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base repository: TRON-Bioinformatics/tronflow-bam-preprocessing
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base: v2.0.0
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head repository: TRON-Bioinformatics/tronflow-bam-preprocessing
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compare: master
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  • 14 commits
  • 20 files changed
  • 4 contributors

Commits on Oct 18, 2022

  1. adds again removed initial sort

    @priesgo
    priesgo authored Oct 18, 2022
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    4160fcf View commit details

  2. dummy ciommit

    @priesgo
    priesgo authored Oct 18, 2022
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    5faa1bd View commit details

Commits on Oct 19, 2022

  1. checks the reference genome and create indices if necessary

    @priesgo
    priesgo committed Oct 19, 2022
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    5207195 View commit details

  2. fix issue with memory in split reads

    @priesgo
    priesgo committed Oct 19, 2022
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    3ccb2f0 View commit details

  3. rollback change about unneeded sort operation

    @priesgo
    priesgo committed Oct 19, 2022
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    0d9d7d7 View commit details

  4. Revert "rollback change about unneeded sort operation" 

    This reverts commit 0d9d7d7.
    @priesgo
    priesgo committed Oct 19, 2022
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    3771f3a View commit details

  5. forces all jobs to wait on the reference check

    @priesgo
    priesgo committed Oct 19, 2022
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    0c151ff View commit details

  6. Merge pull request #11 from TRON-Bioinformatics/create-indices 

    Create indices
    @priesgo
    priesgo authored Oct 19, 2022
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    266c18b View commit details

Commits on Feb 8, 2023

  1. update usage doc for input file to indicate need for unique name

    @ibn-salem
    ibn-salem committed Feb 8, 2023
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    15d8890 View commit details

Commits on Feb 10, 2023

  1. Merge pull request #15 from TRON-Bioinformatics/update_input_table_toc 

    Update input table doc
    @priesgo
    priesgo authored Feb 10, 2023
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    a9c44b2 View commit details

Commits on Jun 10, 2024

  1. Adapted SplitNCigarReads command to also split multimappers 

    * added ci nextflow profile
    @LKress
    LKress committed Jun 10, 2024
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    e12489d View commit details

Commits on Jun 11, 2024

  1. Add split_cigarn_args parameter

    @LKress
    LKress committed Jun 11, 2024
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    df964bd View commit details

Commits on Jun 13, 2024

  1. Merge pull request #17 from TRON-Bioinformatics/split-multimapper 

    Adapt SplitNCigarReads command to also split multimappers
    @priesgo
    priesgo authored Jun 13, 2024
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    bff8119 View commit details

Commits on Jul 4, 2024

  1. Add conda.enabled to nextflow.config

    @LKress
    LKress committed Jul 4, 2024
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    c9c4962 View commit details
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