Figuring out ATLAS via flexiblas

Author: gvegayon

docker/Dockerfile.flexiblas

@@ -0,0 +1,20 @@
+# Thanks to https://github.com/Enchufa2/r-flexiblas
+FROM fedora:rawhide
+
+RUN dnf install R flexiblas-* -y
+
+# Clonning tag v3.3.1 from the repo flexiblas
+RUN dnf install R-flexiblas -y
+
+RUN echo 'options(repos=c(CRAN="https://cloud.r-project.org"))' >> ~/.Rprofile
+
+RUN \
+	Rscript -e 'utils::install.packages(c("fmcmc", "MASS", "ape", "coda", "tinytest", "xml2"))'
+
+RUN Rscript -e 'utils::install.packages("lattice")'
+
+RUN Rscript -e 'utils::install.packages(c("knitr", "rmarkdown"))'
+
+RUN Rscript -e 'utils::install.packages("AUC")'
+
+CMD ["bash"]

docker/Makefile

@@ -4,7 +4,10 @@ build:
 
 clang:
 	docker build -t uscbiostats/aphylo:clang -f Dockerfile-clang .
-	
+
+flexiblas:
+	docker build -t uscbiostats/aphylo:flexiblas -f Dockerfile.flexiblas .
+
 push: build
 	docker push uscbiostats/aphylo:release && \
 		docker push uscbiostats/aphylo:devel