From bce53cae086866bb82cc9354c4716ddb7bb8be5d Mon Sep 17 00:00:00 2001
From: Ward Fisher <wfisher@ucar.edu>
Date: Tue, 24 Oct 2023 10:15:25 -0600
Subject: [PATCH 01/19] Add first script to try to embed cdash scripts into CI.

---
 .github/workflows/run_tests_cdash.yml | 358 ++++++++++++++++++++++++++
 1 file changed, 358 insertions(+)
 create mode 100644 .github/workflows/run_tests_cdash.yml

diff --git a/.github/workflows/run_tests_cdash.yml b/.github/workflows/run_tests_cdash.yml
new file mode 100644
index 0000000000..ce79c421a8
--- /dev/null
+++ b/.github/workflows/run_tests_cdash.yml
@@ -0,0 +1,358 @@
+###
+# Build hdf5 dependencies and cache them in a combined directory.
+###
+
+name: Run Ubuntu/Linux netCDF Tests with CDash
+
+on: [pull_request, workflow_dispatch]
+
+jobs:
+
+  build-deps-cdash:
+
+    runs-on: ubuntu-latest
+
+    strategy:
+      matrix:
+        hdf5: [ 1.10.8, 1.12.2, 1.14.0 ]
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Install System dependencies
+        shell: bash -l {0}
+        run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev doxygen openssl
+
+        ###
+        # Installing libhdf5
+        ###
+      - name: Cache libhdf5-${{ matrix.hdf5 }}
+        id: cache-hdf5
+        uses: actions/cache@v3
+        with:
+          path: ~/environments/${{ matrix.hdf5 }}
+          key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
+
+
+      - name: Build libhdf5-${{ matrix.hdf5 }}
+        if: steps.cache-hdf5.outputs.cache-hit != 'true'
+        run: |
+          set -x
+
+          wget https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.15/src/hdf-4.2.15.tar.bz2
+          tar -jxf hdf-4.2.15.tar.bz2
+          pushd hdf-4.2.15
+          ./configure --prefix=${HOME}/environments/${{ matrix.hdf5 }} --disable-static --enable-shared --disable-fortran --disable-netcdf --with-szlib --enable-hdf4-xdr
+          make -j
+          make install -j
+          popd
+
+          wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2
+          tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2
+          pushd hdf5-${{ matrix.hdf5 }}
+          ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} --enable-hl --with-szlib
+          make -j
+          make install -j
+          popd
+          
+
+  build-deps-parallel:
+
+    runs-on: ubuntu-latest
+
+    strategy:
+      matrix:
+        hdf5: [ 1.14.0 ]
+
+    steps:
+
+      - uses: actions/checkout@v3
+
+      - name: Install System dependencies
+        shell: bash -l {0}
+        run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev mpich libmpich-dev 
+
+        ###
+        # Installing libhdf5
+        ###
+      - name: Cache libhdf5-parallel-${{ matrix.hdf5 }}
+        id: cache-hdf5
+        uses: actions/cache@v3
+        with:
+          path: ~/environments/${{ matrix.hdf5 }}
+          key: hdf5-parallel-${{ runner.os }}-${{ matrix.hdf5 }}
+
+
+      - name: Build libhdf5-${{ matrix.hdf5 }}-pnetcdf-1.12.3
+        if: steps.cache-hdf5.outputs.cache-hit != 'true'
+        run: |
+          set -x
+
+          wget https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.15/src/hdf-4.2.15.tar.bz2
+          tar -jxf hdf-4.2.15.tar.bz2
+          pushd hdf-4.2.15
+          CC=mpicc ./configure --prefix=${HOME}/environments/${{ matrix.hdf5 }} --disable-static --enable-shared --disable-fortran --disable-netcdf --with-szlib --enable-parallel --enable-hdf4-xdr
+          make -j
+          make install -j
+          popd
+
+          wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2
+          tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2
+          pushd hdf5-${{ matrix.hdf5 }}
+          CC=mpicc ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} --enable-hl --with-szlib --enable-parallel
+          make -j
+          make install -j
+          popd
+          wget https://parallel-netcdf.github.io/Release/pnetcdf-1.12.3.tar.gz
+          tar -zxf pnetcdf-1.12.3.tar.gz
+          pushd pnetcdf-1.12.3
+          CC=mpicc ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} 
+          make -j
+          make install -j
+          popd
+          
+
+
+    needs: build-deps-parallel
+    runs-on: ubuntu-latest
+
+    strategy:
+      matrix:
+        hdf5: [ 1.14.0 ]
+    steps:
+
+      - uses: actions/checkout@v3
+
+      - name: Install System dependencies
+        shell: bash -l {0}
+        run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev mpich libmpich-dev 
+
+        ###
+        # Set Environmental Variables
+        ###
+
+      - run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}/include" >> $GITHUB_ENV
+      - run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
+      - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
+
+      - name: Fetch HDF Cache
+        id: cache-hdf
+        uses: actions/cache@v3
+        with:
+          path: ~/environments/${{ matrix.hdf5 }}
+          key: hdf5-parallel-${{ runner.os }}-${{ matrix.hdf5 }}
+
+      - name: Check Cache
+        shell: bash -l {0}
+        run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
+
+
+        ###
+        # Configure and build
+        ###
+
+      - name: Run autoconf
+        shell: bash -l {0}
+        run: autoreconf -if
+
+      - name: Configure
+        shell: bash -l {0}
+        run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} CC=mpicc ./configure --enable-hdf5 --enable-dap --disable-dap-remote-tests --enable-parallel-tests --enable-pnetcdf
+        if: ${{ success() }}
+
+      - name: Look at config.log if error
+        shell: bash -l {0}
+        run: cat config.log
+        if: ${{ failure() }}
+
+      - name: Print Summary
+        shell: bash -l {0}
+        run: cat libnetcdf.settings
+
+      - name: Build Library and Utilities
+        shell: bash -l {0}
+        run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} CC=mpicc make -j
+        if: ${{ success() }}
+
+      - name: Build Tests
+        shell: bash -l {0}
+        run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} CC=mpicc make check TESTS="" -j
+        if: ${{ success() }}
+
+      - name: Run Tests
+        shell: bash -l {0}
+        run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} CC=mpicc make check -j
+        if: ${{ success() }}
+
+
+
+
+    needs: [ nc-cmake-tests-oneoff-cdash, nc-ac-tests-oneoff-cdash, nc-cmake-tests-oneoff-parallel, nc-ac-tests-oneoff-parallel ]
+    runs-on: ubuntu-latest
+
+    strategy:
+      matrix:
+        hdf5: [1.10.8, 1.12.2, 1.14.0 ]
+        use_nc4: [ nc3, nc4 ]
+        use_dap: [ dap_off, dap_on ]
+        use_nczarr: [ nczarr_off, nczarr_on ]
+    steps:
+
+      - uses: actions/checkout@v3
+
+      - name: Install System dependencies
+        shell: bash -l {0}
+        run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev
+
+      ###
+      # Set Environmental Variables
+      ###
+
+      - run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}/include" >> $GITHUB_ENV
+      - run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
+      - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
+      - run: |
+          echo "ENABLE_HDF5=--disable-hdf5" >> $GITHUB_ENV
+        if: matrix.use_nc4 == 'nc3'
+      - run: |
+          echo "ENABLE_HDF5=--enable-hdf5" >> $GITHUB_ENV
+        if: matrix.use_nc4 == 'nc4'
+      - run: echo "ENABLE_DAP=--disable-dap" >> $GITHUB_ENV
+        if: matrix.use_dap == 'dap_off'
+      - run: echo "ENABLE_DAP=--enable-dap" >> $GITHUB_ENV
+        if: matrix.use_dap == 'dap_on'
+      - run: echo "ENABLE_NCZARR=--disable-nczarr" >> $GITHUB_ENV
+        if: matrix.use_nczarr == 'nczarr_off'
+      - run: echo "ENABLE_NCZARR=--enable-nczarr" >> $GITHUB_ENV
+        if: matrix.use_nczarr == 'nczarr_on'
+
+      ###
+      # Fetch Cache
+      ###
+
+      - name: Fetch HDF Cache
+        id: cache-hdf
+        uses: actions/cache@v3
+        with:
+          path: ~/environments/${{ matrix.hdf5 }}
+          key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
+
+      - name: Check Cache
+        shell: bash -l {0}
+        run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
+
+      ###
+      # Configure and build
+      ###
+
+      - name: Run autoconf
+        shell: bash -l {0}
+        run: autoreconf -if
+
+      - name: Configure
+        shell: bash -l {0}
+        run: |
+          current_directory="$(pwd)"
+          mkdir ../build
+          cd ../build && CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} "${current_directory}/configure" ${ENABLE_HDF5} ${ENABLE_DAP} ${ENABLE_NCZARR}
+        if: ${{ success() }}
+
+      - name: Look at config.log if error
+        shell: bash -l {0}
+        run: cd ../build && cat config.log
+        if: ${{ failure() }}
+
+      - name: Print Summary
+        shell: bash -l {0}
+        run: cd ../build && cat libnetcdf.settings
+
+      - name: Build Library and Utilities
+        shell: bash -l {0}
+        run: |
+          cd ../build && CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j
+        if: ${{ success() }}
+
+      - name: Build Tests
+        shell: bash -l {0}
+        run: |
+          cd ../build && CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check TESTS="" -j
+        if: ${{ success() }}
+
+      - name: Run Tests
+        shell: bash -l {0}
+        run: |
+          cd ../build && CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check -j
+        if: ${{ success() }}
+
+  nc-cmake:
+
+    needs: build-deps-cdash
+    runs-on: ubuntu-latest
+
+    strategy:
+      matrix:
+        hdf5: [ 1.10.8, 1.12.2, 1.14.0 ]
+        use_nc4: [ nc3, nc4 ]
+        use_dap: [ dap_off, dap_on ]
+        use_nczarr: [ nczarr_off, nczarr_on ]
+    steps:
+
+      - uses: actions/checkout@v3
+
+      - name: Install System dependencies
+        shell: bash -l {0}
+        run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev
+
+      ###
+      # Set Environmental Variables
+      ###
+
+      - run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV
+      - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
+      - run: |
+          echo "ENABLE_HDF5=OFF" >> $GITHUB_ENV
+        if: matrix.use_nc4 == 'nc3'
+      - run: |
+          echo "ENABLE_HDF5=ON" >> $GITHUB_ENV
+        if: matrix.use_nc4 == 'nc4'
+      - run: echo "ENABLE_DAP=OFF" >> $GITHUB_ENV
+        if: matrix.use_dap == 'dap_off'
+      - run: echo "ENABLE_DAP=ON" >> $GITHUB_ENV
+        if: matrix.use_dap == 'dap_on'
+      - run: echo "ENABLE_NCZARR=OFF" >> $GITHUB_ENV
+        if: matrix.use_nczarr == 'nczarr_off'
+      - run: echo "ENABLE_NCZARR=ON" >> $GITHUB_ENV
+        if: matrix.use_nczarr == 'nczarr_on'
+      - run: echo "CTEST_OUTPUT_ON_FAILURE=1" >> $GITHUB_ENV
+
+      ###
+      # Fetch Cache
+      ###
+
+      - name: Fetch HDF Cache
+        id: cache-hdf5
+        uses: actions/cache@v3
+        with:
+          path: ~/environments/${{ matrix.hdf5 }}
+          key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
+
+      - name: Check Cache
+        shell: bash -l {0}
+        run: ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
+
+      ###
+      # Run CTest Serial Script
+      ###
+      - name: Run ctest serial script
+        shell: bash -l {0}
+        run: |
+          mkdir build
+          cd build
+          LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -V -S ../ctest_scripts/ctest_serial.ctest
+
+      - name: Verbose Output if CTest Failure
+        shell: bash -l {0}
+        run: |
+          cd build
+          LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 --rerun-failed --output-on-failure -VV
+        if: ${{ failure() }}

From df5261ce0cb71d68788c7f31f99f2d087303c32b Mon Sep 17 00:00:00 2001
From: Ward Fisher <wfisher@ucar.edu>
Date: Tue, 24 Oct 2023 10:17:13 -0600
Subject: [PATCH 02/19] Correct issue with file.

---
 .github/workflows/run_tests_cdash.yml | 230 +-------------------------
 1 file changed, 1 insertion(+), 229 deletions(-)

diff --git a/.github/workflows/run_tests_cdash.yml b/.github/workflows/run_tests_cdash.yml
index ce79c421a8..8b19810c0a 100644
--- a/.github/workflows/run_tests_cdash.yml
+++ b/.github/workflows/run_tests_cdash.yml
@@ -110,236 +110,8 @@ jobs:
           make -j
           make install -j
           popd
-          
-
-
-    needs: build-deps-parallel
-    runs-on: ubuntu-latest
-
-    strategy:
-      matrix:
-        hdf5: [ 1.14.0 ]
-    steps:
-
-      - uses: actions/checkout@v3
-
-      - name: Install System dependencies
-        shell: bash -l {0}
-        run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev mpich libmpich-dev 
-
-        ###
-        # Set Environmental Variables
-        ###
-
-      - run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}/include" >> $GITHUB_ENV
-      - run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
-      - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
-
-      - name: Fetch HDF Cache
-        id: cache-hdf
-        uses: actions/cache@v3
-        with:
-          path: ~/environments/${{ matrix.hdf5 }}
-          key: hdf5-parallel-${{ runner.os }}-${{ matrix.hdf5 }}
-
-      - name: Check Cache
-        shell: bash -l {0}
-        run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
-
-
-        ###
-        # Configure and build
-        ###
-
-      - name: Run autoconf
-        shell: bash -l {0}
-        run: autoreconf -if
-
-      - name: Configure
-        shell: bash -l {0}
-        run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} CC=mpicc ./configure --enable-hdf5 --enable-dap --disable-dap-remote-tests --enable-parallel-tests --enable-pnetcdf
-        if: ${{ success() }}
-
-      - name: Look at config.log if error
-        shell: bash -l {0}
-        run: cat config.log
-        if: ${{ failure() }}
-
-      - name: Print Summary
-        shell: bash -l {0}
-        run: cat libnetcdf.settings
-
-      - name: Build Library and Utilities
-        shell: bash -l {0}
-        run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} CC=mpicc make -j
-        if: ${{ success() }}
-
-      - name: Build Tests
-        shell: bash -l {0}
-        run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} CC=mpicc make check TESTS="" -j
-        if: ${{ success() }}
-
-      - name: Run Tests
-        shell: bash -l {0}
-        run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} CC=mpicc make check -j
-        if: ${{ success() }}
-
-
-
-
-    needs: [ nc-cmake-tests-oneoff-cdash, nc-ac-tests-oneoff-cdash, nc-cmake-tests-oneoff-parallel, nc-ac-tests-oneoff-parallel ]
-    runs-on: ubuntu-latest
-
-    strategy:
-      matrix:
-        hdf5: [1.10.8, 1.12.2, 1.14.0 ]
-        use_nc4: [ nc3, nc4 ]
-        use_dap: [ dap_off, dap_on ]
-        use_nczarr: [ nczarr_off, nczarr_on ]
-    steps:
-
-      - uses: actions/checkout@v3
-
-      - name: Install System dependencies
-        shell: bash -l {0}
-        run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev
-
-      ###
-      # Set Environmental Variables
-      ###
-
-      - run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}/include" >> $GITHUB_ENV
-      - run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
-      - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
-      - run: |
-          echo "ENABLE_HDF5=--disable-hdf5" >> $GITHUB_ENV
-        if: matrix.use_nc4 == 'nc3'
-      - run: |
-          echo "ENABLE_HDF5=--enable-hdf5" >> $GITHUB_ENV
-        if: matrix.use_nc4 == 'nc4'
-      - run: echo "ENABLE_DAP=--disable-dap" >> $GITHUB_ENV
-        if: matrix.use_dap == 'dap_off'
-      - run: echo "ENABLE_DAP=--enable-dap" >> $GITHUB_ENV
-        if: matrix.use_dap == 'dap_on'
-      - run: echo "ENABLE_NCZARR=--disable-nczarr" >> $GITHUB_ENV
-        if: matrix.use_nczarr == 'nczarr_off'
-      - run: echo "ENABLE_NCZARR=--enable-nczarr" >> $GITHUB_ENV
-        if: matrix.use_nczarr == 'nczarr_on'
-
-      ###
-      # Fetch Cache
-      ###
-
-      - name: Fetch HDF Cache
-        id: cache-hdf
-        uses: actions/cache@v3
-        with:
-          path: ~/environments/${{ matrix.hdf5 }}
-          key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
-
-      - name: Check Cache
-        shell: bash -l {0}
-        run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
-
-      ###
-      # Configure and build
-      ###
-
-      - name: Run autoconf
-        shell: bash -l {0}
-        run: autoreconf -if
-
-      - name: Configure
-        shell: bash -l {0}
-        run: |
-          current_directory="$(pwd)"
-          mkdir ../build
-          cd ../build && CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} "${current_directory}/configure" ${ENABLE_HDF5} ${ENABLE_DAP} ${ENABLE_NCZARR}
-        if: ${{ success() }}
-
-      - name: Look at config.log if error
-        shell: bash -l {0}
-        run: cd ../build && cat config.log
-        if: ${{ failure() }}
-
-      - name: Print Summary
-        shell: bash -l {0}
-        run: cd ../build && cat libnetcdf.settings
-
-      - name: Build Library and Utilities
-        shell: bash -l {0}
-        run: |
-          cd ../build && CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j
-        if: ${{ success() }}
-
-      - name: Build Tests
-        shell: bash -l {0}
-        run: |
-          cd ../build && CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check TESTS="" -j
-        if: ${{ success() }}
-
-      - name: Run Tests
-        shell: bash -l {0}
-        run: |
-          cd ../build && CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check -j
-        if: ${{ success() }}
-
-  nc-cmake:
-
-    needs: build-deps-cdash
-    runs-on: ubuntu-latest
-
-    strategy:
-      matrix:
-        hdf5: [ 1.10.8, 1.12.2, 1.14.0 ]
-        use_nc4: [ nc3, nc4 ]
-        use_dap: [ dap_off, dap_on ]
-        use_nczarr: [ nczarr_off, nczarr_on ]
-    steps:
-
-      - uses: actions/checkout@v3
-
-      - name: Install System dependencies
-        shell: bash -l {0}
-        run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev
-
-      ###
-      # Set Environmental Variables
-      ###
-
-      - run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV
-      - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
-      - run: |
-          echo "ENABLE_HDF5=OFF" >> $GITHUB_ENV
-        if: matrix.use_nc4 == 'nc3'
-      - run: |
-          echo "ENABLE_HDF5=ON" >> $GITHUB_ENV
-        if: matrix.use_nc4 == 'nc4'
-      - run: echo "ENABLE_DAP=OFF" >> $GITHUB_ENV
-        if: matrix.use_dap == 'dap_off'
-      - run: echo "ENABLE_DAP=ON" >> $GITHUB_ENV
-        if: matrix.use_dap == 'dap_on'
-      - run: echo "ENABLE_NCZARR=OFF" >> $GITHUB_ENV
-        if: matrix.use_nczarr == 'nczarr_off'
-      - run: echo "ENABLE_NCZARR=ON" >> $GITHUB_ENV
-        if: matrix.use_nczarr == 'nczarr_on'
-      - run: echo "CTEST_OUTPUT_ON_FAILURE=1" >> $GITHUB_ENV
-
-      ###
-      # Fetch Cache
-      ###
-
-      - name: Fetch HDF Cache
-        id: cache-hdf5
-        uses: actions/cache@v3
-        with:
-          path: ~/environments/${{ matrix.hdf5 }}
-          key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
-
-      - name: Check Cache
-        shell: bash -l {0}
-        run: ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
 
+          
       ###
       # Run CTest Serial Script
       ###

From b41c33805aba64ce636f01e10b9db135105b2f00 Mon Sep 17 00:00:00 2001
From: Ward Fisher <wfisher@ucar.edu>
Date: Tue, 24 Oct 2023 10:18:58 -0600
Subject: [PATCH 03/19] Update cdash script file.

---
 .github/workflows/run_tests_cdash.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/run_tests_cdash.yml b/.github/workflows/run_tests_cdash.yml
index 8b19810c0a..7d11008b8a 100644
--- a/.github/workflows/run_tests_cdash.yml
+++ b/.github/workflows/run_tests_cdash.yml
@@ -2,7 +2,7 @@
 # Build hdf5 dependencies and cache them in a combined directory.
 ###
 
-name: Run Ubuntu/Linux netCDF Tests with CDash
+name: Run CDash Ubuntu/Linux netCDF Tests
 
 on: [pull_request, workflow_dispatch]
 
@@ -111,7 +111,7 @@ jobs:
           make install -j
           popd
 
-          
+
       ###
       # Run CTest Serial Script
       ###

From 7d9baced0eafc5429778a3160bec5118c82c2632 Mon Sep 17 00:00:00 2001
From: Ward Fisher <wfisher@ucar.edu>
Date: Tue, 24 Oct 2023 10:28:51 -0600
Subject: [PATCH 04/19] Correct issue with test file.

---
 .github/workflows/run_tests_cdash.yml | 54 +++++++++++++++++++++++++++
 1 file changed, 54 insertions(+)

diff --git a/.github/workflows/run_tests_cdash.yml b/.github/workflows/run_tests_cdash.yml
index 7d11008b8a..7da75455a4 100644
--- a/.github/workflows/run_tests_cdash.yml
+++ b/.github/workflows/run_tests_cdash.yml
@@ -115,6 +115,60 @@ jobs:
       ###
       # Run CTest Serial Script
       ###
+  nc-ctest-serial:
+      needs: build-deps-cdash
+      runs-on: ubuntu-latest
+      environment: CDashCI
+      
+      strategy:
+        matrix:
+          hdf5: [ 1.10.8, 1.12.2, 1.14.0 ]
+          use_nc4: [ nc3, nc4 ]
+          use_dap: [ dap_off, dap_on ]
+          use_nczarr: [ nczarr_off, nczarr_on ]
+      steps:          
+      - uses: actions/checkout@v3
+
+      - name: Install System dependencies
+        shell: bash -l {0}
+        run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev
+
+      ###
+      # Set Environmental Variables
+      ###
+
+      - run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV
+      - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
+      - run: |
+          echo "ENABLE_HDF5=OFF" >> $GITHUB_ENV
+        if: matrix.use_nc4 == 'nc3'
+      - run: |
+          echo "ENABLE_HDF5=ON" >> $GITHUB_ENV
+        if: matrix.use_nc4 == 'nc4'
+      - run: echo "ENABLE_DAP=OFF" >> $GITHUB_ENV
+        if: matrix.use_dap == 'dap_off'
+      - run: echo "ENABLE_DAP=ON" >> $GITHUB_ENV
+        if: matrix.use_dap == 'dap_on'
+      - run: echo "ENABLE_NCZARR=OFF" >> $GITHUB_ENV
+        if: matrix.use_nczarr == 'nczarr_off'
+      - run: echo "ENABLE_NCZARR=ON" >> $GITHUB_ENV
+        if: matrix.use_nczarr == 'nczarr_on'
+      - run: echo "CTEST_OUTPUT_ON_FAILURE=1" >> $GITHUB_ENV
+
+      ###
+      # Fetch Cache
+      ###
+
+      - name: Fetch HDF Cache
+        id: cache-hdf5
+        uses: actions/cache@v3
+        with:
+          path: ~/environments/${{ matrix.hdf5 }}
+          key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
+
+      - name: Check Cache
+        shell: bash -l {0}
+        run: ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
       - name: Run ctest serial script
         shell: bash -l {0}
         run: |

From 7a28aefa5264d6c5d0725ee53ec7a0a8b065e74b Mon Sep 17 00:00:00 2001
From: Ward Fisher <wfisher@ucar.edu>
Date: Tue, 24 Oct 2023 10:32:31 -0600
Subject: [PATCH 05/19] Reduce cdash/ctest-based script matrix.

---
 .github/workflows/run_tests_cdash.yml | 19 +------------------
 1 file changed, 1 insertion(+), 18 deletions(-)

diff --git a/.github/workflows/run_tests_cdash.yml b/.github/workflows/run_tests_cdash.yml
index 7da75455a4..5e922803cf 100644
--- a/.github/workflows/run_tests_cdash.yml
+++ b/.github/workflows/run_tests_cdash.yml
@@ -123,9 +123,6 @@ jobs:
       strategy:
         matrix:
           hdf5: [ 1.10.8, 1.12.2, 1.14.0 ]
-          use_nc4: [ nc3, nc4 ]
-          use_dap: [ dap_off, dap_on ]
-          use_nczarr: [ nczarr_off, nczarr_on ]
       steps:          
       - uses: actions/checkout@v3
 
@@ -139,20 +136,6 @@ jobs:
 
       - run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV
       - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
-      - run: |
-          echo "ENABLE_HDF5=OFF" >> $GITHUB_ENV
-        if: matrix.use_nc4 == 'nc3'
-      - run: |
-          echo "ENABLE_HDF5=ON" >> $GITHUB_ENV
-        if: matrix.use_nc4 == 'nc4'
-      - run: echo "ENABLE_DAP=OFF" >> $GITHUB_ENV
-        if: matrix.use_dap == 'dap_off'
-      - run: echo "ENABLE_DAP=ON" >> $GITHUB_ENV
-        if: matrix.use_dap == 'dap_on'
-      - run: echo "ENABLE_NCZARR=OFF" >> $GITHUB_ENV
-        if: matrix.use_nczarr == 'nczarr_off'
-      - run: echo "ENABLE_NCZARR=ON" >> $GITHUB_ENV
-        if: matrix.use_nczarr == 'nczarr_on'
       - run: echo "CTEST_OUTPUT_ON_FAILURE=1" >> $GITHUB_ENV
 
       ###
@@ -174,7 +157,7 @@ jobs:
         run: |
           mkdir build
           cd build
-          LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -V -S ../ctest_scripts/ctest_serial.ctest
+          LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 -V -S ../ctest_scripts/ctest_serial.ctest
 
       - name: Verbose Output if CTest Failure
         shell: bash -l {0}

From 7ab20391d2b10dc7bb9c596b7ce02d47713ee321 Mon Sep 17 00:00:00 2001
From: Ward Fisher <wfisher@ucar.edu>
Date: Tue, 24 Oct 2023 10:39:11 -0600
Subject: [PATCH 06/19] Add coverage testing to a specific test.

---
 ctest_scripts/ctest_serial_coverage.ctest | 48 +++++++++++++++++++++++
 1 file changed, 48 insertions(+)
 create mode 100644 ctest_scripts/ctest_serial_coverage.ctest

diff --git a/ctest_scripts/ctest_serial_coverage.ctest b/ctest_scripts/ctest_serial_coverage.ctest
new file mode 100644
index 0000000000..522ca0b8c8
--- /dev/null
+++ b/ctest_scripts/ctest_serial_coverage.ctest
@@ -0,0 +1,48 @@
+###
+# Standard CTest Script for testing netCDF.
+# Requires a CDash Token.
+#
+# Set the CDASH_TOKEN environmental variable.
+#
+###
+
+SET(CTEST_SOURCE_DIRECTORY "..")
+SET(CTEST_BINARY_DIRECTORY ".")
+
+set(CDASH_TOKEN $ENV{CDASH_TOKEN})
+MESSAGE("Using cdash token: ${CDASH_TOKEN}")
+
+
+SITE_NAME(local_site_name)
+set(CTEST_SITE ${local_site_name})
+
+set(CTEST_BUILD_CONFIGURATION "Profiling")
+set(CTEST_CMAKE_GENERATOR "Unix Makefiles")
+set(CTEST_BUILD_NAME "default")
+set(CTEST_BUILD_CONFIGURATION "Profiling")
+set(CTEST_DROP_METHOD "https")
+set(CTEST_DROP_SITE_CDASH TRUE)
+set(CTEST_PROJECT_NAME netcdf-c)
+
+find_program(CMAKE_COMMAND cmake)
+find_program(CTEST_GIT_COMMAND NAMES git)
+find_program(CTEST_COVERAGE_COMMAND NAMES gcov)
+find_program(CTEST_MEMORYCHECK_COMMAND NAMES valgrind)
+
+set(CTEST_BUILD_OPTIONS "-DENABLE_COVERAGE_TESTS=TRUE -DENABLE_ERANGE_FILL=TRUE -DENABLE_LOGGING=TRUE -DENABLE_BYTERANGE=TRUE -DENABLE_LARGE_FILE_TESTS=FALSE")
+
+
+set(CTEST_DROP_METHOD https)
+set(CTEST_DROP_SITE "cdash.unidata.ucar.edu:443")
+set(CTEST_DROP_LOCATION "/submit.php?project=netcdf-c")
+
+set(CTEST_CONFIGURE_COMMAND "${CMAKE_COMMAND} -DCMAKE_BUILD_TYPE:STRING=${CTEST_BUILD_CONFIGURATION} ${CTEST_BUILD_OPTIONS} ${CTEST_SOURCE_DIRECTORY}")
+
+ctest_start("Experimental")
+ctest_configure()
+ctest_build()
+ctest_test()
+ctest_coverage()
+if (NOT "${CDASH_TOKEN}" STREQUAL "")
+   ctest_submit(HTTPHEADER "Authorization: Bearer ${CDASH_TOKEN}")
+endif()

From 794ff5adad6cd2233645b8393d83fbb85e1c2ce5 Mon Sep 17 00:00:00 2001
From: Ward Fisher <wfisher@ucar.edu>
Date: Tue, 24 Oct 2023 10:39:44 -0600
Subject: [PATCH 07/19] Turn off coverage testing in ctest_serial.ctest.

---
 ctest_scripts/ctest_serial.ctest | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/ctest_scripts/ctest_serial.ctest b/ctest_scripts/ctest_serial.ctest
index 522ca0b8c8..cdcb2912df 100644
--- a/ctest_scripts/ctest_serial.ctest
+++ b/ctest_scripts/ctest_serial.ctest
@@ -29,7 +29,7 @@ find_program(CTEST_GIT_COMMAND NAMES git)
 find_program(CTEST_COVERAGE_COMMAND NAMES gcov)
 find_program(CTEST_MEMORYCHECK_COMMAND NAMES valgrind)
 
-set(CTEST_BUILD_OPTIONS "-DENABLE_COVERAGE_TESTS=TRUE -DENABLE_ERANGE_FILL=TRUE -DENABLE_LOGGING=TRUE -DENABLE_BYTERANGE=TRUE -DENABLE_LARGE_FILE_TESTS=FALSE")
+set(CTEST_BUILD_OPTIONS "-DENABLE_COVERAGE_TESTS=FALSE -DENABLE_ERANGE_FILL=TRUE -DENABLE_LOGGING=TRUE -DENABLE_BYTERANGE=TRUE -DENABLE_LARGE_FILE_TESTS=FALSE")
 
 
 set(CTEST_DROP_METHOD https)
@@ -42,7 +42,6 @@ ctest_start("Experimental")
 ctest_configure()
 ctest_build()
 ctest_test()
-ctest_coverage()
 if (NOT "${CDASH_TOKEN}" STREQUAL "")
    ctest_submit(HTTPHEADER "Authorization: Bearer ${CDASH_TOKEN}")
 endif()

From 4e7a864c2371a43cc5b66c9f2d489aad3930ea95 Mon Sep 17 00:00:00 2001
From: Ward Fisher <wfisher@ucar.edu>
Date: Tue, 24 Oct 2023 10:48:51 -0600
Subject: [PATCH 08/19] Working on automating cdash access on github.

---
 .github/workflows/run_tests_cdash.yml | 3 +++
 ctest_scripts/ctest_serial.ctest      | 7 +++++++
 2 files changed, 10 insertions(+)

diff --git a/.github/workflows/run_tests_cdash.yml b/.github/workflows/run_tests_cdash.yml
index 5e922803cf..27042ee01e 100644
--- a/.github/workflows/run_tests_cdash.yml
+++ b/.github/workflows/run_tests_cdash.yml
@@ -152,7 +152,10 @@ jobs:
       - name: Check Cache
         shell: bash -l {0}
         run: ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
+
       - name: Run ctest serial script
+        with: # Access the CDash TOken
+          CDASH_TOKEN: ${{ secrets.CDASH_TOKEN }}
         shell: bash -l {0}
         run: |
           mkdir build
diff --git a/ctest_scripts/ctest_serial.ctest b/ctest_scripts/ctest_serial.ctest
index cdcb2912df..9a5d60cc5d 100644
--- a/ctest_scripts/ctest_serial.ctest
+++ b/ctest_scripts/ctest_serial.ctest
@@ -10,6 +10,13 @@ SET(CTEST_SOURCE_DIRECTORY "..")
 SET(CTEST_BINARY_DIRECTORY ".")
 
 set(CDASH_TOKEN $ENV{CDASH_TOKEN})
+
+IF (CDASH_TOKEN)
+ MESSAGE("CDASH TOKEN FOUND")
+ELSE (CDASH_TOKEN)
+ MESSAGE("NO CDASH TOKEN FOUND")
+ENDIF (CDASH_TOKEN)
+ 
 MESSAGE("Using cdash token: ${CDASH_TOKEN}")
 
 

From 88ecadfdb0476336777ab97ae4dcee5221253f52 Mon Sep 17 00:00:00 2001
From: Ward Fisher <wfisher@ucar.edu>
Date: Tue, 24 Oct 2023 10:51:20 -0600
Subject: [PATCH 09/19] Adjust syntax.

---
 .github/workflows/run_tests_cdash.yml | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/run_tests_cdash.yml b/.github/workflows/run_tests_cdash.yml
index 27042ee01e..bd7c8e3aa4 100644
--- a/.github/workflows/run_tests_cdash.yml
+++ b/.github/workflows/run_tests_cdash.yml
@@ -123,6 +123,7 @@ jobs:
       strategy:
         matrix:
           hdf5: [ 1.10.8, 1.12.2, 1.14.0 ]
+     
       steps:          
       - uses: actions/checkout@v3
 
@@ -154,9 +155,9 @@ jobs:
         run: ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
 
       - name: Run ctest serial script
-        with: # Access the CDash TOken
-          CDASH_TOKEN: ${{ secrets.CDASH_TOKEN }}
         shell: bash -l {0}
+        env:
+          CDASH_TOKEN: ${{ secrets.CDASH_TOKEN }}
         run: |
           mkdir build
           cd build

From 74df474ac71a22834e0405530da8bf5e72ccf166 Mon Sep 17 00:00:00 2001
From: Ward Fisher <wfisher@ucar.edu>
Date: Tue, 24 Oct 2023 10:55:57 -0600
Subject: [PATCH 10/19] Adjust github action config file syntax.

---
 .github/workflows/run_tests_cdash.yml | 2 +-
 ctest_scripts/ctest_serial.ctest      | 3 ---
 2 files changed, 1 insertion(+), 4 deletions(-)

diff --git a/.github/workflows/run_tests_cdash.yml b/.github/workflows/run_tests_cdash.yml
index bd7c8e3aa4..2b553de846 100644
--- a/.github/workflows/run_tests_cdash.yml
+++ b/.github/workflows/run_tests_cdash.yml
@@ -156,7 +156,7 @@ jobs:
 
       - name: Run ctest serial script
         shell: bash -l {0}
-        env:
+        with:
           CDASH_TOKEN: ${{ secrets.CDASH_TOKEN }}
         run: |
           mkdir build
diff --git a/ctest_scripts/ctest_serial.ctest b/ctest_scripts/ctest_serial.ctest
index 9a5d60cc5d..71a6eb6969 100644
--- a/ctest_scripts/ctest_serial.ctest
+++ b/ctest_scripts/ctest_serial.ctest
@@ -17,9 +17,6 @@ ELSE (CDASH_TOKEN)
  MESSAGE("NO CDASH TOKEN FOUND")
 ENDIF (CDASH_TOKEN)
  
-MESSAGE("Using cdash token: ${CDASH_TOKEN}")
-
-
 SITE_NAME(local_site_name)
 set(CTEST_SITE ${local_site_name})
 

From 461569509157d52ac517f7e5f1bb23d44fbd0ba7 Mon Sep 17 00:00:00 2001
From: Ward Fisher <wfisher@ucar.edu>
Date: Tue, 24 Oct 2023 11:00:17 -0600
Subject: [PATCH 11/19] Playing around trying to nail down syntax for accessing
 secrets in Github Actions.

---
 .github/workflows/run_tests_cdash.yml | 80 +++++++++++++--------------
 1 file changed, 40 insertions(+), 40 deletions(-)

diff --git a/.github/workflows/run_tests_cdash.yml b/.github/workflows/run_tests_cdash.yml
index 2b553de846..f11f13af3d 100644
--- a/.github/workflows/run_tests_cdash.yml
+++ b/.github/workflows/run_tests_cdash.yml
@@ -125,47 +125,47 @@ jobs:
           hdf5: [ 1.10.8, 1.12.2, 1.14.0 ]
      
       steps:          
-      - uses: actions/checkout@v3
-
-      - name: Install System dependencies
-        shell: bash -l {0}
-        run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev
-
-      ###
-      # Set Environmental Variables
-      ###
+        - uses: actions/checkout@v3
+          with:
+            CDASH_TOKEN: ${{ secrets.CDASH_TOKEN }}
+        
+        - name: Install System dependencies
+          shell: bash -l {0}
+          run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev
 
-      - run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV
-      - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
-      - run: echo "CTEST_OUTPUT_ON_FAILURE=1" >> $GITHUB_ENV
-
-      ###
-      # Fetch Cache
-      ###
-
-      - name: Fetch HDF Cache
-        id: cache-hdf5
-        uses: actions/cache@v3
-        with:
-          path: ~/environments/${{ matrix.hdf5 }}
-          key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
+        ###
+        # Set Environmental Variables
+        ###
 
-      - name: Check Cache
-        shell: bash -l {0}
-        run: ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
+        - run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV
+        - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
+        - run: echo "CTEST_OUTPUT_ON_FAILURE=1" >> $GITHUB_ENV
 
-      - name: Run ctest serial script
-        shell: bash -l {0}
-        with:
-          CDASH_TOKEN: ${{ secrets.CDASH_TOKEN }}
-        run: |
-          mkdir build
-          cd build
-          LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 -V -S ../ctest_scripts/ctest_serial.ctest
+        ###
+        # Fetch Cache
+        ###
 
-      - name: Verbose Output if CTest Failure
-        shell: bash -l {0}
-        run: |
-          cd build
-          LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 --rerun-failed --output-on-failure -VV
-        if: ${{ failure() }}
+        - name: Fetch HDF Cache
+          id: cache-hdf5
+          uses: actions/cache@v3
+          with:
+            path: ~/environments/${{ matrix.hdf5 }}
+            key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
+
+        - name: Check Cache
+          shell: bash -l {0}
+          run: ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
+
+        - name: Run ctest serial script
+          shell: bash -l {0}
+          run: |
+            mkdir build
+            cd build
+            LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 -V -S ../ctest_scripts/ctest_serial.ctest
+
+        - name: Verbose Output if CTest Failure
+          shell: bash -l {0}
+          run: |
+            cd build
+            LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 --rerun-failed --output-on-failure -VV
+          if: ${{ failure() }}

From dcad99082dbdc113694c7bf8467414a858d53abd Mon Sep 17 00:00:00 2001
From: Ward Fisher <wfisher@ucar.edu>
Date: Tue, 24 Oct 2023 11:13:04 -0600
Subject: [PATCH 12/19] Remove sensitive info being sent to standard output
 when using ctest scripts.

---
 CMakeLists.txt                            | 4 ++--
 ctest_scripts/ctest_mpicc.ctest           | 6 +++++-
 ctest_scripts/ctest_serial_coverage.ctest | 6 +++++-
 ctest_scripts/ctest_serial_dap.ctest      | 6 +++++-
 4 files changed, 17 insertions(+), 5 deletions(-)

diff --git a/CMakeLists.txt b/CMakeLists.txt
index 0191f1454c..6fa02dcd6a 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -267,8 +267,8 @@ IF(CMAKE_COMPILER_IS_GNUCC OR APPLE)
 
   # Coverage tests need to have optimization turned off.
   IF(ENABLE_COVERAGE_TESTS)
-    SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -g -O0 -fprofile-arcs -ftest-coverage")
-    SET(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -fprofile-arcs -ftest-coverage")
+    SET(CMAKE_CXX_FLAGS "${CMAKE_C_FLAGS} -g -O0 -coverage -fprofile-arcs -ftest-coverage")
+    SET(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -fprofile-arcs")
     MESSAGE(STATUS "Coverage Tests: On.")
   ENDIF()
 
diff --git a/ctest_scripts/ctest_mpicc.ctest b/ctest_scripts/ctest_mpicc.ctest
index 9bca2038d8..617ea49a22 100644
--- a/ctest_scripts/ctest_mpicc.ctest
+++ b/ctest_scripts/ctest_mpicc.ctest
@@ -10,7 +10,11 @@ SET(CTEST_SOURCE_DIRECTORY "..")
 SET(CTEST_BINARY_DIRECTORY ".")
 
 set(CDASH_TOKEN $ENV{CDASH_TOKEN})
-MESSAGE("Using cdash token: ${CDASH_TOKEN}")
+IF (CDASH_TOKEN)
+ MESSAGE("CDASH TOKEN FOUND")
+ELSE (CDASH_TOKEN)
+ MESSAGE("NO CDASH TOKEN FOUND")
+ENDIF (CDASH_TOKEN)
 
 
 SITE_NAME(local_site_name)
diff --git a/ctest_scripts/ctest_serial_coverage.ctest b/ctest_scripts/ctest_serial_coverage.ctest
index 522ca0b8c8..9b8f90a201 100644
--- a/ctest_scripts/ctest_serial_coverage.ctest
+++ b/ctest_scripts/ctest_serial_coverage.ctest
@@ -10,7 +10,11 @@ SET(CTEST_SOURCE_DIRECTORY "..")
 SET(CTEST_BINARY_DIRECTORY ".")
 
 set(CDASH_TOKEN $ENV{CDASH_TOKEN})
-MESSAGE("Using cdash token: ${CDASH_TOKEN}")
+IF (CDASH_TOKEN)
+ MESSAGE("CDASH TOKEN FOUND")
+ELSE (CDASH_TOKEN)
+ MESSAGE("NO CDASH TOKEN FOUND")
+ENDIF (CDASH_TOKEN)
 
 
 SITE_NAME(local_site_name)
diff --git a/ctest_scripts/ctest_serial_dap.ctest b/ctest_scripts/ctest_serial_dap.ctest
index 9ea3333459..80fe31264d 100644
--- a/ctest_scripts/ctest_serial_dap.ctest
+++ b/ctest_scripts/ctest_serial_dap.ctest
@@ -10,7 +10,11 @@ SET(CTEST_SOURCE_DIRECTORY "..")
 SET(CTEST_BINARY_DIRECTORY ".")
 
 set(CDASH_TOKEN $ENV{CDASH_TOKEN})
-MESSAGE("Using cdash token: ${CDASH_TOKEN}")
+IF (CDASH_TOKEN)
+ MESSAGE("CDASH TOKEN FOUND")
+ELSE (CDASH_TOKEN)
+ MESSAGE("NO CDASH TOKEN FOUND")
+ENDIF (CDASH_TOKEN)
 
 
 SITE_NAME(local_site_name)

From ee9c9d91aa1ab54968ec01d00899d0aad82b2c21 Mon Sep 17 00:00:00 2001
From: Ward Fisher <wfisher@ucar.edu>
Date: Tue, 24 Oct 2023 11:25:02 -0600
Subject: [PATCH 13/19] Try a different syntax.

---
 .github/workflows/run_tests_cdash.yml | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/.github/workflows/run_tests_cdash.yml b/.github/workflows/run_tests_cdash.yml
index f11f13af3d..5caf899421 100644
--- a/.github/workflows/run_tests_cdash.yml
+++ b/.github/workflows/run_tests_cdash.yml
@@ -128,6 +128,8 @@ jobs:
         - uses: actions/checkout@v3
           with:
             CDASH_TOKEN: ${{ secrets.CDASH_TOKEN }}
+          env:
+            CDASH_TOKEN: ${{ secrets.CDASH_TOKEN }}
         
         - name: Install System dependencies
           shell: bash -l {0}
@@ -158,6 +160,8 @@ jobs:
 
         - name: Run ctest serial script
           shell: bash -l {0}
+          env: 
+            CDASH_TOKEN: ${{ secrets.CDASH_TOKEN }}
           run: |
             mkdir build
             cd build

From 4483760d3267d5da944c4080e9da2ad43e8f58da Mon Sep 17 00:00:00 2001
From: Ward Fisher <wfisher@ucar.edu>
Date: Tue, 24 Oct 2023 11:30:56 -0600
Subject: [PATCH 14/19] Adjust workflow secrets syntax.

---
 .github/workflows/run_tests_cdash.yml | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/.github/workflows/run_tests_cdash.yml b/.github/workflows/run_tests_cdash.yml
index 5caf899421..927f10a657 100644
--- a/.github/workflows/run_tests_cdash.yml
+++ b/.github/workflows/run_tests_cdash.yml
@@ -5,6 +5,11 @@
 name: Run CDash Ubuntu/Linux netCDF Tests
 
 on: [pull_request, workflow_dispatch]
+  workflow_call:
+    secrets:
+      CDASH_TOKEN:
+        description: 'A token required to access the cdash dashboard'
+        required: true
 
 jobs:
 

From 127830e49f32bb61dcadcc185bb818b1444b6d14 Mon Sep 17 00:00:00 2001
From: Ward Fisher <wfisher@ucar.edu>
Date: Tue, 24 Oct 2023 11:42:49 -0600
Subject: [PATCH 15/19] Shot in the dark

---
 .github/workflows/run_tests_cdash.yml | 12 ++++++++----
 1 file changed, 8 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/run_tests_cdash.yml b/.github/workflows/run_tests_cdash.yml
index 927f10a657..849427af6d 100644
--- a/.github/workflows/run_tests_cdash.yml
+++ b/.github/workflows/run_tests_cdash.yml
@@ -4,12 +4,16 @@
 
 name: Run CDash Ubuntu/Linux netCDF Tests
 
-on: [pull_request, workflow_dispatch]
+on: 
+  workflow_dispatch:
+  pull_request:
   workflow_call:
     secrets:
-      CDASH_TOKEN:
-        description: 'A token required to access the cdash dashboard'
-        required: true
+        CDASH_TOKEN:
+          description: 'A token required to access the cdash dashboard'
+          required: true
+  
+          
 
 jobs:
 

From 3e341bd6e1c93bd913fc7af046c2add4192455a9 Mon Sep 17 00:00:00 2001
From: Ward Fisher <wfisher@ucar.edu>
Date: Tue, 24 Oct 2023 11:46:21 -0600
Subject: [PATCH 16/19] Turning off cdash integration for the moment, but
 merging PR to include other changes/updates.

---
 .github/workflows/run_tests_cdash.yml | 11 ++---------
 1 file changed, 2 insertions(+), 9 deletions(-)

diff --git a/.github/workflows/run_tests_cdash.yml b/.github/workflows/run_tests_cdash.yml
index 849427af6d..57053172cd 100644
--- a/.github/workflows/run_tests_cdash.yml
+++ b/.github/workflows/run_tests_cdash.yml
@@ -4,15 +4,8 @@
 
 name: Run CDash Ubuntu/Linux netCDF Tests
 
-on: 
-  workflow_dispatch:
-  pull_request:
-  workflow_call:
-    secrets:
-        CDASH_TOKEN:
-          description: 'A token required to access the cdash dashboard'
-          required: true
-  
+on: workflow_dispatch
+    
           
 
 jobs:

From bbcbab7a26a787870cd85aa306f4bd8f70c85cb9 Mon Sep 17 00:00:00 2001
From: Ward Fisher <wfisher@ucar.edu>
Date: Tue, 24 Oct 2023 11:48:29 -0600
Subject: [PATCH 17/19] Clarify name of a Github Action.

---
 .github/workflows/run_tests_win_mingw.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/run_tests_win_mingw.yml b/.github/workflows/run_tests_win_mingw.yml
index f48e81e7fa..7bc6cde76a 100644
--- a/.github/workflows/run_tests_win_mingw.yml
+++ b/.github/workflows/run_tests_win_mingw.yml
@@ -4,7 +4,7 @@
 # for information related to github runners.
 ###
 
-name: Run MSYS2, MinGW64-based Tests
+name: Run MSYS2, MinGW64-based Tests (Not Visual Studio)
 
 env:
   CPPFLAGS: "-D_BSD_SOURCE"

From 347b2504bfddc8105c36d41b489977066f649fa6 Mon Sep 17 00:00:00 2001
From: Ward Fisher <wfisher@ucar.edu>
Date: Tue, 24 Oct 2023 13:15:12 -0600
Subject: [PATCH 18/19] Undo previous change.

---
 CMakeLists.txt | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/CMakeLists.txt b/CMakeLists.txt
index 6fa02dcd6a..59bb846328 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -267,7 +267,8 @@ IF(CMAKE_COMPILER_IS_GNUCC OR APPLE)
 
   # Coverage tests need to have optimization turned off.
   IF(ENABLE_COVERAGE_TESTS)
-    SET(CMAKE_CXX_FLAGS "${CMAKE_C_FLAGS} -g -O0 -coverage -fprofile-arcs -ftest-coverage")
+    SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -g -O0 -coverage -fprofile-arcs -ftest-coverage")
+    SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -g -O0 -coverage -fprofile-arcs -ftest-coverage")
     SET(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -fprofile-arcs")
     MESSAGE(STATUS "Coverage Tests: On.")
   ENDIF()

From d4766297041d3727f063b4f25040b20808ea7169 Mon Sep 17 00:00:00 2001
From: Ward Fisher <wfisher@ucar.edu>
Date: Tue, 24 Oct 2023 13:16:11 -0600
Subject: [PATCH 19/19] Replace accidental flag removal

---
 CMakeLists.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/CMakeLists.txt b/CMakeLists.txt
index 59bb846328..29c505aadd 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -269,7 +269,7 @@ IF(CMAKE_COMPILER_IS_GNUCC OR APPLE)
   IF(ENABLE_COVERAGE_TESTS)
     SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -g -O0 -coverage -fprofile-arcs -ftest-coverage")
     SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -g -O0 -coverage -fprofile-arcs -ftest-coverage")
-    SET(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -fprofile-arcs")
+    SET(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -fprofile-arcs -ftest-coverage")
     MESSAGE(STATUS "Coverage Tests: On.")
   ENDIF()