Remove unused midoss dependencies from env files

The geopandas, shapely, rasterio, and PyTables packages were removed from
multiple environment files and configurations as they are no longer required
dependencies for the moad_tools package. This cleanup reduces dependency bloat
and simplifies maintenance.

Author: douglatornell

docs/conf.py

@@ -104,7 +104,6 @@
     "scipy",
     "scipy.interpolate",
     "scipy.io",
-    "shapely",
     "watchdog",
     "xarray",
 ]

envs/environment-dev.yaml

@@ -38,7 +38,6 @@ dependencies:
   - f90nml
   - feedgen
   - flox
-  - geopandas
   - gitpython
   - gsw
   - h5netcdf
@@ -58,19 +57,16 @@ dependencies:
   - pygrib
   - pypdf
   - pyproj
-  - pytables
   - python=3.12
   - pyyaml
   - pyzmq
-  - rasterio
   - requests
   - retrying
   - rich
   - schedule
   - scipy
   - scour
   - sentry-sdk
-  - shapely
   - structlog
   - supervisor
   - tenacity

envs/environment-fig-dev.yaml

@@ -31,7 +31,6 @@ dependencies:
   - coloredlogs
   - dask
   - docutils
-  - geopandas
   - gitpython
   - gsw
   - h5netcdf
@@ -51,14 +50,11 @@ dependencies:
   - pygrib
   - pypdf
   - pyproj
-  - pytables
   - python=3.12
   - pyyaml
-  - rasterio
   - requests
   - scipy
   - sentry-sdk
-  - shapely
   - verboselogs
   - watchdog
   - xarray

envs/environment-linkcheck.yaml

@@ -26,7 +26,6 @@ dependencies:
   - f90nml
   - feedgen
   - flox
-  - geopandas
   - gitpython
   - gsw
   - httpx
@@ -46,18 +45,15 @@ dependencies:
   - pygrib
   - pypdf
   - pyproj
-  - pytables
   - pyyaml
   - pyzmq
-  - rasterio
   - requests
   - retrying
   - rich
   - schedule
   - scipy
   - scour
   - sentry-sdk
-  - shapely
   - structlog
   - supervisor
   - tenacity

envs/environment-prod.yaml

@@ -38,7 +38,6 @@ dependencies:
   - f90nml
   - feedgen
   - flox
-  - geopandas
   - gitpython
   - gsw
   - h5netcdf
@@ -58,19 +57,16 @@ dependencies:
   - pygrib
   - pypdf
   - pyproj
-  - pytables
   - python=3.12
   - pyyaml
   - pyzmq
-  - rasterio
   - requests
   - retrying
   - rich
   - schedule
   - scipy
   - scour
   - sentry-sdk
-  - shapely
   - structlog
   - supervisor
   - tenacity

envs/environment-test.yaml

@@ -26,7 +26,6 @@ dependencies:
   - f90nml
   - feedgen
   - flox
-  - geopandas
   - gitpython
   - gsw
   - httpx
@@ -45,18 +44,15 @@ dependencies:
   - pygrib
   - pypdf
   - pyproj
-  - pytables
   - pyyaml
   - pyzmq
-  - rasterio
   - requests
   - retrying
   - rich
   - schedule
   - scipy
   - scour
   - sentry-sdk
-  - shapely
   - structlog
   - supervisor
   - tenacity

pyproject.toml

@@ -57,7 +57,6 @@ dependencies = [
     "f90nml",
     "feedgen",
     "flox",
-    "geopandas",
     "gitpython",
     "gsw",
     "h5netcdf",
@@ -76,16 +75,13 @@ dependencies = [
     "pygrib",
     "pypdf",
     "pyproj",
-    "tables",  # pkg name is pytables but pip sees it as tables
     "python-hglib",
     "pyyaml",
-    "rasterio",
     "retrying",
     "rich",
     "scipy",
     "scour",
     "sentry-sdk",
-    "shapely",
     "structlog",
     "supervisor",
     "sysrsync",