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@UC-Davis-molecular-computing

UC-Davis Molecular Computing Group

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  1. scadnano scadnano Public

    Web application for designing DNA structures such as DNA origami.

    Dart 27 15

  2. scadnano-python-package scadnano-python-package Public

    Python scripting library for generating designs readable by scadnano.

    Python 16 8

  3. nuad nuad Public

    Nucleic acid sequence designer

    Jupyter Notebook 11 7

  4. ppsim ppsim Public

    Python package for simulating population protocols

    Python 10 5

  5. simd-dna simd-dna Public

    A Python simulator for the SIMD||DNA model of computation, as defined in the paper https://doi.org/10.1007/978-3-030-26807-7_12

    Python 4 3

  6. gpac gpac Public

    package for numerically integrating differential equations (front-end for scipy.solve_ivp) using simpler syntax than scipy

    Jupyter Notebook 1

Repositories

Showing 10 of 10 repositories
  • ppsim-rust Public
    UC-Davis-molecular-computing/ppsim-rust’s past year of commit activity
    Jupyter Notebook 0 MIT 0 1 0 Updated May 11, 2025
  • ppsim Public

    Python package for simulating population protocols

    UC-Davis-molecular-computing/ppsim’s past year of commit activity
    Python 10 MIT 5 19 0 Updated May 10, 2025
  • gpac Public

    package for numerically integrating differential equations (front-end for scipy.solve_ivp) using simpler syntax than scipy

    UC-Davis-molecular-computing/gpac’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated May 7, 2025
  • scadnano Public

    Web application for designing DNA structures such as DNA origami.

    UC-Davis-molecular-computing/scadnano’s past year of commit activity
    Dart 27 MIT 15 182 (5 issues need help) 9 Updated May 2, 2025
  • ode2tn Public

    Python package to compile an arbitrary polynomial ODE into a transcriptional network simulating it

    UC-Davis-molecular-computing/ode2tn’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated May 1, 2025
  • nuad Public

    Nucleic acid sequence designer

    UC-Davis-molecular-computing/nuad’s past year of commit activity
    Jupyter Notebook 11 MIT 7 39 4 Updated Apr 10, 2025
  • scadnano-python-package Public

    Python scripting library for generating designs readable by scadnano.

    UC-Davis-molecular-computing/scadnano-python-package’s past year of commit activity
    Python 16 MIT 8 38 4 Updated Mar 31, 2025
  • labelator Public

    Python package for creating PDF documents that can be printed onto circular sticky labels that can be stuck to test tubes.

    UC-Davis-molecular-computing/labelator’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 5, 2024
  • simd-dna Public

    A Python simulator for the SIMD||DNA model of computation, as defined in the paper https://doi.org/10.1007/978-3-030-26807-7_12

    UC-Davis-molecular-computing/simd-dna’s past year of commit activity
    Python 4 MIT 3 0 0 Updated Mar 11, 2023
  • simd-dna-web-simulator Public

    A visual simulator for the SIMD||DNA model

    UC-Davis-molecular-computing/simd-dna-web-simulator’s past year of commit activity
    TypeScript 0 0 0 0 Updated May 31, 2022

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