From 97f94e0ab3c7f1b8211a750c8ff3ad489506220a Mon Sep 17 00:00:00 2001 From: John Elizarraras <13990267+iblacksand@users.noreply.github.com> Date: Wed, 6 Mar 2024 21:57:11 -0800 Subject: [PATCH] Signed bar graph (#21) * windows target * log10p for meta analysis and fix overlap id for ORA * remove printing * idmapping fixes * fix id mapping * add score check * fix errors with bars * add size start * improve id mapping for metabolites * possible fix * diagnositics * add null checks * more diagnostics * fix metabolite mapping * add try to error prone section * bigger block * edit links if possible * potential fix * diagnostics * fdr fix if equal to 1 * revert broken links * fix bounds * fix multi-list with no descriptions * fix multiora * fix ora gene set des being overridden * add place for no genesetdes * address another black hole * fix error with genesetdes * fix example * fix gene set prob * test meta-p * fix variable name * stop * fix logp calculation * fix nes vals * fix meta-p if only one p_val * fix ora meta logp * better ora signs * better log p for single lists * make gene set null * better logp * add printing * only add colnames if success possible * fix negative meta-p * fix hmdb ora coloring * use two to one * remove empty argument * custom two2one' * abs p vals * diagnostics * remove bad filter * remove print * add flips * revert * add better flip * fix flips * fix flips * use paste0 * use new bool_flips * use new variable * use abs for single meta analysis * more small ora fixes * remove bad genetable init * diagnostic * possible fix * fix diagn * more fixes * more diag * alternative meta * alternative meta * fix starting i * diags * more updates * na check * fix index * add better p value check * fix flips * revert link if needed * add cookie consent --- .../templates/meta_analysis_template.mustache | 35 ++++++++++++++---- inst/templates/meta_partial_template.mustache | 35 ++++++++++++++---- inst/templates/meta_template.mustache | 36 +++++++++++++++---- inst/templates/ntaTemplate.mustache | 36 ++++++++++++++----- inst/templates/template.mustache | 36 +++++++++++++++---- 5 files changed, 142 insertions(+), 36 deletions(-) diff --git a/inst/templates/meta_analysis_template.mustache b/inst/templates/meta_analysis_template.mustache index 978629e..87dffe0 100644 --- a/inst/templates/meta_analysis_template.mustache +++ b/inst/templates/meta_analysis_template.mustache @@ -5,13 +5,6 @@ WebGestalt (WEB-based GEne SeT AnaLysis Toolkit) - {{#hasCytoscape}} @@ -25,6 +18,34 @@ ga('send', 'pageview'); + + + + + + + + + +
diff --git a/inst/templates/meta_partial_template.mustache b/inst/templates/meta_partial_template.mustache index 814eaf1..af9f218 100644 --- a/inst/templates/meta_partial_template.mustache +++ b/inst/templates/meta_partial_template.mustache @@ -5,13 +5,6 @@ WebGestalt (WEB-based GEne SeT AnaLysis Toolkit) - {{#hasCytoscape}} @@ -25,6 +18,34 @@ ga('send', 'pageview'); + + + + + + + + + +
diff --git a/inst/templates/meta_template.mustache b/inst/templates/meta_template.mustache index 317c5b2..6c63678 100644 --- a/inst/templates/meta_template.mustache +++ b/inst/templates/meta_template.mustache @@ -6,13 +6,7 @@ WebGestalt (WEB-based GEne SeT AnaLysis Toolkit) - + @@ -26,6 +20,34 @@ ga('send', 'pageview'); + + + + + + + + + + {{>header}}
diff --git a/inst/templates/ntaTemplate.mustache b/inst/templates/ntaTemplate.mustache index 7de2356..34ac6a1 100644 --- a/inst/templates/ntaTemplate.mustache +++ b/inst/templates/ntaTemplate.mustache @@ -4,14 +4,6 @@ - WebGestalt (WEB-based GEne SeT AnaLysis Toolkit) @@ -20,6 +12,34 @@ ga('send', 'pageview'); + + + + + + + + + + {{>header}}
diff --git a/inst/templates/template.mustache b/inst/templates/template.mustache index 3ec0862..6ece35e 100644 --- a/inst/templates/template.mustache +++ b/inst/templates/template.mustache @@ -5,13 +5,7 @@ WebGestalt (WEB-based GEne SeT AnaLysis Toolkit) - + {{#hasCytoscape}} @@ -25,6 +19,34 @@ ga('send', 'pageview'); + + + + + + + + + + {{>header}}