jsdrf

Java library to validate SDRF file formats. The SDRF file format represent the sample to data information in proteomics experiments.

features

• Java data model to include in java application SDRF.
• Validation of sdrf files with proteomics rules.

How to use it:

java -jar jdsrf-{X.X.X}.jar --sdrf query_file.tsv --template HUMAN

Using the Java library with maven:

<dependency>
     <groupId>uk.ac.ebi.pride.sdrf</groupId>
     <artifactId>jsdrf</artifactId>
     <version>{version}</version>
</dependency>

How to cite

Perez-Riverol, Yasset, European Bioinformatics Community for Mass Spectrometry. "Towards a sample metadata standard in public proteomics repositories." Journal of Proteome Research (2020) Manuscript.

Dai, C., Füllgrabe, A., Pfeuffer, J. et al. A proteomics sample metadata representation for multiomics integration and big data analysis. Nat Commun 12, 5854 (2021) Manuscript