deploy: 8b395de

Author: adamltyson

.doctrees/documentation/brainglobe-atlasapi/usage/using-the-files-directly.doctree

@@ -8,6 +8,7 @@ In each atlas directory, there will be the following subdirectories and files:
 
 * `reference.tiff` The "template" brain image, i.e., a structural image of the brain \(or average of brains\) in which the annotations are defined
 * `annotation.tiff` An image of the same shape as `reference.tiff` but in which each pixel value corresponds to a unique brain area. A pixel value of 0 typically refers to areas outside the brain
+* `hemispheres.tiff` (optional) An image of the same shape as `reference.tiff` but in which each pixel value corresponds to either the left or right hemisphere. They are labelled 0 and 1 respectively. This file is only present for asymmetrical templates
 * `meshes` A directory of mesh files \(as `.obj`\) for each brain region, defined by the unique region ID
 * `structures.json` A file describing the mapping of brain region ID to region name, and the hierarchy of brain structures
 * `metadata.json` A file containing the atlas metadata, such as the shape of the images, the anatomical orientation, and the details of the source of the atlas

.doctrees/environment.pickle

@@ -428,6 +428,11 @@ In no particular order:
 :link: https://github.com/GuillaumeLeGoc
 :::
 
+:::{grid-item-card}    Harry Carey 
+:img-bottom: https://avatars.githubusercontent.com/u/38996929?v=4
+:link: https://github.com/PolarBean
+:::
+
 ::::
 
 Inspired by [All Contributors](https://allcontributors.org/). All information is sourced from GitHub. If any changes 

.doctrees/people.doctree

@@ -1064,14 +1064,14 @@ <h2 class="ablog-post-title">
     </span>
 
 
-  <a href="blog/location/switzerland.html">Switzerland</a>
+  <a href="blog/location/zurich.html">Zurich</a>
 
   ,
 
 
 
 
-  <a href="blog/location/zurich.html">Zurich</a>
+  <a href="blog/location/switzerland.html">Switzerland</a>
 
 
 

_sources/documentation/brainglobe-atlasapi/usage/using-the-files-directly.md.txt

@@ -592,14 +592,14 @@ <h2 class="ablog-post-title">
     </span>
 
 
-  <a href="location/switzerland.html">Switzerland</a>
+  <a href="location/zurich.html">Zurich</a>
 
   ,
 
 
 
 
-  <a href="location/zurich.html">Zurich</a>
+  <a href="location/switzerland.html">Switzerland</a>
 
 
 

_sources/people.md.txt

@@ -592,14 +592,14 @@ <h2 class="ablog-post-title">
     </span>
 
 
-  <a href="../location/switzerland.html">Switzerland</a>
+  <a href="../location/zurich.html">Zurich</a>
 
   ,
 
 
 
 
-  <a href="../location/zurich.html">Zurich</a>
+  <a href="../location/switzerland.html">Switzerland</a>
 
 
 

blog.html

@@ -592,14 +592,14 @@ <h2 class="ablog-post-title">
     </span>
 
 
-  <a href="../location/switzerland.html">Switzerland</a>
+  <a href="../location/zurich.html">Zurich</a>
 
   ,
 
 
 
 
-  <a href="../location/zurich.html">Zurich</a>
+  <a href="../location/switzerland.html">Switzerland</a>
 
 
 

blog/2023.html

@@ -1064,14 +1064,14 @@ <h2 class="ablog-post-title">
     </span>
 
 
-  <a href="../location/switzerland.html">Switzerland</a>
+  <a href="../location/zurich.html">Zurich</a>
 
   ,
 
 
 
 
-  <a href="../location/zurich.html">Zurich</a>
+  <a href="../location/switzerland.html">Switzerland</a>
 
 
 

blog/author/alessandro-felder.html

@@ -592,14 +592,14 @@ <h2 class="ablog-post-title">
     </span>
 
 
-  <a href="#">Switzerland</a>
+  <a href="zurich.html">Zurich</a>
 
   ,
 
 
 
 
-  <a href="zurich.html">Zurich</a>
+  <a href="#">Switzerland</a>
 
 
 

blog/category/brainrender.html

@@ -592,14 +592,14 @@ <h2 class="ablog-post-title">
     </span>
 
 
-  <a href="switzerland.html">Switzerland</a>
+  <a href="#">Zurich</a>
 
   ,
 
 
 
 
-  <a href="#">Zurich</a>
+  <a href="switzerland.html">Switzerland</a>
 
 
 

blog/language/english.html

@@ -667,6 +667,7 @@ <h1>Using the files directly<a class="headerlink" href="#using-the-files-directl
 <ul class="simple">
 <li><p><code class="docutils literal notranslate"><span class="pre">reference.tiff</span></code> The “template” brain image, i.e., a structural image of the brain (or average of brains) in which the annotations are defined</p></li>
 <li><p><code class="docutils literal notranslate"><span class="pre">annotation.tiff</span></code> An image of the same shape as <code class="docutils literal notranslate"><span class="pre">reference.tiff</span></code> but in which each pixel value corresponds to a unique brain area. A pixel value of 0 typically refers to areas outside the brain</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">hemispheres.tiff</span></code> (optional) An image of the same shape as <code class="docutils literal notranslate"><span class="pre">reference.tiff</span></code> but in which each pixel value corresponds to either the left or right hemisphere. They are labelled 0 and 1 respectively. This file is only present for asymmetrical templates</p></li>
 <li><p><code class="docutils literal notranslate"><span class="pre">meshes</span></code> A directory of mesh files (as <code class="docutils literal notranslate"><span class="pre">.obj</span></code>) for each brain region, defined by the unique region ID</p></li>
 <li><p><code class="docutils literal notranslate"><span class="pre">structures.json</span></code> A file describing the mapping of brain region ID to region name, and the hierarchy of brain structures</p></li>
 <li><p><code class="docutils literal notranslate"><span class="pre">metadata.json</span></code> A file containing the atlas metadata, such as the shape of the images, the anatomical orientation, and the details of the source of the atlas</p></li>