporating amino acid<br>pairwise coupling into PseAAC for predicting cysteine<br>S-nitrosylation sites in proteins",
                    " The paradox of COVID-19 and pediatric<br>anesthesiology: opinion of the Pediatric Anesthesia Committee<br>of the Brazilian Society of Anesthesiology",
                    " The index case of SARS-CoV-2 in Scotland",
                    " Seasonal and Pandemic Influenza Surveillance<br>and Disease Severity",
                    " Viral-Bacterial Interactions in Childhood<br>Respiratory Tract Infections",
                    " CD163(+)CD204(+) tumor-associated<br>macrophages contribute to T cell regulation via<br>interleukin-10 and PD-L1 production in oral squamous cell<br>carcinoma",
                    " Physiotherapists during COVID-19: usual<br>business, in unusual times",
                    " Homology Models and Molecular Dynamics<br>Simulations of Main Proteinase from Coronavirus<br>Associated with Severe Acute Respiratory Syndrome (SARS)",
                    " Psychosocial factors, respiratory viruses<br>and exacerbation of asthma",
                    " Differential and convergent utilization of<br>autophagy components by positive-strand RNA viruses",
                    " The Origin and Evolution of Viruses",
                    " Cardiac problem and MERS",
                    " Abstracts for MASCC/ISOO Annual Meeting 2019",
                    " COVID-19: INITIAL PERIOPERATIVE AND<br>PERIANESTHESIA NURSING RESPONSE IN A MILITARY MEDICAL CENTER",
                    " Construction of a food-grade cell surface<br>display system for Lactobacillus casei",
                    " Early and massive testing saves lives:<br>COVID-19 related infections and deaths in the United<br>States during March of 2020",
                    " Surfactant replacement therapy in acute<br>respiratory distress syndrome from viral pneumonia",
                    " Type I Interferons as Regulators of Lung<br>Inflammation",
                    " Cleavage and Serum Reactivity of the Severe<br>Acute Respiratory Syndrome Coronavirus Spike<br>Protein",
                    " Clinical Approach to Dermatologic Disease in<br>Exotic Animals",
                    " Simultaneous detection of respiratory<br>viruses in children with acute respiratory infection<br>using two different multiplex reverse<br>transcription-PCR assays",
                    " The Ebola epidemic in West Africa: Challenges,<br>opportunities, and policy priority areas",
                    " Subjective neurological symptoms frequently<br>occur in patients with SARS-CoV2 infection",
                    " Alcohol and isolation: Experts comment on<br>drinking behavior during COVID‐19",
                    " Ebola Virus Disease in Humans:<br>Pathophysiology and Immunity",
                    " Risk factors for bronchiolitis severity: A<br>retrospective review of patients admitted to the university<br>hospital from central region of Slovenia",
                    " A Rational Approach to Estimating the Surgical<br>Demand Elasticity Needed to Guide Manpower<br>Reallocation during Contagious Outbreaks",
                    " Deciphering the bat virome catalog to better<br>understand the ecological diversity of bat viruses and the<br>bat origin of emerging infectious diseases",
                    " COVID-19: Reducing the risk of infection might<br>increase the risk of intimate partner violence",
                    " The scientific basis for currently proposed<br>management options for Hector’s and Maui dolphins: a<br>critique",
                    " Development of a rapid recombinase polymerase<br>amplification assay for the detection of Streptococcus<br>pneumoniae in whole blood",
                    " Combination of IMOD™ and Arbidol to increase<br>their immunomodulatory effects as a novel medicine<br>to prevent and cure influenza and some other<br>infectious diseases",
                    " A new visually improved and sensitive loop<br>mediated isothermal amplification (LAMP) for<br>diagnosis of symptomatic falciparum malaria",
                    " Chloroquine and hydroxychloroquine in the<br>management of COVID-19: much kerfuffle but little<br>evidence",
                    " The rubella virus E1 glycoprotein is arrested<br>in a novel post-ER, pre- Golgi compartment",
                    " Molecular characterization of<br>Cryptosporidium isolates from diarrheal dairy calves in France",
                    " Coronavirus phylogeny based on 2D graphical<br>representation of DNA sequence",
                    " Age-associated T-cell Clonal Expansions<br>(TCE) in vivo—Implications for Pathogen Resistance",
                    " Latent infection of human bocavirus<br>accompanied by flare of chronic cough, fatigue and episodes<br>of viral replication in an immunocompetent adult<br>patient, Cologne, Germany",
                    " Case Study – Italy",
                    " Inpatient Care of Patients with COVID-19: A<br>Guide for Hospitalists",
                    " Reverse Genetics for Type I Feline Coronavirus<br>Field Isolate To Study the Molecular Pathogenesis of<br>Feline Infectious Peritonitis",
                    " Viral RNA structure-based strategies to<br>manipulate translation",
                    " Clinical characteristics of IgG4-RD patients<br>infected with COVID-19 in Hubei, China",
                    " Incidentally Diagnosed COVID-19 Infection in<br>Trauma Patients; a Clinical Experience",
                    " A view from the common cold unit",
                    " Potential of carbohydrate‐binding agents as<br>therapeutics against enveloped viruses",
                    " Adoptive Transfer of Infectious Bronchitis<br>Virus Primed αβ T Cells Bearing CD8 Antigen Protects<br>Chicks from Acute Infection",
                    " Replacement Management in Cattle | Breeding<br>Standards and Pregnancy Management",
                    " Transmission routes of respiratory viruses<br>among humans",
                    " Comparison of the Indicators of Psychological<br>Stress in the Population of Hubei Province and<br>Non-Endemic Provinces in China During Two Weeks During the<br>Coronavirus Disease 2019 (COVID-19) Outbreak in February<br>2020",
                    " Structures of two elapid snake venom<br>metalloproteases with distinct activities highlight the<br>disulfide patterns in the D domain of ADAMalysin family<br>proteins",
                    " Development of a duplex real-time RT-qPCR<br>assay to monitor genome replication, gene<br>expression and gene insert stability during in vivo<br>replication of a prototype live attenuated canine<br>distemper virus vector encoding SIV gag",
                    " Tissue distribution of ACE2 protein, the<br>functional receptor for SARS coronavirus. A first step in<br>understanding SARS pathogenesis",
                    " The cyclophilin inhibitor CRV431 inhibits<br>liver HBV DNA and HBsAg in transgenic mice",
                    " Collection, particle sizing and detection of<br>airborne viruses",
                    " Durable Survival Outcomes in Primary and<br>Secondary Central Nervous System Lymphoma After<br>High-dose Chemotherapy and Autologous Stem Cell<br>Transplantation Using a Thiotepa, Busulfan, and<br>Cyclophosphamide Conditioning Regimen",
                    " Manipulation of the Coronavirus Genome Using<br>Targeted RNA Recombination with Interspecies Chimeric<br>Coronaviruses",
                    " Experience in managing an urban massive burn<br>incident: The Hangzhou bus attack on 5 July 2014",
                    " Globoid cell leukodystrophy (Krabbe's<br>disease) in a Japanese domestic cat",
                    " Predicting the cumulative number of cases for<br>the COVID-19 epidemic in China from early data",
                    " Recent Hits Acquired by BLAST (ReHAB): A tool to<br>identify new hits in sequence similarity searches",
                    " Ebola virus (EBOV) infection: Therapeutic<br>strategies",
                    " Efficacy of antibody-based therapies against<br>Middle East respiratory syndrome coronavirus<br>(MERS-CoV) in common marmosets",
                    " Lessons learned from a double-blind<br>randomised placebo-controlled study with a<br>iota-carrageenan nasal spray as medical device in children with<br>acute symptoms of common cold",
                    " Epidemiologically and Socio-economically<br>Optimal Policies via Bayesian Optimization",
                    " Viral bronchiolitis",
                    " Molecular and Functional Analysis of the Human<br>Prothrombinase Gene (HFGL2) and Its Role in Viral Hepatitis",
                    " Poster Sessions",
                    " Suppression of type I interferon production by<br>porcine epidemic diarrhea virus and degradation of<br>CREB-binding protein by nsp1",
                    " Relationship Between Aging and Renal<br>High-Affinity Sodium-Dependent Dicarboxylate<br>Cotransporter-3 Expression Characterized With Antifusion<br>Protein Antibody",
                    " Coevolution between simple sequence repeats<br>(SSRs) and virus genome size",
                    " Electrochemical nucleic acid detection based<br>on parallel structural dsDNA/recombinant<br>azurin hybrid",
                    " Discovery of potential<br>multi-target-directed ligands by targeting host-specific<br>SARS-CoV-2 structurally conserved main protease",
                    " Suppression of feline coronavirus<br>replication in vitro by cyclosporin A",
                    " Absolute quantitation of infectious salmon<br>anaemia virus using different real-time reverse<br>transcription PCR chemistries",
                    " Optimal Allocation of COVID-19 Test Kits Among<br>Accredited Testing Centers in the Philippines",
                    " The 9-kDa hydrophobic protein encoded at the 3′<br>end of the porcine transmissible gastroenteritis<br>coronavirus genome is membrane-associated",
                    " The impact of bacterial and viral co‐infection<br>in severe influenza",
                    " mRNA maturation in giant viruses: variation on<br>a theme",
                    " MERS, SARS and other coronaviruses as causes of<br>pneumonia",
                    " Efficacy of face mask in preventing<br>respiratory virus transmission: a systematic review and<br>meta-analysis",
                    " Chapter 32 Education and training in microbial<br>forensics",
                    " Social Capital and Health-Protective<br>Behavior Intentions in an Influenza Pandemic",
                    " Chapter 14 Middle East Respiratory<br>Syndrome-Coronavirus (MERS-CoV) Infection",
                    " Competitive impact of the air ticket levy on the<br>European airline market",
                    " Use of Transgenic Animals to Improve Human<br>Health and Animal Production",
                    " Description of the first acute bovine diarrhea<br>virus-2 outbreak in Israel",
                    " Chapter Four Parasites in Food: From a<br>Neglected Position to an Emerging Issue",
                    " Chapter One Supramolecular Architecture of<br>the Coronavirus Particle",
                    " Hemagglutination and structural<br>polypeptides of a new coronavirus associated with diarrhea<br>in infant mice",
                    " Next generation deep sequencing and vaccine<br>design: today and tomorrow",
                    " Altered Lipid Metabolism in Recovered SARS<br>Patients Twelve Years after Infection",
                    " In-silico analysis of SARS-CoV-2 genomes:<br>Insights from SARS encoded non-coding RNAs",
                    " Bats and Coronaviruses",
                    " Evidence for Trans splicing in trypanosomes",
                    " Projection of hospitalization by COVID-19 in<br>Brazilfollowing different social distances policies",
                    " Dynamics of HIV/AIDS in Turkey from 1985 to 2016",
                    " High-cell-density cultivations to increase<br>MVA virus production",
                    " Natural Bis-Benzylisoquinoline<br>Alkaloids-Tetrandrine, Fangchinoline, and Cepharanthine, Inhibit<br>Human Coronavirus OC43 Infection of MRC-5 Human Lung<br>Cells",
                    " COVID-19 pneumonia: different respiratory<br>treatments for different phenotypes?",
                    " Rewriting the rules for care of MDS and AML<br>patients in the time of COVID-19",
                    " Putting resiliency of a health system to the<br>test: COVID-19 in Taiwan",
                    " An Overview of Patent Law as Applied to the Field<br>of Veterinary Medicine",
                    " Discovery, diversity and evolution of novel<br>coronaviruses sampled from rodents in China",
                    " Visual analytics of geo-social interaction<br>patterns for epidemic control",
                    " A Rapid Review of the Asymptomatic Proportion<br>of PCR-Confirmed SARS-CoV-2 Infections in<br>Community Settings",
                    " Characterization of a nucleic acid probe for<br>the diagnosis of human coronavirus 229E<br>infections",
                    " CSANZ Position Statement on the Evaluation of<br>Patients Presenting With Suspected Acute Coronary<br>Syndromes During the COVID-19 Pandemic #",
                    " Systematic review of the prevalence of current<br>smoking among hospitalized COVID-19 patients in<br>China: could nicotine be a therapeutic option?",
                    " Chapter 33 Molecular Mechanisms and<br>Consequences of Immune and Nervous System Interactions",
                    " How to Avoid a No-Deal ER Exit",
                    " Intervention Serology and Interaction<br>Substitution: Modeling the Role of 'Shield Immunity' in<br>Reducing COVID-19 Epidemic Spread",
                    " Mucosal Delivery of RNAi Therapeutics",
                    " Characterization of a variant virus isolated<br>from neural cell culture after infection of mouse<br>coronavirus JHMV",
                    " The crucial role of bile acids in the entry of<br>porcine enteric calicivirus",
                    " Avian influenza, migratory birds and emerging<br>zoonoses: Unusual viral RNA, enteropathogens and<br>Cryptosporidium in poultry litter",
                    " Isolation and Characterization of<br>Polymorphic Microsatellite Markers for the Masked Palm<br>Civet (Paguma larvata)",
                    " Chest Computed Tomography Abnormalities and<br>Their Relationship to the Clinical Manifestation of<br>Respiratory Syncytial Virus Infection in a Genetically<br>Confirmed Outbreak",
                    " Secretory Nanoparticles of Neospora caninum<br>Profilin-Fused with the Transmembrane Domain of GP64 from<br>Silkworm Hemolymph",
                    " Chloroquine, an Endocytosis Blocking Agent,<br>Inhibits Zika Virus Infection in Different Cell Models",
                    " Transcriptome Sequencing and Annotation for<br>the Jamaican Fruit Bat (Artibeus jamaicensis)",
                    " Epidemiological investigation of the 119th<br>confirmed Middle East Respiratory Syndrome coronavirus<br>case with an indefinite mode of transmission during<br>the Pyeongtaek outbreak in Korea",
                    " Future Challenges for Vaccinologists",
                    " SHELF‐LIFE EXTENSION OF FRESH FISH — A REVIEW<br>PART I — SPOILAGE OF FISH",
                    " Rituximab-Related Pulmonary Toxicity",
                    " Long non-coding RNAs in the regulation of the<br>immune response",
                    " Fabrication of an anti-viral air filter with<br>SiO2–Ag nanoparticles and performance evaluation in a<br>continuous airflow condition",
                    " Visiting a sauna: does inhaling hot dry air<br>reduce common cold symptoms? A randomised controlled<br>trial",
                    " Genetic studies of diseases: Predicting siRNA<br>efficiency",
                    " CORONAVIRUS IN PREGNANCY AND DELIVERY: RAPID<br>REVIEW AND EXPERT CONSENSUS",
                    " Recent Experiences in Parameter-Free Data<br>Mining",
                    " Progress in the Development of Intrinsically<br>Conducting Polymer Composites as Biosensors",
                    " Deep learning Enables Accurate Diagnosis of<br>Novel Coronavirus (COVID-19) with CT images",
                    " H1N1 infection and acute respiratory failure:<br>Can we give non-invasive ventilation a chance?",
                    " Factors Affecting the Stability of<br>Transmissible Enteritis Virus of Turkeys",
                    " Importance of SARs-Cov-2 anosmia: From<br>phenomenology to neurobiology",
                    " Health shocks and their long-lasting impact on<br>health behaviors: Evidence from the 2009 H1N1<br>pandemic in Mexico",
                    " Effects of feeding pregnant beef cows<br>selenium-enriched alfalfa hay on selenium status and antibody<br>titers in their newborn calves",
                    " Production of Hen Egg Yolk Immunoglobulins<br>Simultaneously Directed Against Salmonella Enteritidis and<br>Salmonella Typhimurium in the Same Egg Yolk",
                    " A novel clustering method via<br>nucleotide-based Fourier power spectrum analysis",
                    " Vascular Epiphytic Medicinal Plants as<br>Sources of Therapeutic Agents: Their<br>Ethnopharmacological Uses, Chemical Composition, and Biological<br>Activities",
                    " Neurophysiological Correlates of the<br>Dunning-Kruger Effect",
                    " Coronaviruses in Children, Greece",
                    " Molecular Mechanism of Drug Resistance",
                    " Middle East respiratory syndrome–related<br>knowledge, preventive behaviours and risk perception<br>among nursing students during outbreak",
                    " Cluster of necrotizing enterocolitis in a<br>neonatal intensive care unit: New Mexico, 2007",
                    " Response to the Ebola virus disease outbreak in<br>the Democratic Republic of the Congo",
                    " Differential characteristics of the early<br>stage of lung inflammation induced by SARS-CoV<br>Nucleocapsid protein related to age in the mouse",
                    " Improving rheumatic fever surveillance in New<br>Zealand: results of a surveillance sector review",
                    " Recent advances in the identification of the<br>host factors involved in dengue virus replication",
                    " Remyelination In Multiple Sclerosis",
                    " Finding Covid-19 from Chest X-rays using Deep<br>Learning on a Small Dataset",
                    " Association of County-Level Socioeconomic<br>and Political Characteristics with Engagement in<br>Social Distancing for COVID-19",
                    " Mathematical model to reduce loop mediated<br>isothermal amplification (LAMP) false‐positive<br>diagnosis",
                    " Simian varicella virus causes robust<br>transcriptional changes in T cells that support viral<br>replication",
                    " Sporadic cases of adult measles: a research<br>article",
                    " Virus-modified exosomes for targeted RNA<br>delivery; A new approach in nanomedicine",
                    " Immune pathways and defence mechanisms in<br>honey bees Apis mellifera",
                    " Effectiveness of cough etiquette maneuvers in<br>disrupting the chain of transmission of infectious<br>respiratory diseases",
                    " Mycoplasma pneumoniae detection in children<br>with respiratory tract infections and influence on<br>management – a retrospective cohort study in Switzerland",
                    " Biomedical Waste",
                    " Control of a hospital-wide<br>vancomycin-resistant Enterococci outbreak",
                    " Should ACE Inhibitors and Angiotensin<br>Receptor Blockers Be Withdrawn in the Current Setting of<br>COVID-19 Infection?",
                    " Global health goals: lessons from the<br>worldwide effort to eradicate poliomyelitis",
                    " Human Coronaviruses and Other Respiratory<br>Viruses: Underestimated Opportunistic Pathogens of<br>the Central Nervous System?",
                    " Experience from Malaysia During the COVID-19<br>Movement Control Order",
                    " Synthesis of a bacteriophage MB78 late protein<br>by novel ribosomal frameshifting()",
                    " Letter to the Editor in Response to article:<br>“Clinical considerations for patients with diabetes in<br>times of COVID-19 epidemic (Gupta et al.)",
                    " A Single Residue Substitution in the<br>Receptor-Binding Domain of H5N1 Hemagglutinin Is Critical for<br>Packaging into Pseudotyped Lentiviral Particles",
                    " Year in review in intensive care medicine,<br>2004. I. Respiratory failure, infection, and sepsis",
                    " Physiology of the Respiratory Drive in ICU<br>Patients: Implications for Diagnosis and Treatment",
                    " Potential disease transmission from wild<br>geese and swans to livestock, poultry and humans: a<br>review of the scientific literature from a One Health<br>perspective",
                    " Alpha and lineage C betaCoV infections in<br>Italian bats",
                    " Vegetation of the Boreal Forests South of James<br>Bay: Non‐Centered Component Analysis of the<br>Vascular Flora",
                    " “Epidemiology and aetiology of<br>influenza-like illness among households in metropolitan<br>Vientiane, Lao PDR”: A prospective, community-based<br>cohort study",
                    " SENDAI VIRUS",
                    " Ultrarapid diagnosis, microscope imaging,<br>genome sequencing, and culture isolation of<br>SARS-CoV-2",
                    " Long-term outcome in acute myelogenous<br>leukemia autografted with mafosfamide-purged marrow<br>in a single institution: adverse events and<br>incidence of secondary myelodysplasia",
                    " Amino acid substitutions within the heptad<br>repeat domain 1 of murine coronavirus spike protein<br>restrict viral antigen spread in the central nervous<br>system",
                    " Driving Pressure During General Anesthesia<br>for Open Abdominal Surgery (DESIGNATION): study<br>protocol of a randomized clinical trial",
                    " Immunosenescence Modulation by Vaccination",
                    " Outcomes of Influenza A(H1N1)pdm09 Virus<br>Infection: Results from Two International Cohort Studies",
                    " Toxin-Based Therapeutic Approaches",
                    " Epimedium koreanum Nakai Water Extract<br>Exhibits Antiviral Activity against Porcine Epidermic<br>Diarrhea Virus In Vitro and In Vivo",
                    " Benefits of random‐priming: Exhaustive<br>survey of a cDNA library from lung tissue of a SARS<br>patient",
                    " Infections on the move: how transient phases of<br>host movement influence disease spread",
                    " Metapopulation modeling of COVID-19<br>advancing into the countryside: an analysis of<br>mitigation strategies for Brazil",
                    " SUMO fusion system facilitates soluble<br>expression and high production of bioactive human<br>fibroblast growth factor 23 (FGF23)",
                    " Are We Ready for Coronavirus Disease 2019<br>Arriving at Schools?",
                    " Proteomics for biodefense applications:<br>progress and opportunities",
                    " Risks and Epidemiology of Infections After<br>Hematopoietic Stem Cell Transplantation",
                    " Identify-Isolate-Inform: A Tool for Initial<br>Detection and Management of Zika Virus Patients in the<br>Emergency Department",
                    " The occurrence of polyomaviruses WUPyV and<br>KIPyV among patients with severe respiratory<br>infections",
                    " Using predicted imports of 2019-nCoV cases to<br>determine locations that may not be identifying all<br>imported cases",
                    " Research progress on human infection with<br>avian influenza H7N9",
                    " Europe, the bull and the Minotaur: the<br>biological legacy of a Neolithic love story",
                    " Retained copper fragments following removal<br>of a copper intrauterine device: Two case reports",
                    " Detection of contaminants in water supply: A<br>review on state-of-the-art monitoring technologies<br>and their applications",
                    " Serial interval of novel coronavirus<br>(2019-nCoV) infections",
                    " Ecological niche modeling to determine<br>potential niche of Vaccinia virus: a case only study",
                    " The Impact of Ebola Virus Disease on Government<br>Expenditure in Sierra Leone",
                    " High-Altitude Pulmonary Edema",
                    " Coronavirus Infections in the Central Nervous<br>System and Respiratory Tract Show Distinct Features<br>in Hospitalized Children",
                    " Lipopolysaccharide and Tumor Necrosis Factor<br>Alpha Inhibit Interferon Signaling in Hepatocytes<br>by Increasing Ubiquitin-Like Protease 18<br>(USP18) Expression",
                    " Improved Pharmacological and Structural<br>Properties of HIV Fusion Inhibitor AP3 over Enfuvirtide:<br>Highlighting Advantages of Artificial Peptide Strategy",
                    " ECR 2014, Part A",
                    " Renal histopathological analysis of 26<br>postmortem findings of patients with COVID-19 in China",
                    " The effect of emodin, an anthraquinone<br>derivative extracted from the roots of Rheum tanguticum,<br>against herpes simplex virus in vitro and in vivo",
                    " COVID-19 fault lines",
                    " Oral Communications Tuesday 15 July<br>Respiratory and pulmonary pharmacology (14.30‐15.30)",
                    " EQUINE HERPESVIRUSES 4. CONCURRENT INFECTION<br>IN HORSES WITH STRANGLES AND CONJUNCTIVITIS",
                    " Proposed Clinical Indicators for Efficient<br>Screening and Testing for COVID-19 Infection from<br>Classification and Regression Trees (CART) Analysis",
                    " Acute Hyperglycemic Crises with Coronavirus<br>Disease-19: Case Reports",
                    " All-Cause Mortality in Tianjin, China,<br>1999-2004",
                    " Optimal control of a fractional order model for<br>granular SEIR epidemic with uncertainty",
                    " Barrier Shields: Not Just for Intubations in<br>Today’s COVID-19 World?",
                    " The loss of aquatic and riparian plant<br>communities: Implications for their consumers in a riverine<br>food web",
                    " A Compressed Sensing Approach to<br>Group-testing for COVID-19 Detection",
                    " The Clinical Definitions of Asthma",
                    " Chapter 16 RNA Viruses in Parasitoid Wasps",
                    " Multiple organ failure and coma as initial<br>presentation of pheochromocytoma in a patient with multiple<br>endocrine neoplasia (MEN) type II A",
                    " Clinical considerations in the diagnosis of<br>viral respiratory infections",
                    " Re-emergent Human Adenovirus Genome Type 7d<br>Caused an Acute Respiratory Disease Outbreak in<br>Southern China After a Twenty-one Year Absence",
                    " Development and evaluation of real-time PCR<br>assays for the detection of the newly identified KI and<br>WU polyomaviruses",
                    " Low albumin levels are associated with poorer<br>outcomes in a case series of COVID-19 patients in Spain: a<br>retrospective cohort study",
                    " SARS-CoV-2 detection in setting of viral swab<br>scarcity: are MRSA swabs and viral swabs equivalent?",
                    " A randomized, controlled trial of triple<br>antiviral therapy as initial treatment of chronic<br>hepatitis C in HIV-infected patients",
                    " Dynamical asymmetry exposes 2019-nCoV<br>prefusion spike",
                    " Potentiation of macrophage activity by thymol<br>through augmenting phagocytosis",
                    " Construction and characterization of porcine<br>single-chain fragment variable antibodies that neutralize<br>transmissible gastroenteritis virus in vitro",
                    " Advances in the diagnosis of key<br>gastrointestinal nematode infections of livestock, with an<br>emphasis on small ruminants",
                    " The Utility of Acute‐Phase Proteins in the<br>Assessment of Treatment Response in Dogs With Bacterial<br>Pneumonia",
                    " Safety and efficacy of different anesthetic<br>regimens for parturients with COVID-19 undergoing<br>Cesarean delivery: a case series of 17 patients",
                    " Postoperative Liver Failure",
                    " Prevention and management of oral infections<br>in cancer patients",
                    " Reverse transcription-loop-mediated<br>isothermal amplification for the detection of rodent<br>coronaviruses",
                    " A novel reporter system for neutralizing and<br>enhancing antibody assay against dengue virus",
                    " Study on the influence of voids on high-rise<br>building on the wind environment",
                    " Coast-to-coast spread of SARS-CoV-2 in the<br>United States revealed by genomic epidemiology",
                    " Contact Heterogeneity, Rather Than<br>Transmission Efficiency, Limits the Emergence and Spread of<br>Canine Influenza Virus",
                    " Host nutritional status: the neglected<br>virulence factor",
                    " Chapter 7 Environmental and Safety Issues With<br>Nanoparticles",
                    " Effects of echinacea on the frequency of upper<br>respiratory tract symptoms: a randomized, double-blind,<br>placebo-controlled trial",
                    " Possible SARS Coronavirus Transmission<br>during Cardiopulmonary Resuscitation",
                    " Antiviral activity of Carbenoxolone disodium<br>against dengue virus infection",
                    " The complement system",
                    " Neuroimmunomodulation: Stress and immune<br>function: The Lovelace Institutes, Albuquerque, New<br>Mexico 7–9 October 1994",
                    " Diagnostic Testing or Empirical Therapy for<br>Patients Hospitalized with Suspected Influenza: What<br>to Do?",
                    " Acute renal impairment in<br>coronavirus-associated severe acute respiratory syndrome",
                    " Protein‐Templated Fragment Ligations—From<br>Molecular Recognition to Drug Discovery",
                    " Reaction Cycles of Halogen Species in the<br>Immune Defense: Implications for Human Health and<br>Diseases and the Pathology and Treatment of Covid19",
                    " Spread of Canine Influenza A(H3N2) Virus,<br>United States",
                    " Application-oriented mathematical<br>algorithms for group testing",
                    " Dissecting human antibody responses: useful,<br>basic and surprising findings",
                    " Detection of viral acute lower respiratory<br>tract infection in hospitalized infants using<br>real-time PCR",
                    " IDBD: Infectious Disease Biomarker Database",
                    " A mathematical model for estimating the<br>age-specific transmissibility of a novel coronavirus",
                    " Geriatric mental health and COVID-19: An<br>eye-opener to the situation of the Arab countries in the<br>Middle East and North Africa Region",
                    " The business of making vaccines",
                    " Tissue Culture Models",
                    " Rapid Implementation of Inpatient<br>Telepalliative Medicine Consultations during COVID-19<br>Pandemic",
                    " Pneumonia After Thoracic Surgery",
                    " HTLV-3/4 and simian foamy retroviruses in<br>humans: Discovery, epidemiology, cross-species<br>transmission and molecular virology",
                    " Does the human placenta express the canonical<br>cell entry mediators for SARS-CoV-2?",
                    " Important considerations regarding the<br>future management of Coronavirus (COVID-19)",
                    " Role of the golgi apparatus in cellular<br>pathology",
                    " Pandemic Stories: Rhetorical Motifs in<br>Journalists’ Coverage of Biomedical Risk",
                    " Neutralizing Antibody to Calf Diarrhea<br>Coronavirus in Various Animal Species in Japan",
                    " Radiological and Nuclear Terrorism: The<br>Oncologic Emergency Response",
                    " \"Stay Nearby or Get Checked\": A Covid-19<br>Lockdown Exit Strategy",
                    " Dogs immunized with LBSap vaccine displayed<br>high levels of IL-12 and IL-10 cytokines and CCL4,<br>CCL5 and CXCL8 chemokines in the dermis",
                    " Interferon-Stimulated Genes—Mediators of<br>the Innate Immune Response during Canine<br>Distemper Virus Infection",
                    " Is there a clinical difference between<br>influenza A and B virus infections in hospitalized<br>patients?: Results after routine polymerase chain<br>reaction point-of-care testing in the emergency room<br>from 2017/2018",
                    " Performance of Facepiece Respirators and<br>Surgical Masks Against Surgical Smoke: Simulated<br>Workplace Protection Factor Study",
                    " COVID-19 and ART: the view of the Italian<br>Society of Fertility and Sterility and Reproductive<br>Medicine",
                    " Ocular Mucosal Immunity",
                    " A novel mechanism for immune regulation after<br>human lung transplantation",
                    " Evolution of Viruses",
                    " How Quickly Can We Predict Users’ Ratings on<br>Aesthetic Evaluations of Websites? Employing Machine<br>Learning on Eye-Tracking Data",
                    " ASTHO at 75: Celebrating the Past and Preparing<br>for the Future",
                    " Knowledge, Attitudes and Behaviours of<br>Healthcare Workers in the Kingdom of Saudi Arabia to MERS<br>Coronavirus and Other Emerging Infectious Diseases",
                    " Corticosteroid use in selected patients with<br>severe Acute Respiratory Distress Syndrome related<br>to Covid-19",
                    " Object Segmentation Tracking from Generic<br>Video Cues",
                    " A SARS-CoV-2 Vaccination Strategy Focused on<br>Population-Scale Immunity",
                    " Public Health Responses to Reemergence of<br>Animal Rabies, Taiwan, July 16–December 28, 2013",
                    " Energy Efficient Software Development<br>Process Evaluation for MacOS Devices",
                    " A comparative epidemiologic analysis of SARS<br>in Hong Kong, Beijing and Taiwan",
                    " Interventional Radiology Procedures for<br>COVID-19 Patients: How we Do it",
                    " VCP/p97 Is a Proviral Host Factor for<br>Replication of Chikungunya Virus and Other Alphaviruses",
                    " Regional health governance: A suggested<br>agenda for Southern African health diplomacy",
                    " Clinical features of COVID-19 in elderly<br>patients: A comparison with young and middle-aged<br>patients",
                    " Relevance of enriched expression of<br>SARS-CoV-2 binding receptor ACE2 in gastrointestinal<br>tissue with pathogenesis of digestive symptoms,<br>diabetes-associated mortality, and disease recurrence in COVID-19<br>patients",
                    " High-Throughput Sequencing-Based Immune<br>Repertoire Study during Infectious Disease",
                    " COVID-19: $R_0$ is lower where outbreak is<br>larger",
                    " Post-mortem diagnosis, of cytomegalovirus<br>and varicella zoster virus co-infection by<br>combined histology and tissue molecular biology, in a<br>sudden unexplained infant death",
                    " An overview of COVID-19",
                    " List of contents",
                    " Cost‐Effective Antibiotic Prescribing",
                    " The New Challenge of Geriatrics: Saving Frail<br>Older People from the SARS-CoV-2 Pandemic Infection",
                    " WFPHA: World Federation of Public Health<br>Associations",
                    " Blood safety and the choice of anti‐hemophilic<br>factor concentrate",
                    " The role of helium gas in medicine",
                    " Detectable serum SARS-CoV-2 viral load<br>(RNAaemia) is closely correlated with drastically<br>elevated interleukin 6 (IL-6) level in critically ill<br>COVID-19 patients",
                    " Housing And Welfare",
                    " DGHM 2011",
                    " Mayo Clinic Proceedings 2004: A View of the<br>Present, a Peek at the Future",
                    " Coordinated Destruction of Cellular Messages<br>in Translation Complexes by the<br>Gammaherpesvirus Host Shutoff Factor and the Mammalian<br>Exonuclease Xrn1",
                    " Laryngitis, Tracheitis, Epiglottitis, and<br>Bronchiolitis: Sore Throat, Change in Voice, Feverora<br>Wheezing Infant in Respiratory Distress",
                    " Influenza",
                    " Facilitating Access to Multilingual COVID-19<br>Information via Neural Machine Translation",
                    " Learning to Rank Images with Cross-Modal Graph<br>Convolutions",
                    " Impact of meteorological factors on the<br>COVID-19 transmission: A multi-city study in China",
                    " A clustering of rna recombination sites<br>adjacent to a hypervariable region of the peplomer gene<br>of murine coronavirus",
                    " Control dynamics of severe acute respiratory<br>syndrome transmission",
                    " Severe weather warnings predict fracture<br>epidemics",
                    " Phylodynamic analysis and evaluation of the<br>balance between anthropic and environmental factors<br>affecting IBV spreading among Italian poultry farms",
                    " Genetic epidemiology of porcine epidemic<br>diarrhoea virus circulating in China in 2012–2017 based<br>on spike gene",
                    " Chromosomes and expression mechanisms",
                    " Respiratory Viruses and Torque Teno Virus in<br>Adults with Acute Respiratory Infections",
                    " Disordered Residues and Patterns in the<br>Protein Data Bank",
                    " Metalloprotease ADAM17 regulates porcine<br>epidemic diarrhea virus infection by modifying<br>aminopeptidase N",
                    " Cancer Patient Care during COVID-19",
                    " The Immunology of Bovine Respiratory Disease:<br>Recent Advancements",
                    " A novel method for the capture-based<br>purification of whole viral native RNA genomes",
                    " Diagnosis of Gallbladder Cancer Using<br>Matrix-Assisted Laser Desorption/Ionization Time-of-Flight<br>Profiling",
                    " The potential of targeted antibody<br>prophylaxis in SARS outbreak control: A mathematic<br>analysis",
                    " Conflicts with diarrheal pathogens trigger<br>rapid evolution of an intestinal signaling axis",
                    " 19. Jahrestagung der GfH, ÖGH und SGMG, 8.-10.<br>April 2008 in Hannover: Abstracts mit Autorenindex",
                    " Selective gene silencing by viral delivery of<br>short hairpin RNA",
                    " Fever in Common Infectious Diseases",
                    " Respiratory Viral Infections in Solid Organ<br>and Hematopoietic Stem Cell Transplantation",
                    " Advancing the global health security agenda in<br>light of the 2015 annual Hajj pilgrimage and other<br>mass gatherings",
                    " Etiopathogenesis and Pathophysiology of<br>Malaria",
                    " Codon adaptation biases among sylvatic and<br>urban genotypes of Dengue virus type 2",
                    " Rhinoviruses",
                    " Lawsonia intracellularis infection and<br>proliferative enteropathy in foals",
                    " Identification of Taiwan and China-like<br>recombinant avian infectious bronchitis viruses in Taiwan",
                    " MERS coronavirus envelope protein has a single<br>transmembrane domain that forms pentameric ion channels",
                    " Primary Immunodeficiency Disorders in<br>Kuwait: First Report from Kuwait National Primary<br>Immunodeficiency Registry (2004–2006)",
                    " Abdominal Muscle Activity during Mechanical<br>Ventilation Increases Lung Injury in Severe Acute<br>Respiratory Distress Syndrome",
                    " Improved Diagnosis of the Etiology of<br>Community-Acquired Pneumonia with Real-Time Polymerase Chain<br>Reaction",
                    " Prior infection of pigs with a recent human H3N2<br>influenza virus confers minimal cross‐protection<br>against a European swine H3N2 virus",
                    " Regional Diversification of Influenza<br>Activity in Poland During the 2015/16 Epidemic Season",
                    " Comparison of Temporal and Spatial Dynamics of<br>Seasonal H3N2, Pandemic H1N1 and Highly Pathogenic<br>Avian Influenza H5N1 Virus Infections in Ferrets",
                    " A cohort study of the effect of winter dysentery<br>on herd-level milk production",
                    " Purification of cell culture‐derived human<br>influenza A virus by size‐exclusion and anion‐exchange<br>chromatography",
                    " Porcine epidemic diarrhea virus (PEDV)<br>introduction into a naive Dutch pig population in 2014",
                    " COVID-19: before stopping specific infection<br>control measures, be sure to exclude the diagnosis",
                    " A community-based approach to influenza<br>assessment and treatment during a pandemic",
                    " Partial comparison of the NxTAG Respiratory<br>Pathogen Panel Assay with the Luminex xTAG Respiratory<br>Panel Fast Assay V2 and singleplex real-time<br>polymerase chain reaction for detection of respiratory<br>pathogens",
                    " The Psychological effect of COVID-19 on the<br>Elderly in China",
                    " The Emergence of an Asia-Pacific Diplomacy of<br>Counter-Terrorism in Tackling the Islamic State Threat",
                    " 2017 Peripheral Nerve Society Meeting July<br>8–12, 2017 Sitges, Barcelona, Spain",
                    " The Era of Human-Induced Diseases",
                    " Chapter 23 Enzymatic Production of Steviol<br>Glucosides Using β-Glucosidase and Their Applications",
                    " Infections in Confined Spaces: Cruise Ships,<br>Military Barracks, and College Dormitories",
                    " Biosafety Level 3 Laboratory for Autopsies of<br>Patients with Severe Acute Respiratory Syndrome:<br>Principles, Practices, and Prospects",
                    " Imaging features of 2019 novel coronavirus<br>pneumonia",
                    " Proactive social distancing mitigates<br>COVID-19 outbreaks within a month across 58 mainland<br>China cities",
                    " Development and evaluation of an efficient<br>3′-noncoding region based SARS coronavirus (SARS-CoV)<br>RT-PCR assay for detection of SARS-CoV infections",
                    " Respiratory virus panels for global<br>surveillance of emerging infectious diseases",
                    " Identification of Linear B-Cell Epitopes on<br>Hemagglutinin Protein of Canine Distemper Virus Using Two<br>Monoclonal Antibodies",
                    " An alternative workflow for molecular<br>detection of SARS-CoV-2 - escape from the NA extraction<br>kit-shortage",
                    " The Burden of COVID-19 in People Living with<br>HIV: A Syndemic Perspective",
                    " Comprehensive structural analysis of<br>designed incomplete polypeptide chains of the<br>replicase nonstructural protein 1 from the severe acute<br>respiratory syndrome coronavirus",
                    " Letter: Surgical Management of Brain Tumor<br>Patients in the COVID-19 Era",
                    " Interactions among human behavior, social<br>networks, and societal infrastructures: A Case Study in<br>Computational Epidemiology",
                    " Successful cross-protective efficacy<br>induced by heat-adapted live attenuated<br>nephropathogenic infectious bronchitis virus derived from a<br>natural recombinant strain",
                    " Lung Transplantation",
                    " Accumulation of natural killer and cytotoxic T<br>large granular lymphocytes in the liver during virus<br>infection",
                    " LUNG ULTRASOUND IN THE COVID-19 PANDEMIC: A<br>PRACTICAL GUIDE FOR OBSTETRICIANS AND GYNECOLOGISTS",
                    " GPI‐anchored aminopeptidase is involved in<br>the acrosome reaction in sperm of the mussel<br>mytilus edulis",
                    " Biological Properties, Current Applications<br>and Potential Therapeautic Applications of<br>Brevinin Peptide Superfamily",
                    " Structural Insights into the Interaction of<br>Coronavirus Papain-Like Proteases and<br>Interferon-Stimulated Gene Product 15 from Different Species",
                    " Recent advances in pharmacological research<br>on Ecklonia species: a review",
                    " How health anxiety influences responses to<br>viral outbreaks like COVID-19: What all<br>decision-makers, health authorities, and health care<br>professionals need to know",
                    " Determining the Provincial and National<br>Burden of Influenza-Associated Severe Acute<br>Respiratory Illness in South Africa Using a Rapid<br>Assessment Methodology",
                    " Bovine coronaviruses from the respiratory<br>tract: Antigenic and genetic diversity",
                    " Sphenisciformes, Gaviiformes,<br>Podicipediformes, Procellariiformes, and Pelecaniformes",
                    " Targeting CCL5 in inflammation",
                    " Analysis of SARS-CoV-2-controlled autophagy<br>reveals spermidine, MK-2206, and niclosamide as<br>putative antiviral therapeutics",
                    " The Global Phylogeography of Lyssaviruses -<br>Challenging the 'Out of Africa' Hypothesis",
                    " Identfication of viral and bacterial<br>etiologic agents of the pertussis-like syndrome in<br>children under 5 years old hospitalized",
                    " COVID-19 Digestive Symptoms Mimicking<br>Internal Hernia Presentation After Roux-en-Y-Gastric<br>Bypass; Comment on “Internal Hernia in the Times of<br>COVID-19: to Laparoscope or Not to Laparoscope?”",
                    " Pandemic: lessons for today and tomorrow?",
                    " Engineered Protein Model of the ATP synthase<br>H(+)- Channel Shows No Salt Bridge at the<br>Rotor-Stator Interface",
                    " Legionnaires’ Disease",
                    " Paediatric SIG: Poster Session",
                    " Severe acute respiratory syndrome<br>coronavirus 19 and human pregnancy",
                    " Precautions in ophthalmic practice in a<br>hospital with a major acute SARS outbreak: an experience<br>from Hong Kong",
                    " Immunogenicity of Different Forms of Middle<br>East Respiratory Syndrome S Glycoprotein",
                    " The transmissibility of novel Coronavirus in<br>the early stages of the 2019-20 outbreak in Wuhan:<br>Exploring initial point-source exposure sizes and<br>durations using scenario analysis",
                    " Effectiveness of a negative-pressure patient<br>isolation hood shown using particle count",
                    " Hendra Virus Outbreak with Novel Clinical<br>Features, Australia"
                  ],
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